@jbrowse/plugin-data-management 2.1.5 → 2.1.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js +2 -3
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js.map +1 -1
- package/dist/AddTrackWidget/components/AddTrackWidget.js +1 -2
- package/dist/AddTrackWidget/components/AddTrackWidget.js.map +1 -1
- package/dist/AddTrackWidget/components/ConfirmTrack.js +6 -7
- package/dist/AddTrackWidget/components/ConfirmTrack.js.map +1 -1
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +3 -4
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/Header.js +11 -13
- package/dist/HierarchicalTrackSelectorWidget/components/Header.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/model.js +7 -13
- package/dist/HierarchicalTrackSelectorWidget/model.js.map +1 -1
- package/dist/PluginStoreWidget/components/PluginCard.js +1 -1
- package/dist/PluginStoreWidget/components/PluginCard.js.map +1 -1
- package/esm/AddConnectionWidget/components/AddConnectionWidget.js +1 -2
- package/esm/AddConnectionWidget/components/AddConnectionWidget.js.map +1 -1
- package/esm/AddTrackWidget/components/AddTrackWidget.js +1 -2
- package/esm/AddTrackWidget/components/AddTrackWidget.js.map +1 -1
- package/esm/AddTrackWidget/components/ConfirmTrack.js +4 -5
- package/esm/AddTrackWidget/components/ConfirmTrack.js.map +1 -1
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +3 -4
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/Header.js +5 -7
- package/esm/HierarchicalTrackSelectorWidget/components/Header.js.map +1 -1
- package/esm/HierarchicalTrackSelectorWidget/model.js +8 -14
- package/esm/HierarchicalTrackSelectorWidget/model.js.map +1 -1
- package/esm/PluginStoreWidget/components/PluginCard.js +2 -2
- package/esm/PluginStoreWidget/components/PluginCard.js.map +1 -1
- package/package.json +2 -2
- package/src/AddConnectionWidget/components/AddConnectionWidget.tsx +6 -5
- package/src/AddTrackWidget/components/AddTrackWidget.tsx +1 -2
- package/src/AddTrackWidget/components/ConfirmTrack.tsx +11 -13
- package/src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx +4 -4
- package/src/HierarchicalTrackSelectorWidget/components/Header.tsx +9 -10
- package/src/HierarchicalTrackSelectorWidget/model.ts +12 -25
- package/src/PluginStoreWidget/components/PluginCard.tsx +3 -4
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@@ -31,7 +31,6 @@ const util_1 = require("@jbrowse/core/util");
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const material_1 = require("@mui/material");
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const mui_1 = require("tss-react/mui");
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const mobx_react_1 = require("mobx-react");
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const mobx_state_tree_1 = require("mobx-state-tree");
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// locals
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const ConfigureConnection_1 = __importDefault(require("./ConfigureConnection"));
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const ConnectionTypeSelect_1 = __importDefault(require("./ConnectionTypeSelect"));
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@@ -57,7 +56,7 @@ function AddConnectionWidget({ model }) {
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const [activeStep, setActiveStep] = (0, react_1.useState)(0);
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const { classes } = useStyles();
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const session = (0, util_1.getSession)(model);
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const { pluginManager } = (0,
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const { pluginManager } = (0, util_1.getEnv)(session);
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function stepContent() {
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switch (activeStep) {
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case 0:
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@@ -66,7 +65,7 @@ function AddConnectionWidget({ model }) {
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if (c) {
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setConfigModel(c.configSchema.create({
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connectionId: `${c.name}-${Date.now()}`,
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}, (0,
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}, (0, util_1.getEnv)(model)));
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}
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} }));
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case 1:
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"AddConnectionWidget.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/AddConnectionWidget.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,
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1
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{"version":3,"file":"AddConnectionWidget.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/AddConnectionWidget.