@jbrowse/plugin-data-management 2.12.0 → 2.12.1

package/dist/AddConnectionWidget/index.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = AddConnectionWidgetF;
 const configuration_1 = require("@jbrowse/core/configuration");
 const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
 const react_1 = require("react");
@@ -42,4 +43,3 @@ function AddConnectionWidgetF(pluginManager) {
         });
     });
 }
-exports.default = AddConnectionWidgetF;

package/dist/AddTrackWidget/index.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = AddTrackWidgetF;
 const configuration_1 = require("@jbrowse/core/configuration");
 const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
 const react_1 = require("react");
@@ -42,4 +43,3 @@ function AddTrackWidgetF(pluginManager) {
         });
     });
 }
-exports.default = AddTrackWidgetF;

package/dist/AddTrackWidget/model.js

@@ -1,5 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = f;
 const mobx_state_tree_1 = require("mobx-state-tree");
 const mst_1 = require("@jbrowse/core/util/types/mst");
 const tracks_1 = require("@jbrowse/core/util/tracks");
@@ -234,4 +235,3 @@ function f(pluginManager) {
         },
     }));
 }
-exports.default = f;

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = FacetedHeader;
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
@@ -81,4 +82,3 @@ function FacetedHeader({ model, }) {
                 },
             ] })));
 }
-exports.default = FacetedHeader;

package/dist/HierarchicalTrackSelectorWidget/components/faceted/util.js

@@ -1,10 +1,9 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getRowStr = void 0;
+exports.getRowStr = getRowStr;
 function getRowStr(facet, row) {
     var _a;
     return `${(facet.startsWith('metadata.')
         ? (_a = row.metadata) === null || _a === void 0 ? void 0 : _a[facet.replace('metadata.', '')]
         : row[facet]) || ''}`;
 }
-exports.getRowStr = getRowStr;

package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js

@@ -69,13 +69,18 @@ const HierarchicalTree = (0, mobx_react_1.observer)(function HierarchicalTree({
         model,
         drawerPosition,
     }), [view, model, drawerPosition, tree]);
-    const treeWalker = (0, react_1.useCallback)(function* treeWalker() {
+    // doing this properly without ts-expect-error is tricky, react-vtree has
+    // some typescript examples that could help
+    const treeWalker = (0, react_1.useCallback)(
+    // @ts-expect-error
+    function* treeWalker() {
         for (const child of tree.children) {
             yield getNodeData(child, 0, extra, obj);
         }
         while (true) {
             // @ts-expect-error
             const parentMeta = yield;
+            // @ts-expect-error
             for (const curr of parentMeta.node.children) {
                 yield getNodeData(curr, parentMeta.nestingLevel + 1, extra, obj);
             }

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = Category;
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
@@ -108,4 +109,3 @@ function Category({ isOpen, setOpen, data, }) {
                 setMenuEl(null);
             }, open: Boolean(menuEl), onClose: () => setMenuEl(null) })) : null));
 }
-exports.default = Category;

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = TrackLabel;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
@@ -38,4 +39,3 @@ function TrackLabel({ data }) {
                     react_1.default.createElement(SanitizedHTML_1.default, { html: name })) })),
         react_1.default.createElement(TrackLabelMenu_1.default, { model: model, trackId: trackId, id: id, conf: conf })));
 }
-exports.default = TrackLabel;

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = Node;
 const react_1 = __importDefault(require("react"));
 const mui_1 = require("tss-react/mui");
 // locals
@@ -50,4 +51,3 @@ function Node({ data, isOpen, style, setOpen, }) {
             } },
             react_1.default.createElement("div", { className: !isLeaf ? classes.accordionColor : undefined }, !isLeaf ? (react_1.default.createElement(TrackCategory_1.default, { isOpen: isOpen, data: data, setOpen: setOpen })) : (react_1.default.createElement(TrackLabel_1.default, { data: data }))))));
 }
-exports.default = Node;