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,6CAAuD;AACvD,4CAOsB;AACtB,uCAA0C;AAC1C,2CAAqC;AAGrC,SAAS;AACT,gFAAuD;AACvD,kFAAyD;AAGzD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;IACD,OAAO,EAAE;QACP,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;KAClD;IACD,MAAM,EAAE;QACN,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC3B,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC9B;IACD,gBAAgB,EAAE;QAChB,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,KAAK,GAAG,CAAC,0BAA0B,EAAE,sBAAsB,CAAC,CAAA;AAElE,SAAS,mBAAmB,CAAC,EAAE,KAAK,EAAsB;IACxD,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,IAAA,gBAAQ,GAAkB,CAAA;IACtE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,GAAyB,CAAA;IACvE,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,IAAA,gBAAQ,EAAC,CAAC,CAAC,CAAA;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAEjC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,OAAO,CAAC,CAAA;IAEzC,SAAS,WAAW;QAClB,QAAQ,UAAU,EAAE;YAClB,KAAK,CAAC;gBACJ,OAAO,CACL,8BAAC,8BAAoB,IACnB,qBAAqB,EACnB,aAAa,CAAC,sBAAsB,CAClC,YAAY,CACO,EAEvB,cAAc,EAAE,cAAc,EAC9B,iBAAiB,EAAE,CAAC,CAAC,EAAE;wBACrB,iBAAiB,CAAC,CAAC,CAAC,CAAA;wBACpB,IAAI,CAAC,EAAE;4BACL,cAAc,CACZ,CAAC,CAAC,YAAY,CAAC,MAAM,CACnB;gCACE,YAAY,EAAE,GAAG,CAAC,CAAC,IAAI,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE;6BACxC,EACD,IAAA,aAAM,EAAC,KAAK,CAAC,CACd,CACF,CAAA;yBACF;oBACH,CAAC,GACD,CACH,CAAA;YACH,KAAK,CAAC;gBACJ,OAAO,cAAc,IAAI,WAAW,CAAC,CAAC,CAAC,CACrC,8BAAC,6BAAmB,IAClB,cAAc,EAAE,cAAc,EAC9B,KAAK,EAAE,WAAW,EAClB,OAAO,EAAE,OAAO,GAChB,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;YAEV;gBACE,OAAO,8BAAC,qBAAU,uBAA0B,CAAA;SAC/C;IACH,CAAC;IAED,SAAS,UAAU;QACjB,IAAI,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE;YACnC,YAAY,EAAE,CAAA;SACf;aAAM;YACL,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;SAC9B;IACH,CAAC;IAED,SAAS,UAAU;QACjB,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;IAC/B,CAAC;IAED,SAAS,YAAY;QACnB,MAAM,cAAc,GAAG,OAAO,CAAC,iBAAiB,CAAC,WAAW,CAAC,CAAA;QAC7D,IAAI,OAAO,CAAC,cAAc,EAAE;YAC1B,OAAO,CAAC,cAAc,CAAC,cAAc,CAAC,CAAA;SACvC;QACD,OAAO,CAAC,UAAU,CAAC,KAAK,CAAC,CAAA;IAC3B,CAAC;IAED,SAAS,gBAAgB;QACvB,OAAO,CACL,CAAC,UAAU,KAAK,CAAC,IAAI,cAAc,CAAC,IAAI,CAAC,UAAU,KAAK,CAAC,IAAI,WAAW,CAAC,CAC1E,CAAA;IACH,CAAC;IAED,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,UAAU,EAAE,UAAU,EACtB,WAAW,EAAC,UAAU,IAErB,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAClB,8BAAC,eAAI,IAAC,GAAG,EAAE,KAAK;YACd,8BAAC,oBAAS,QAAE,KAAK,CAAa;YAC9B,8BAAC,sBAAW;gBACT,WAAW,EAAE;gBACd,uCAAK,SAAS,EAAE,OAAO,CAAC,gBAAgB;oBACtC,8BAAC,iBAAM,IACL,QAAQ,EAAE,UAAU,KAAK,CAAC,EAC1B,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,WAGlB;oBACT,8BAAC,iBAAM,IACL,QAAQ,EAAE,CAAC,gBAAgB,EAAE,EAC7B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,iBACb,mBAAmB,IAE9B,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,CAC9C,CACL,CACM,CACT,CACR,CAAC,CACM,CACN,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,mBAAmB,CAAC,CAAA"}
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@@ -7,11 +7,10 @@ const react_1 = __importDefault(require("react"));
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const mobx_react_1 = require("mobx-react");
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const material_1 = require("@mui/material");
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const util_1 = require("@jbrowse/core/util");
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const mobx_state_tree_1 = require("mobx-state-tree");
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const DefaultAddTrackWorkflow_1 = __importDefault(require("./DefaultAddTrackWorkflow"));
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function AddTrackSelector({ model }) {
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const [val, setVal] = (0, util_1.useLocalStorage)('trackSelector-choice', 'Default');
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const { pluginManager } = (0,
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const { pluginManager } = (0, util_1.getEnv)(model);
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const widgets = pluginManager.getElementTypesInGroup('add track workflow');
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const ComponentMap = {
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Default: DefaultAddTrackWorkflow_1.default,
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@@ -1 +1 @@
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{"version":3,"file":"AddTrackWidget.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/AddTrackWidget.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAA6E;AAE7E,
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{"version":3,"file":"AddTrackWidget.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/AddTrackWidget.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAA6E;AAE7E,6CAA4D;AAI5D,wFAA+D;AAE/D,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAA4B;IAC3D,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,sBAAe,EAAC,sBAAsB,EAAE,SAAS,CAAC,CAAA;IACxE,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,OAAO,GAAG,aAAa,CAAC,sBAAsB,CAClD,oBAAoB,CACK,CAAA;IAC3B,MAAM,YAAY,GAAG;QACnB,OAAO,EAAE,iCAAuB;QAChC,GAAG,MAAM,CAAC,WAAW,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC;KACX,CAAA;IAE1D,8CAA8C;IAC9C,MAAM,IAAI,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAA;IAChD,MAAM,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IACpC,OAAO,CACL;QACE,8BAAC,sBAAW;YACV,8BAAC,iBAAM,IAAC,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAC/D,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAClC,8BAAC,mBAAQ,IAAC,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,IACvB,CAAC,CACO,CACZ,CAAC,CACK;YACT,8BAAC,yBAAc,qCAA4C,CAC/C;QAEd,yCAAM;QACN,8BAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,gBAAgB,CAAC,CAAA"}
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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const react_1 = __importStar(require("react"));
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const configuration_1 = require("@jbrowse/core/configuration");
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const util_1 = require("@jbrowse/core/util");
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const material_1 = require("@mui/material");
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const mui_1 = require("tss-react/mui");
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const configuration_1 = require("@jbrowse/core/configuration");
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const util_1 = require("@jbrowse/core/util");
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const mobx_react_1 = require("mobx-react");
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const tracks_1 = require("@jbrowse/core/util/tracks");
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// icons
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const Delete_1 = __importDefault(require("@mui/icons-material/Delete"));
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const Add_1 = __importDefault(require("@mui/icons-material//Add"));
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const mobx_react_1 = require("mobx-react");
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const mobx_state_tree_1 = require("mobx-state-tree");
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const tracks_1 = require("@jbrowse/core/util/tracks");
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const useStyles = (0, mui_1.makeStyles)()(theme => ({
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spacing: {
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@@ -170,7 +169,7 @@ const TextIndexingConfig = (0, mobx_react_1.observer)(({ model }) => {
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const TrackAdapterSelector = (0, mobx_react_1.observer)(({ model }) => {
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const { classes } = useStyles();
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const { trackAdapter } = model;
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const { pluginManager } = (0,
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const { pluginManager } = (0, util_1.getEnv)(model);
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const adapters = getAdapterTypes(pluginManager);
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return (react_1.default.createElement(material_1.TextField, { className: classes.spacing, value: (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) !== 'UNKNOWN' ? trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type : '', label: "adapterType", helperText: "Select an adapter type", select: true, fullWidth: true, onChange: event => model.setAdapterHint(event.target.value), SelectProps: {
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// @ts-ignore
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@@ -212,7 +211,7 @@ const TrackTypeSelector = (0, mobx_react_1.observer)(({ model }) => {
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const { classes } = useStyles();
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const session = (0, util_1.getSession)(model);
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const { trackType } = model;
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const trackTypes = getTrackTypes((0,
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const trackTypes = getTrackTypes((0, util_1.getEnv)(session).pluginManager);
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return (react_1.default.createElement(material_1.TextField, { className: classes.spacing, value: trackType, label: "trackType", helperText: "Select a track type", select: true, fullWidth: true, onChange: event => {
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model.setTrackType(event.target.value);
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}, SelectProps: {
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+
{"version":3,"file":"ConfirmTrack.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/ConfirmTrack.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAkD;AAClD,4CAiBsB;AACtB,uCAA0C;AAC1C,+DAA4D;AAC5D,6CAK2B;AAE3B,2CAAqC;AACrC,sDAAmD;AAGnD,QAAQ;AACR,wEAAmD;AACnD,mEAA8C;AAI9C,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;IACD,KAAK,EAAE;QACL,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,MAAM,EAAE;QACN,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,aAAa,CAAC,EACrB,YAAY,EACZ,SAAS,GAIV;;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,YAAY,CAAC,IAAI,KAAK,oBAAoB,CAAC,CAAC,CAAC,CAClD,8BAAC,qBAAU,IAAC,SAAS,EAAE,OAAO,CAAC,OAAO;;QAC3B,4CAAO,SAAS,CAAQ;;QAAgB,GAAG;QACpD,4CAAO,YAAY,CAAC,IAAI,CAAQ;;QAAiB,GAAG;QACpD,4CAAO,MAAA,YAAY,CAAC,UAAU,0CAAE,IAAI,CAAQ;gFAEjC,CACd,CAAC,CAAC,CAAC,CACF,8BAAC,qBAAU,IAAC,SAAS,EAAE,OAAO,CAAC,OAAO;;QACtB,4CAAO,YAAY,CAAC,IAAI,CAAQ;;QAAyB,GAAG;QAC1E,4CAAO,SAAS,CAAQ;gFAEb,CACd,CAAA;AACH,CAAC;AAED;;;;;;;GAOG;AACH,SAAS,kBAAkB,CACzB,YAAkE;IAElE,IAAI,eAAe,GAAG,EAAE,CAAA;IACxB,8DAA8D;IAC9D,MAAM,KAAK,GAAQ,EAAE,CAAA;IACrB,YAAY,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE;;QAC7B,IAAI,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,EAAE;YACrC,IAAI,eAAe,MAAK,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CAAA,EAAE;gBACzD,eAAe,GAAG,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CAAA;gBACnD,KAAK,CAAC,IAAI,CACR,8BAAC,wBAAa,IACZ,GAAG,EAAE,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,EACtC,KAAK,EAAE,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,IAEvC,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CACpB,CACjB,CAAA;aACF;YACD,KAAK,CAAC,IAAI,CACR,8BAAC,mBAAQ,IAAC,GAAG,EAAE,OAAO,CAAC,IAAI,EAAE,KAAK,EAAE,OAAO,CAAC,IAAI,IAC7C,CAAA,MAAA,OAAO,CAAC,eAAe,0CAAE,WAAW;gBACnC,CAAC,CAAC,MAAA,OAAO,CAAC,eAAe,0CAAE,WAAW;gBACtC,CAAC,CAAC,OAAO,CAAC,IAAI,CACP,CACZ,CAAA;SACF;IACH,CAAC,CAAC,CAAA;IACF,OAAO,KAAK,CAAA;AACd,CAAC;AAED,SAAS,eAAe,CAAC,aAA4B;IACnD,OAAO,aAAa,CAAC,sBAAsB,CAAC,SAAS,CAGlD,CAAA;AACL,CAAC;AAED,SAAS,aAAa,CAAC,aAA4B;IACjD,OAAO,aAAa,CAAC,sBAAsB,CAAC,OAAO,CAAuB,CAAA;AAC5E,CAAC;AAED,MAAM,kBAAkB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAA4B,EAAE,EAAE;IAC1E,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACxC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACxC,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,IAAA,gBAAQ,EAAC,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;IAC5D,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,IAAA,gBAAQ,EAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACvD,MAAM,QAAQ,GAAG;QACf;YACE,KAAK,EAAE,qBAAqB;YAC5B,MAAM,EAAE,