package/dist/HierarchicalTrackSelectorWidget/components/util.js

@@ -1,6 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isUnsupported = exports.treeToMap = exports.getAllChildren = void 0;
+exports.getAllChildren = getAllChildren;
+exports.treeToMap = treeToMap;
+exports.isUnsupported = isUnsupported;
 function getAllChildren(subtree) {
     // @ts-expect-error
     return (subtree === null || subtree === void 0 ? void 0 : subtree.type) === 'category'
@@ -9,7 +11,6 @@ function getAllChildren(subtree) {
             .flat(Infinity)
         : [];
 }
-exports.getAllChildren = getAllChildren;
 function treeToMap(tree, map = new Map()) {
     if (tree.id && tree.children.length) {
         map.set(tree.id, tree);
@@ -19,8 +20,6 @@ function treeToMap(tree, map = new Map()) {
     }
     return map;
 }
-exports.treeToMap = treeToMap;
 function isUnsupported(name = '') {
     return name.endsWith('(Unsupported)') || name.endsWith('(Unknown)');
 }
-exports.isUnsupported = isUnsupported;

package/dist/HierarchicalTrackSelectorWidget/facetedModel.d.ts

@@ -63,7 +63,13 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
     readonly allTrackConfigurations: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
 } & {
     /**
@@ -74,7 +80,13 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
         readonly conf: {
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
         readonly name: string;
         readonly category: string;
@@ -104,7 +116,13 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
         readonly conf: {
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
         readonly name: string;
         readonly category: string;

package/dist/HierarchicalTrackSelectorWidget/facetedModel.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.facetedStateTreeF = void 0;
+exports.facetedStateTreeF = facetedStateTreeF;
 const mobx_state_tree_1 = require("mobx-state-tree");
 const util_1 = require("./util");
 const configuration_1 = require("@jbrowse/core/configuration");
@@ -173,4 +173,3 @@ function facetedStateTreeF() {
         },
     }));
 }
-exports.facetedStateTreeF = facetedStateTreeF;

package/dist/HierarchicalTrackSelectorWidget/facetedUtil.js

@@ -1,13 +1,12 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getRootKeys = exports.findNonSparseKeys = void 0;
+exports.findNonSparseKeys = findNonSparseKeys;
+exports.getRootKeys = getRootKeys;
 function findNonSparseKeys(keys, rows, cb) {
     return keys.filter(f => rows.map(r => cb(r, f)).filter(f => !!f).length > 5);
 }
-exports.findNonSparseKeys = findNonSparseKeys;
 function getRootKeys(obj) {
     return Object.entries(obj)
         .map(([key, val]) => (typeof val === 'string' ? key : ''))
         .filter(f => !!f);
 }
-exports.getRootKeys = getRootKeys;

package/dist/HierarchicalTrackSelectorWidget/filterTracks.d.ts

@@ -8,5 +8,11 @@ export declare function filterTracks(tracks: AnyConfigurationModel[], self: {
 }): ({
     [x: string]: any;
 } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-    setSubschema(slotName: string, data: unknown): any;
+    setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
 } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];

package/dist/HierarchicalTrackSelectorWidget/filterTracks.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.filterTracks = void 0;
+exports.filterTracks = filterTracks;
 const configuration_1 = require("@jbrowse/core/configuration");
 const util_1 = require("@jbrowse/core/util");
 const util_2 = require("./util");
@@ -29,4 +29,3 @@ function filterTracks(tracks, self) {
         return (0, util_2.hasAnyOverlap)(compatDisplays, trackDisplays);
     });
 }
-exports.filterTracks = filterTracks;

package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.generateHierarchy = void 0;
+exports.generateHierarchy = generateHierarchy;
 const configuration_1 = require("@jbrowse/core/configuration");
 const util_1 = require("@jbrowse/core/util");
 const tracks_1 = require("@jbrowse/core/util/tracks");
@@ -101,4 +101,3 @@ function generateHierarchy({ model, trackConfs, extra, noCategories, menuItems,
     }
     return hierarchy.children;
 }
-exports.generateHierarchy = generateHierarchy;

package/dist/HierarchicalTrackSelectorWidget/index.js

@@ -27,6 +27,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.configSchema = exports.stateModelFactory = void 0;
+exports.default = HierarchicalTrackSelectorWidgetF;
 const model_1 = __importDefault(require("./model"));
 const configSchema_1 = __importDefault(require("./configSchema"));
 const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
@@ -42,7 +43,6 @@ function HierarchicalTrackSelectorWidgetF(pluginManager) {
         });
     });
 }
-exports.default = HierarchicalTrackSelectorWidgetF;
 var model_2 = require("./model");
 Object.defineProperty(exports, "stateModelFactory", { enumerable: true, get: function () { return __importDefault(model_2).default; } });
 var configSchema_2 = require("./configSchema");

package/dist/HierarchicalTrackSelectorWidget/model.d.ts

@@ -37,15 +37,19 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
         setUseShoppingCart(f: boolean): void;
         setFilterText(str: string): void;
         setShowSparse(f: boolean): void;
-        setShowOptions(f: boolean): void; /**
-         * #property
-         */
+        setShowOptions(f: boolean): void;
         setShowFilters(f: boolean): void;
     } & {
         readonly allTrackConfigurations: ({
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
     } & {
         readonly rows: {
@@ -53,7 +57,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
             readonly conf: {
                 [x: string]: any;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                setSubschema(slotName: string, data: unknown): any;
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                        [x: string]: any;
+                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+                } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
             } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
             readonly name: string;
             readonly category: string;
@@ -71,7 +81,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
             readonly conf: {
                 [x: string]: any;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                setSubschema(slotName: string, data: unknown): any;
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                        [x: string]: any;
+                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+                } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
             } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
             readonly name: string;
             readonly category: string;
@@ -86,11 +102,7 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
 }, {
     favorites: string[];
     recentlyUsed: string[];
-    selection: ({
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+    selection: AnyConfigurationModel[];
     sortTrackNames: boolean;
     sortCategories: boolean;
     collapsed: import("mobx").ObservableMap<string, boolean>;
@@ -108,7 +120,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly selectionSet: Set<{
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>>;
     /**
      * #getter
@@ -244,7 +262,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly configAndSessionTrackConfigurations: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
     /**
      * #getter
@@ -252,7 +276,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly allTrackConfigurations: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
     /**
      * #getter
@@ -260,7 +290,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly allTrackConfigurationTrackIdSet: Map<any, {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>>;
 } & {
     /**
@@ -270,7 +306,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly favoriteTracks: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
     /**
      * #getter
@@ -279,7 +321,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly recentlyUsedTracks: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
 } & {
     /**
@@ -290,7 +338,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
         tracks: ({
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
         noCategories: boolean;
         menuItems: never[];

package/dist/HierarchicalTrackSelectorWidget/model.js

@@ -1,5 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = stateTreeFactory;
 const mobx_state_tree_1 = require("mobx-state-tree");
 const mobx_1 = require("mobx");
 const configuration_1 = require("@jbrowse/core/configuration");
@@ -500,4 +501,3 @@ function stateTreeFactory(pluginManager) {
         },
     }));
 }
-exports.default = stateTreeFactory;

package/dist/HierarchicalTrackSelectorWidget/util.js

@@ -1,6 +1,10 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.findTopLevelCategories = exports.findSubCategories = exports.matches = exports.hasAllOverlap = exports.hasAnyOverlap = void 0;
+exports.hasAnyOverlap = hasAnyOverlap;
+exports.hasAllOverlap = hasAllOverlap;
+exports.matches = matches;
+exports.findSubCategories = findSubCategories;
+exports.findTopLevelCategories = findTopLevelCategories;
 const configuration_1 = require("@jbrowse/core/configuration");
 const tracks_1 = require("@jbrowse/core/util/tracks");
 function hasAnyOverlap(a1 = [], a2 = []) {
@@ -14,19 +18,16 @@ function hasAnyOverlap(a1 = [], a2 = []) {
         return a2.some(a => s1.has(a));
     }
 }
-exports.hasAnyOverlap = hasAnyOverlap;
 function hasAllOverlap(a1 = [], a2 = []) {
     const s1 = new Set(a1);
     return a2.every(a => s1.has(a));
 }
-exports.hasAllOverlap = hasAllOverlap;
 function matches(query, conf, session) {
     const categories = ((0, configuration_1.readConfObject)(conf, 'category') || []);
     const queryLower = query.toLowerCase();
     return ((0, tracks_1.getTrackName)(conf, session).toLowerCase().includes(queryLower) ||
         !!categories.filter(c => c.toLowerCase().includes(queryLower)).length);
 }
-exports.matches = matches;
 function findSubCategories(obj, paths, depth = 0) {
     let hasSubs = false;
     for (const elt of obj) {
@@ -43,7 +44,6 @@ function findSubCategories(obj, paths, depth = 0) {
     }
     return hasSubs;
 }
-exports.findSubCategories = findSubCategories;
 function findTopLevelCategories(obj, paths) {
     for (const elt of obj) {
         if (elt.children.length) {
@@ -51,4 +51,3 @@ function findTopLevelCategories(obj, paths) {
         }
     }
 }
-exports.findTopLevelCategories = findTopLevelCategories;