UAAU;SACnB;QACD;YACE,KAAK,EAAE,0BAA0B;YACjC,MAAM,EAAE,OAAO;SAChB;KACF,CAAA;IACD,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,KAAK,CAAC,mBAAmB,CAAC,EAAE,UAAU,EAAE,OAAO,EAAE,CAAC,CAAA;IACpD,CAAC,EAAE,CAAC,KAAK,EAAE,UAAU,EAAE,OAAO,CAAC,CAAC,CAAA;IAEhC,OAAO,CACL,8BAAC,gBAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,8BAAC,qBAAU,iCAAoC;QAC9C,QAAQ,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,KAAK,EAAE,EAAE,CAAC,CAChC,8BAAC,eAAI,IAAC,MAAM,QAAC,GAAG,EAAE,OAAO,CAAC,KAAK,EAAE,SAAS,EAAE,OAAO,CAAC,IAAI;YACtD,8BAAC,sBAAW;gBACV,8BAAC,qBAAU,QAAE,OAAO,CAAC,KAAK,CAAc;gBACxC,8BAAC,eAAI,IAAC,cAAc;oBACjB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,GAAW,EAAE,GAAW,EAAE,EAAE,CAAC,CAChD,8BAAC,mBAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,cAAc;wBAChC,8BAAC,oBAAS,IACR,KAAK,EAAE,GAAG,EACV,UAAU,EAAE;gCACV,YAAY,EAAE,CACZ,8BAAC,yBAAc,IAAC,QAAQ,EAAC,KAAK;oCAC5B,8BAAC,qBAAU,IACT,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;4CACZ,MAAM,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;gDAC7C,OAAO,CAAC,KAAK,GAAG,CAAA;4CAClB,CAAC,CAAC,CAAA;4CACF,KAAK,KAAK,CAAC;gDACT,CAAC,CAAC,aAAa,CAAC,OAAO,CAAC;gDACxB,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;wCACzB,CAAC;wCAED,8BAAC,gBAAU,OAAG,CACH,CACE,CAClB;6BACF,GACD,CACO,CACZ,CAAC;oBACF,8BAAC,mBAAQ,IAAC,cAAc;wBACtB,8BAAC,oBAAS,IACR,KAAK,EAAE,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,EACpC,WAAW,EAAC,SAAS,EACrB,QAAQ,EAAE,KAAK,CAAC,EAAE;gCAChB,KAAK,KAAK,CAAC;oCACT,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC;oCAC/B,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;4BACnC,CAAC,EACD,UAAU,EAAE;gCACV,YAAY,EAAE,CACZ,8BAAC,yBAAc,IAAC,QAAQ,EAAC,KAAK;oCAC5B,8BAAC,qBAAU,IACT,OAAO,EAAE,GAAG,EAAE;4CACZ,IAAI,KAAK,KAAK,CAAC,EAAE;gDACf,MAAM,OAAO,GAAa,UAAU,CAAA;gDACpC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;gDACpB,aAAa,CAAC,OAAO,CAAC,CAAA;gDACtB,SAAS,CAAC,EAAE,CAAC,CAAA;6CACd;iDAAM;gDACL,MAAM,OAAO,GAAa,OAAO,CAAA;gDACjC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;gDACpB,UAAU,CAAC,OAAO,CAAC,CAAA;gDACnB,SAAS,CAAC,EAAE,CAAC,CAAA;6CACd;wCACH,CAAC,EACD,QAAQ,EAAE,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,KAAK,EAAE,CAAC,CAAC,CAAC,MAAM,KAAK,EAAE,EACrD,KAAK,EAAC,WAAW,iBACJ,qBAAqB;wCAElC,8BAAC,aAAO,OAAG,CACA,CACE,CAClB;6BACF,GACD,CACO,CACN,CACK,CACT,CACR,CAAC,CACI,CACT,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,oBAAoB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAA4B,EAAE,EAAE;IAC5E,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IAC9B,MAAM,EAAE,aAAa,E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IAAI,KAAK,IAAI,oBAAoB,CAAC,CAAC,CAAC,CAC7C,8BAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK,GAAI,CACrC,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,YAAY,CAAC,CAAA"}
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@@ -29,10 +29,10 @@ Object.defineProperty(exports, "__esModule", { value: true });
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29
29
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const react_1 = __importStar(require("react"));
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30
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const material_1 = require("@mui/material");
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const mui_1 = require("tss-react/mui");
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32
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+
const mobx_state_tree_1 = require("mobx-state-tree");
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const util_1 = require("@jbrowse/core/util");
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const configuration_1 = require("@jbrowse/core/configuration");
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34
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const mobx_react_1 = require("mobx-react");
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35
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-
const mobx_state_tree_1 = require("mobx-state-tree");
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36
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// locals
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37
37
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const ConfirmTrack_1 = __importDefault(require("./ConfirmTrack"));
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38
38
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const TrackSourceSelect_1 = __importDefault(require("./TrackSourceSelect"));
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@@ -61,9 +61,8 @@ const steps = ['Enter track data', 'Confirm track type'];
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61
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function AddTrackWorkflow({ model }) {
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62
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const [activeStep, setActiveStep] = (0, react_1.useState)(0);
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63
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const { classes } = useStyles();
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64
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-
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65
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-
const {
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66
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-
const { jobsManager } = rootModel;
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64
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+
// eslint-disable-next-line @typescript-eslint/no-explicit-any
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65
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+
const { jobsManager } = (0, mobx_state_tree_1.getRoot)(model);
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67
66
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const session = (0, util_1.getSession)(model);
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68
67
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const { assembly, trackAdapter, trackData, trackName, trackType, textIndexTrack, textIndexingConf, } = model;
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69
68
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const [trackErrorMessage, setTrackErrorMessage] = (0, react_1.useState)();
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"DefaultAddTrackWorkflow.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAQsB;AACtB,uCAA0C;
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1
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+
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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const react_1 = __importStar(require("react"));
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const mui_1 = require("tss-react/mui");
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const material_1 = require("@mui/material");
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const mui_1 = require("tss-react/mui");
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const mobx_react_1 = require("mobx-react");
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const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
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const util_1 = require("@jbrowse/core/util");
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const configuration_1 = require("@jbrowse/core/configuration");
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// icons
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const Clear_1 = __importDefault(require("@mui/icons-material/Clear"));
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const
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const Menu_2 = __importDefault(require("@mui/icons-material/Menu"));
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const ShoppingCart_1 = __importDefault(require("@mui/icons-material/ShoppingCart"));
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const Icons_1 = require("@jbrowse/core/ui/Icons");
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// other
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const Menu_2 = __importDefault(require("@jbrowse/core/ui/Menu"));
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const util_1 = require("@jbrowse/core/util");
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const configuration_1 = require("@jbrowse/core/configuration");
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const mobx_react_1 = require("mobx-react");
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const mobx_state_tree_1 = require("mobx-state-tree");
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// lazy components
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const CloseConnectionDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./CloseConnectionDialog'))));
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const DeleteConnectionDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./DeleteConnectionDialog'))));
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@@ -131,11 +129,11 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
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},
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...assemblyMenuItems,
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];
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const items = (0,
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const items = (0, util_1.getEnv)(model).pluginManager.evaluateExtensionPoint('TrackSelector-multiTrackMenuItems', [], { session });
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return (react_1.default.createElement("div", { ref: ref => setHeaderHeight((ref === null || ref === void 0 ? void 0 : ref.getBoundingClientRect().height) || 0), "data-testid": "hierarchical_track_selector" },
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react_1.default.createElement("div", { style: { display: 'flex' } },
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(0, util_1.isSessionWithAddTracks)(session) && (react_1.default.createElement(material_1.IconButton, { className: classes.menuIcon, onClick: event => setMenuEl(event.currentTarget) },
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react_1.default.createElement(
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react_1.default.createElement(Menu_2.default, null))),
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session.makeConnection && (react_1.default.createElement(material_1.IconButton, { className: classes.menuIcon, onClick: event => setConnectionEl(event.currentTarget) },
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react_1.default.createElement(Icons_1.Cable, null))),
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model.selection.length ? (react_1.default.createElement(material_1.IconButton, { className: classes.menuIcon, onClick: event => setSelectionEl(event.currentTarget) },
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@@ -146,15 +144,15 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
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react_1.default.createElement(material_1.IconButton, { color: "secondary", onClick: model.clearFilterText },
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react_1.default.createElement(Clear_1.default, null)))),
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} })),
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react_1.default.createElement(
|
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react_1.default.createElement(Menu_1.default, { anchorEl: connectionEl, open: Boolean(connectionEl), onMenuItemClick: (_, callback) => {