package/dist/PluginStoreWidget/components/DeletePluginDialog.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = DeletePluginDialog;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
@@ -25,4 +26,3 @@ function DeletePluginDialog({ onClose, plugin, }) {
                     onClose();
                 } }, "Cancel"))));
 }
-exports.default = DeletePluginDialog;

package/dist/PluginStoreWidget/components/util.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.useFetchPlugins = void 0;
+exports.useFetchPlugins = useFetchPlugins;
 const react_1 = require("react");
 function useFetchPlugins() {
     const [plugins, setPlugins] = (0, react_1.useState)();
@@ -26,4 +26,3 @@ function useFetchPlugins() {
     }, []);
     return { plugins, error };
 }
-exports.useFetchPlugins = useFetchPlugins;

package/dist/PluginStoreWidget/index.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = PluginStoreWidgetF;
 const configuration_1 = require("@jbrowse/core/configuration");
 const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
 const react_1 = require("react");
@@ -42,4 +43,3 @@ function PluginStoreWidgetF(pluginManager) {
         });
     });
 }
-exports.default = PluginStoreWidgetF;

package/dist/PluginStoreWidget/model.js

@@ -1,5 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = stateModelFactory;
 const mobx_state_tree_1 = require("mobx-state-tree");
 const mst_1 = require("@jbrowse/core/util/types/mst");
 function stateModelFactory(pluginManager) {
@@ -19,4 +20,3 @@ function stateModelFactory(pluginManager) {
         },
     }));
 }
-exports.default = stateModelFactory;

package/dist/index.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
 declare const AssemblyManager: import("react").LazyExoticComponent<({ rootModel, onClose, }: {

package/dist/ucsc-trackhub/doConnect.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.doConnect = void 0;
+exports.doConnect = doConnect;
 const ucsc_hub_1 = require("@gmod/ucsc-hub");
 const ucscTrackHub_1 = require("./ucscTrackHub");
 const configuration_1 = require("@jbrowse/core/configuration");
@@ -128,4 +128,3 @@ async function doConnect(self) {
         (_a = session.breakConnection) === null || _a === void 0 ? void 0 : _a.call(session, self.configuration);
     }
 }
-exports.doConnect = doConnect;

package/dist/ucsc-trackhub/index.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = UCSCTrackHubConnectionF;
 const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
 const model_1 = __importDefault(require("./model"));
 const configSchema_1 = __importDefault(require("./configSchema"));
@@ -16,4 +17,3 @@ function UCSCTrackHubConnectionF(pluginManager) {
         url: '//genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html#Intro',
     }));
 }
-exports.default = UCSCTrackHubConnectionF;

package/dist/ucsc-trackhub/model.d.ts

@@ -14,9 +14,7 @@ export default function UCSCTrackHubConnection(pluginManager: PluginManager): im
         };
         assemblyNames: {
             type: string;
-            defaultValue: never[]; /**
-             * #action
-             */
+            defaultValue: never[];
             description: string;
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
@@ -34,9 +32,7 @@ export default function UCSCTrackHubConnection(pluginManager: PluginManager): im
             description: string;
         };
         assemblyNames: {
-            type: string; /**
-             * #property
-             */
+            type: string;
             defaultValue: never[];
             description: string;
         };
@@ -57,28 +53,12 @@ export default function UCSCTrackHubConnection(pluginManager: PluginManager): im
      */
     type: import("mobx-state-tree").ISimpleType<"UCSCTrackHubConnection">;
 }, {
-    connect(_arg: {
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+    connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
 } & {
     afterAttach(): void;
-    addTrackConf(trackConf: {
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
-    addTrackConfs(trackConfs: ({
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): any[];
-    setTrackConfs(trackConfs: ({
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
+    addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
+    addTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): any[];
+    setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
     clear(): void;
 } & {
     /**