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callback();
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|
setConnectionEl(undefined);
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}, onClose: () => setConnectionEl(undefined), menuItems: connectionMenuItems }),
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react_1.default.createElement(
|
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react_1.default.createElement(Menu_1.default, { anchorEl: menuEl, open: Boolean(menuEl), onMenuItemClick: (_, callback) => {
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callback();
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setMenuEl(undefined);
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}, onClose: () => setMenuEl(undefined), menuItems: menuItems }),
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react_1.default.createElement(
|
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react_1.default.createElement(Menu_1.default, { anchorEl: selectionEl, open: Boolean(selectionEl), onMenuItemClick: (_, callback) => {
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callback();
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setSelectionEl(undefined);
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}, onClose: () => setSelectionEl(undefined), menuItems: [
|
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/Header.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuD;AACvD,uCAA0C;AAC1C,
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1
|
+
{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/Header.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuD;AACvD,4CAA4E;AAC5E,uCAA0C;AAC1C,2CAAqC;AACrC,iEAA6D;AAC7D,6CAM2B;AAC3B,+DAGoC;AAEpC,QAAQ;AACR,sEAAiD;AACjD,oEAA+C;AAC/C,oFAA+D;AAC/D,kDAA8C;AAK9C,kBAAkB;AAClB,MAAM,qBAAqB,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,yBAAyB,GAAC,CAAC,CAAA;AAC3E,MAAM,sBAAsB,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,0BAA0B,GAAC,CAAC,CAAA;AAC7E,MAAM,uBAAuB,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,2BAA2B,GAAC,CAAC,CAAA;AAC/E,MAAM,uBAAuB,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,2BAA2B,GAAC,CAAC,CAAA;AAE/E,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,SAAS,EAAE;QACT,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,QAAQ,EAAE;QACR,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC7B,YAAY,EAAE,CAAC;KAChB;CACF,CAAC,CAAC,CAAA;AAcH,SAAS,+BAA+B,CAAC,EACvC,KAAK,EACL,eAAe,EACf,cAAc,EACd,WAAW,GAMZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,IAAA,gBAAQ,GAAqB,CAAA;IACrE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,GAAqB,CAAA;IACnE,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,GAAqB,CAAA;IACzD,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,IAAA,gBAAQ,GAAa,CAAA;IACvD,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,IAAA,gBAAQ,GAAiB,CAAA;IACzE,MAAM,CAAC,qBAAqB,EAAE,wBAAwB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACzE,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACvE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE/B,SAAS,eAAe,CACtB,cAAqC,EACrC,kBAA4B;QAE5B,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,cAAc,EAAE,MAAM,CAAC,CAAA;QAEnD,aAAa;QACb,MAAM,MAAM,GAAG,OAAO,CAAC,wBAAwB,CAAC,cAAc,CAAC,CAAA;QAC/D,IAAI,MAAM,EAAE;YACV,MAAM,CAAC,qBAAqB,EAAE,oBAAoB,CAAC,GAAG,MAAM,CAAA;YAC5D,IAAI,MAAM,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC,MAAM,GAAG,CAAC,EAAE;gBAChD,YAAY,CAAC;oBACX,cAAc;oBACd,qBAAqB;oBACrB,oBAAoB;oBACpB,IAAI;iBACL,CAAC,CAAA;aACH;iBAAM;gBACL,qBAAqB,EAAE,CAAA;aACxB;SACF;QACD,IAAI,kBAAkB,EAAE;YACtB,mBAAmB,CAAC,EAAE,IAAI,EAAE,cAAc,EAAE,CAAC,CAAA;SAC9C;IACH,CAAC;IAED,MAAM,mBAAmB,GAAG;QAC1B;YACE,KAAK,EAAE,4BAA4B;YACnC,OAAO,EAAE,GAAG,EAAE,CAAC,uBAAuB,CAAC,IAAI,CAAC;SAC7C;KACF,CAAA;IAED,IAAI,IAAA,oCAA6B,EAAC,OAAO,CAAC,EAAE;QAC1C,mBAAmB,CAAC,OAAO,CAAC;YAC1B,KAAK,EAAE,gBAAgB;YACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;oBACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,qBAAqB,EAAE,qBAAqB,CAAC,CAChE,CAAA;iBACF;YACH,CAAC;SACF,CAAC,CAAA;QAEF,mBAAmB,CAAC,IAAI,CAAC;YACvB,KAAK,EAAE,uBAAuB;YAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,wBAAwB,CAAC,IAAI,CAAC;SAC9C,CAAC,CAAA;KACH;IAED,MAAM,iBAAiB,GACrB,aAAa,CAAC,MAAM,GAAG,CAAC;QACtB,CAAC,CAAC;YACE;gBACE,KAAK,EAAE,oBAAoB;gBAC3B,OAAO,EAAE,aAAa,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC;oBACzC,KAAK,EAAE,IAAI;oBACX,OAAO,EAAE,GAAG,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC;iBACnC,CAAC,CAAC;aACJ;SACF;QACH,CAAC,CAAC,EAAE,CAAA;IAER,MAAM,SAAS,GAAG;QAChB;YACE,KAAK,EAAE,cAAc;YACrB,OAAO,EAAE,GAAG,EAAE;gBACZ,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;oBACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,gBAAgB,EAAE,gBAAgB,EAAE;wBACpD,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,EAAE;qBACpB,CAAC,CACH,CAAA;iBACF;YACH,CAAC;SACF;QAED,GAAG,iBAAiB;KACrB,CAAA;IAED,MAAM,KAAK,GAAG,IAAA,aAAM,EAAC,KAAK,CAAC,CAAC,aAAa,CAAC,sBAAsB,CAC9D,mCAAmC,EACnC,EAAE,EACF,EAAE,OAAO,EAAE,CACE,CAAA;IACf,OAAO,CACL,uCACE,GAAG,EAAE,GAAG,CAAC,EAAE,CAAC,eAAe,CAAC,CAAA,GAAG,aAAH,GAAG,uBAAH,GAAG,CAAE,qBAAqB,GAAG,MAAM,KAAI,CAAC,CAAC,iBACzD,6BAA6B;QAEzC,uCAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;YAC5B,IAAA,6BAAsB,EAAC,OAAO,CAAC,IAAI,CAClC,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,aAAa,CAAC;gBAEhD,8BAAC,cAAQ,OAAG,CACD,CACd;YAEA,OAAO,CAAC,cAAc,IAAI,CACzB,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,eAAe,CAAC,KAAK,CAAC,aAAa,CAAC;gBAEtD,8BAAC,aAAK,OAAG,CACE,CACd;YAEA,KAAK,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,CACxB,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,cAAc,CAAC,KAAK,CAAC,aAAa,CAAC;gBAErD,8BAAC,gBAAK,IAAC,YAAY,EAAE,KAAK,CAAC,SAAS,CAAC,MAAM,EAAE,KAAK,EAAC,SAAS;oBAC1D,8BAAC,sBAAgB,OAAG,CACd,CACG,CACd,CAAC,CAAC,CAAC,IAAI;YAER,8BAAC,oBAAS,IACR,SAAS,EAAE,OAAO,CAAC,SAAS,EAC5B,KAAK,EAAC,eAAe,EACrB,KAAK,EAAE,KAAK,CAAC,UAAU,EACvB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC1D,SAAS,QACT,UAAU,EAAE;oBACV,YAAY,EAAE,CACZ,8BAAC,yBAAc,IAAC,QAAQ,EAAC,KAAK;wBAC5B,8BAAC,qBAAU,IAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAE,KAAK,CAAC,eAAe;4BAC1D,8BAAC,eAAS,OAAG,CACF,CACE,CAClB;iBACF,GACD,CACE;QACN,8BAAC,cAAW,IACV,QAAQ,EAAE,YAAY,EACtB,IAAI,EAAE,OAAO,CAAC,YAAY,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE;gBAC/B,QAAQ,EAAE,CAAA;gBACV,eAAe,CAAC,SAAS,CAAC,CAAA;YAC5B,CAAC,EACD,OAAO,EAAE,GAAG,EAAE,CAAC,eAAe,CAAC,SAAS,CAAC,EACzC,SAAS,EAAE,mBAAmB,GAC9B;QACF,8BAAC,cAAW,IACV,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,OAAO,CAAC,MAAM,CAAC,EACrB,eAAe,EAAE,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE;gBAC/B,QAAQ,EAAE,CAAA;gBACV,SAAS,CAAC,SAAS,CAAC,CAAA;YA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|
|
@@ -4,27 +4,20 @@ exports.generateHierarchy = void 0;
|
|
|
4
4
|
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
5
5
|
const configuration_1 = require("@jbrowse/core/configuration");
|
|
6
6
|
const util_1 = require("@jbrowse/core/util");
|
|
7
|
+
const tracks_1 = require("@jbrowse/core/util/tracks");
|
|
7
8
|
const mst_1 = require("@jbrowse/core/util/types/mst");
|
|
8
9
|
function hasAnyOverlap(a1 = [], a2 = []) {
|
|
9
10
|
return !!a1.find(value => a2.includes(value));
|
|
10
11
|
}
|
|
11
|
-
function passesFilter(filter, config) {
|
|
12
|
+
function passesFilter(filter, config, session) {
|
|
12
13
|
const categories = (0, configuration_1.readConfObject)(config, 'category');
|
|
13
14
|
const filterLower = filter.toLowerCase();
|
|
14
|
-
return (getTrackName(config).toLowerCase().includes(filterLower) ||
|
|
15
|
+
return ((0, tracks_1.getTrackName)(config, session).toLowerCase().includes(filterLower) ||
|
|
15
16
|
!!(categories === null || categories === void 0 ? void 0 : categories.filter(c => c.toLowerCase().includes(filterLower)).length));
|
|
16
17
|
}
|
|
17
|
-
function getTrackName(config) {
|
|
18
|
-
if (!config.trackId) {
|
|
19
|
-
throw new Error('not a track');
|
|
20
|
-
}
|
|
21
|
-
return ((0, configuration_1.readConfObject)(config, 'name') ||
|
|
22
|
-
`Reference sequence (${(0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(config), 'displayName') ||
|
|
23
|
-
(0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(config), 'name')})`);
|
|
24
|
-
}
|
|
25
18
|
function filterTracks(tracks, self, assemblyName) {
|
|
26
19
|
const { assemblyManager } = (0, util_1.getSession)(self);
|
|
27
|
-
const { pluginManager } = (0,
|
|
20
|
+
const { pluginManager } = (0, util_1.getEnv)(self);
|
|
28
21
|
const assembly = assemblyManager.get(assemblyName);
|
|
29
22
|
if (!assembly) {
|
|
30
23
|
return [];
|
|
@@ -42,8 +35,9 @@ function filterTracks(tracks, self, assemblyName) {
|
|
|
42
35
|
function generateHierarchy(model, trackConfigurations, collapsed) {
|
|
43
36
|
const hierarchy = { children: [] };
|
|
44
37
|
const { filterText, view } = model;
|
|
38
|
+
const session = (0, util_1.getSession)(model);
|
|
45
39
|
trackConfigurations
|
|
46
|
-
.filter(conf => passesFilter(filterText, conf))
|
|
40
|
+
.filter(conf => passesFilter(filterText, conf, session))
|
|
47
41
|
.forEach(conf => {
|
|
48
42
|
// copy the categories since this array can be mutated downstream
|
|
49
43
|
const categories = [...((0, configuration_1.readConfObject)(conf, 'category') || [])];
|
|
@@ -77,7 +71,7 @@ function generateHierarchy(model, trackConfigurations, collapsed) {
|
|
|
77
71
|
// using splice here tries to group leaf nodes above hierarchical nodes
|
|
78
72
|
currLevel.children.splice(currLevel.children.findIndex(elt => elt.children.length), 0, {
|
|
79
73
|
id: conf.trackId,
|
|
80
|
-
name: getTrackName(conf),
|
|
74
|
+
name: (0, tracks_1.getTrackName)(conf, session),
|
|
81
75
|
conf,
|
|
82
76
|
checked: !!tracks.find(f => f.configuration === conf),
|
|
83
77
|
children: [],
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":";;;AAAA,
|
|
1
|
+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":";;;AAAA,qDAA8D;AAC9D,+DAIoC;AACpC,6CAA6E;AAC7E,sDAAwD;AACxD,sDAAwD;AAGxD,SAAS,aAAa,CAAI,KAAU,EAAE,EAAE,KAAU,EAAE;IAClD,OAAO,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,SAAS,YAAY,CACnB,MAAc,EACd,MAA6B,EAC7B,OAA6B;IAE7B,MAAM,UAAU,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,UAAU,CAAyB,CAAA;IAC7E,MAAM,WAAW,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;IACxC,OAAO,CACL,IAAA,qBAAY,EAAC,MAAM,EAAE,OAAO,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;QACjE,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,EAAE,MAAM,CAAA,CACxE,CAAA;AACH,CAAC;AAWD,SAAS,YAAY,CACnB,MAA+B,EAC/B,IAAgC,EAChC,YAAoB;IAEpB,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;IAC5C,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,IAAI,CAAC,CAAA;IACtC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAElD,IAAI,CAAC,QAAQ,EAAE;QACb,OAAO,EAAE,CAAA;KACV;IACD,MAAM,EAAE,UAAU,EAAE,GAAG,QAAQ,CAAA;IAC/B,OAAO,MAAM;SACV,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,aAAa,CAAC,UAAU,EAAE,IAAA,8BAAc,EAAC,CAAC,EAAE,eAAe,CAAC,CAAC,CAAC;SAC1E,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,EAAE,YAAY,EAAE,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClE,MAAM,cAAc,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACxE,MAAM,aAAa,GAAG,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACrE,OAAO,aAAa,CAAC,cAAc,EAAE,aAAa,CAAC,CAAA;IACrD,CAAC,CAAC,CAAA;AACN,CAAC;AAED,SAAgB,iBAAiB,CAC/B,KAAqC,EACrC,mBAA4C,EAC5C,SAAwD;IAExD,MAAM,SAAS,GAAG,EAAE,QAAQ,EAAE,EAAgB,EAAc,CAAA;IAC5D,MAAM,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAClC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAEjC,mBAAmB;SAChB,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE,IAAI,EAAE,OAAO,CAAC,CAAC;SACvD,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,iEAAiE;QACjE,MAAM,UAAU,GAAG,CAAC,GAAG,CAAC,IAAA,8BAAc,EAAC,IAAI,EAAE,UAAU,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