package/dist/ucsc-trackhub/model.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = UCSCTrackHubConnection;
 const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
 const configuration_1 = require("@jbrowse/core/configuration");
 const mobx_state_tree_1 = require("mobx-state-tree");
@@ -58,4 +59,3 @@ function UCSCTrackHubConnection(pluginManager) {
         },
     }));
 }
-exports.default = UCSCTrackHubConnection;

package/dist/ucsc-trackhub/ucscTrackHub.js

@@ -3,7 +3,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.ucscAssemblies = exports.generateTracks = exports.makeLoc2 = exports.makeLocAlt = exports.makeLoc = exports.fetchTrackDbFile = exports.fetchGenomesFile = void 0;
+exports.ucscAssemblies = void 0;
+exports.fetchGenomesFile = fetchGenomesFile;
+exports.fetchTrackDbFile = fetchTrackDbFile;
+exports.makeLoc = makeLoc;
+exports.makeLocAlt = makeLocAlt;
+exports.makeLoc2 = makeLoc2;
+exports.generateTracks = generateTracks;
 /* eslint-disable @typescript-eslint/no-explicit-any */
 const util_1 = require("@jbrowse/core/util");
 const io_1 = require("@jbrowse/core/util/io");
@@ -13,23 +19,19 @@ async function fetchGenomesFile(genomesLoc) {
     const genomesFileText = await (0, io_1.openLocation)(genomesLoc).readFile('utf8');
     return new ucsc_hub_1.GenomesFile(genomesFileText);
 }
-exports.fetchGenomesFile = fetchGenomesFile;
 async function fetchTrackDbFile(trackDbLoc) {
     const text = await (0, io_1.openLocation)(trackDbLoc).readFile('utf8');
     return new ucsc_hub_1.TrackDbFile(text);
 }
-exports.fetchTrackDbFile = fetchTrackDbFile;
 function makeLoc(first, base) {
     return {
         uri: new URL(first, new URL(base.uri, base.baseUri)).href,
         locationType: 'UriLocation',
     };
 }
-exports.makeLoc = makeLoc;
 function makeLocAlt(first, alt, base) {
     return first ? makeLoc(first, base) : makeLoc(alt, base);
 }
-exports.makeLocAlt = makeLocAlt;
 function makeLoc2(first, alt) {
     return first
         ? {
@@ -41,7 +43,6 @@ function makeLoc2(first, alt) {
             locationType: 'UriLocation',
         };
 }
-exports.makeLoc2 = makeLoc2;
 function generateTracks({ trackDb, trackDbLoc, assemblyName, sequenceAdapter, }) {
     return Object.entries(trackDb.data)
         .map(([trackName, track]) => {
@@ -85,7 +86,6 @@ function generateTracks({ trackDb, trackDbLoc, assemblyName, sequenceAdapter, })
     })
         .filter(util_1.notEmpty);
 }
-exports.generateTracks = generateTracks;
 function makeTrackConfig({ track, categories, trackDbLoc, trackDb, sequenceAdapter, }) {
     var _a;
     const trackType = track.data.type || ((_a = trackDb.data[track.data.parent || '']) === null || _a === void 0 ? void 0 : _a.data.type) || '';

package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js

@@ -41,13 +41,18 @@ const HierarchicalTree = observer(function HierarchicalTree({ height, tree, mode
         model,
         drawerPosition,
     }), [view, model, drawerPosition, tree]);
-    const treeWalker = useCallback(function* treeWalker() {
+    // doing this properly without ts-expect-error is tricky, react-vtree has
+    // some typescript examples that could help
+    const treeWalker = useCallback(
+    // @ts-expect-error
+    function* treeWalker() {
         for (const child of tree.children) {
             yield getNodeData(child, 0, extra, obj);
         }
         while (true) {
             // @ts-expect-error
             const parentMeta = yield;
+            // @ts-expect-error
             for (const curr of parentMeta.node.children) {
                 yield getNodeData(curr, parentMeta.nestingLevel + 1, extra, obj);
             }

package/esm/HierarchicalTrackSelectorWidget/facetedModel.d.ts

@@ -63,7 +63,13 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
     readonly allTrackConfigurations: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
 } & {
     /**
@@ -74,7 +80,13 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
         readonly conf: {
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
         readonly name: string;
         readonly category: string;
@@ -104,7 +116,13 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
         readonly conf: {
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
         readonly name: string;
         readonly category: string;

package/esm/HierarchicalTrackSelectorWidget/filterTracks.d.ts

@@ -8,5 +8,11 @@ export declare function filterTracks(tracks: AnyConfigurationModel[], self: {
 }): ({
     [x: string]: any;
 } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-    setSubschema(slotName: string, data: unknown): any;
+    setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
 } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];

package/esm/HierarchicalTrackSelectorWidget/model.d.ts

@@ -37,15 +37,19 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
         setUseShoppingCart(f: boolean): void;
         setFilterText(str: string): void;
         setShowSparse(f: boolean): void;
-        setShowOptions(f: boolean): void; /**
-         * #property
-         */
+        setShowOptions(f: boolean): void;
         setShowFilters(f: boolean): void;
     } & {
         readonly allTrackConfigurations: ({
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
     } & {
         readonly rows: {
@@ -53,7 +57,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
             readonly conf: {
                 [x: string]: any;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                setSubschema(slotName: string, data: unknown): any;
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                        [x: string]: any;
+                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+                } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
             } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
             readonly name: string;
             readonly category: string;
@@ -71,7 +81,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
             readonly conf: {
                 [x: string]: any;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                setSubschema(slotName: string, data: unknown): any;
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                        [x: string]: any;
+                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+                } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
             } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
             readonly name: string;
             readonly category: string;
@@ -86,11 +102,7 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
 }, {
     favorites: string[];
     recentlyUsed: string[];
-    selection: ({
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+    selection: AnyConfigurationModel[];
     sortTrackNames: boolean;
     sortCategories: boolean;
     collapsed: import("mobx").ObservableMap<string, boolean>;
@@ -108,7 +120,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly selectionSet: Set<{
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>>;
     /**
      * #getter
@@ -244,7 +262,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly configAndSessionTrackConfigurations: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
     /**
      * #getter
@@ -252,7 +276,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly allTrackConfigurations: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
     /**
      * #getter
@@ -260,7 +290,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly allTrackConfigurationTrackIdSet: Map<any, {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>>;
 } & {
     /**
@@ -270,7 +306,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly favoriteTracks: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
     /**
      * #getter
@@ -279,7 +321,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     readonly recentlyUsedTracks: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
 } & {
     /**
@@ -290,7 +338,13 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
         tracks: ({
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
         noCategories: boolean;
         menuItems: never[];

package/esm/index.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
 declare const AssemblyManager: import("react").LazyExoticComponent<({ rootModel, onClose, }: {

package/esm/ucsc-trackhub/model.d.ts

@@ -14,9 +14,7 @@ export default function UCSCTrackHubConnection(pluginManager: PluginManager): im
         };
         assemblyNames: {
             type: string;
-            defaultValue: never[]; /**
-             * #action
-             */
+            defaultValue: never[];
             description: string;
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
@@ -34,9 +32,7 @@ export default function UCSCTrackHubConnection(pluginManager: PluginManager): im
             description: string;
         };
         assemblyNames: {
-            type: string; /**
-             * #property
-             */
+            type: string;
             defaultValue: never[];
             description: string;
         };
@@ -57,28 +53,12 @@ export default function UCSCTrackHubConnection(pluginManager: PluginManager): im
      */
     type: import("mobx-state-tree").ISimpleType<"UCSCTrackHubConnection">;
 }, {
-    connect(_arg: {
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+    connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
 } & {
     afterAttach(): void;
-    addTrackConf(trackConf: {
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
-    addTrackConfs(trackConfs: ({
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): any[];
-    setTrackConfs(trackConfs: ({
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
+    addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
+    addTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): any[];
+    setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
     clear(): void;
 } & {
     /**

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-data-management",
-  "version": "2.12.0",
+  "version": "2.12.1",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -60,5 +60,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "935f2602d29abc737bb1f493a922b6218d023ae2"
+  "gitHead": "20f16ae5a56ae5e4806aaa373131e540b0b5b0fd"
 }