;QAEhE,uEAAuE;QACvE,kEAAkE;QAClE,0BAA0B;QAC1B,IAAI,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAE;YACzC,UAAU,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;SACtC;QAED,IAAI,SAAS,GAAG,SAAS,CAAA;QAEzB,wDAAwD;QACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC1C,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YAC9B,MAAM,GAAG,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAA;YAC7D,MAAM,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;YAC/C,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,CAAC,GAAG;oBACR,QAAQ,EAAE,EAAE;oBACZ,IAAI,EAAE,QAAQ;oBACd,EAAE;oBACF,eAAe,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC;iBACpC,CAAA;gBACD,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBAC1B,SAAS,GAAG,CAAC,CAAA;aACd;iBAAM;gBACL,SAAS,GAAG,GAAG,CAAA;aAChB;SACF;QACD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAoD,CAAA;QAExE,uEAAuE;QACvE,SAAS,CAAC,QAAQ,CAAC,MAAM,CACvB,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,EACxD,CAAC,EACD;YACE,EAAE,EAAE,IAAI,CAAC,OAAO;YAChB,IAAI,EAAE,IAAA,qBAAY,EAAC,IAAI,EAAE,OAAO,CAAC;YACjC,IAAI;YACJ,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,KAAK,IAAI,CAAC;YACrD,QAAQ,EAAE,EAAE;SACb,CACF,CAAA;IACH,CAAC,CAAC,CAAA;IAEJ,OAAO,SAAS,CAAC,QAAQ,CAAA;AAC3B,CAAC;AA3DD,8CA2DC;AAED,SAAwB,gBAAgB,CAAC,aAA4B;IACnE,OAAO,uBAAK;SACT,KAAK,CAAC,iCAAiC,EAAE;QACxC,EAAE,EAAE,eAAS;QACb,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,iCAAiC,CAAC;QACtD,SAAS,EAAE,uBAAK,CAAC,GAAG,CAAC,uBAAK,CAAC,OAAO,CAAC;QACnC,UAAU,EAAE,EAAE;QACd,IAAI,EAAE,uBAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;KACF,CAAC;SACD,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,EAA6B;KACzC,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,cAAc,CAAC,GAA4B;YACzC,IAAI,CAAC,SAAS,GAAG,CAAC,GAAG,IAAI,CAAC,SAAS,EAAE,GAAG,GAAG,CAAC,CAAA;QAC9C,CAAC;QACD,mBAAmB,CAAC,GAA4B;YAC9C,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;QAC/D,CAAC;QACD,cAAc;YACZ,IAAI,CAAC,SAAS,GAAG,EAAE,CAAA;QACrB,CAAC;QACD,OAAO,CAAC,IAAa;YACnB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;QACD,cAAc,CAAC,QAAgB;YAC7B,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QAC7D,CAAC;QACD,eAAe;YACb,IAAI,CAAC,UAAU,GAAG,EAAE,CAAA;QACtB,CAAC;QACD,aAAa,CAAC,OAAe;YAC3B,IAAI,CAAC,UAAU,GAAG,OAAO,CAAA;QAC3B,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,kBAAkB,CAAC,YAAoB;YACrC,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;YAC5C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,MAAM,SAAS,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,aAAa,CAAC,QAAQ,CAAA;YAClD,MAAM,QAAQ,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;YAC1D,IAAI,CAAC,SAAS,EAAE;gBACd,OAAO,SAAS,CAAA;aACjB;YACD,KAAK,MAAM,OAAO,IAAI,SAAS,CAAC,QAAQ,EAAE;gBACxC,IAAI,QAAQ,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,OAAO,CAAC,IAAI,CAAC,EAAE;oBAC5D,OAAO,SAAS,CAAA;iBACjB;aACF;QACH,CAAC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@@ -57,7 +57,7 @@ const useStyles = (0, mui_1.makeStyles)()(() => ({
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57
57
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function PluginCard({ plugin, model, adminMode, }) {
|
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58
58
|
const { classes } = useStyles();
|
|
59
59
|
const session = (0, util_1.getSession)(model);
|
|
60
|
-
const { pluginManager } = (0,
|
|
60
|
+
const { pluginManager } = (0, util_1.getEnv)(model);
|
|
61
61
|
const isInstalled = Boolean(pluginManager.runtimePluginDefinitions.find(def => def.url === plugin.url));
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62
62
|
const [tempDisabled, setTempDisabled] = (0, react_1.useState)(false);
|
|
63
63
|
const disableButton = isInstalled || tempDisabled;
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|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"PluginCard.js","sourceRoot":"","sources":["../../../src/PluginStoreWidget/components/PluginCard.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;
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1
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+
{"version":3,"file":"PluginCard.js","sourceRoot":"","sources":["../../../src/PluginStoreWidget/components/PluginCard.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,qDAA2C;AAC3C,6CAAuD;AACvD,oDAGiC;AACjC,4CAOsB;AACtB,uCAA0C;AAE1C,QAAQ;AACR,wEAAmD;AACnD,kEAA6C;AAC7C,sEAAiD;AAGjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,IAAI,EAAE;QACJ,MAAM,EAAE,KAAK;KACd;IACD,IAAI,EAAE;QACJ,UAAU,EAAE,OAAO;QACnB,WAAW,EAAE,OAAO;KACrB;IACD,IAAI,EAAE;QACJ,UAAU,EAAE,GAAG;KAChB;IACD,SAAS,EAAE;QACT,OAAO,EAAE,MAAM;QACf,UAAU,EAAE,QAAQ;QACpB,MAAM,EAAE,WAAW;KACpB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,UAAU,CAAC,EAClB,MAAM,EACN,KAAK,EACL,SAAS,GAKV;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,WAAW,GAAG,OAAO,CACzB,aAAa,CAAC,wBAAwB,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,KAAK,MAAM,CAAC,GAAG,CAAC,CAC3E,CAAA;IACD,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACvD,MAAM,aAAa,GAAG,WAAW,IAAI,YAAY,CAAA;IAEjD,8DAA8D;IAC9D,MAAM,SAAS,GAAG,IAAA,2BAAS,EAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC1C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,CAAA;IAE7B,OAAO,CACL,8BAAC,eAAI,IAAC,OAAO,EAAC,UAAU,EAAC,GAAG,EAAE,MAAM,CAAC,IAAI,EAAE,SAAS,EAAE,OAAO,CAAC,IAAI;QAChE,8BAAC,sBAAW;YACV,uCAAK,SAAS,EAAE,OAAO,CAAC,SAAS;gBAC/B,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI;oBACtB,8BAAC,eAAI,IACH,IAAI,EAAE,GAAG,MAAM,CAAC,QAAQ,SAAS,EACjC,MAAM,EAAC,QAAQ,EACf,GAAG,EAAC,UAAU,IAEb,MAAM,CAAC,IAAI,CACP,CACI,CACT;YACN,uCAAK,SAAS,EAAE,OAAO,CAAC,SAAS;gBAC/B,8BAAC,gBAAU,IAAC,KAAK,EAAE,EAAE,WAAW,EAAE,OAAO,EAAE,GAAI;gBAC/C,8BAAC,qBAAU,QAAE,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAc,CAChD;YACN,8BAAC,qBAAU,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,mBAA2B;YAC9D,8BAAC,qBAAU,QAAE,MAAM,CAAC,WAAW,CAAc,CACjC;QACd,8BAAC,sBAAW;YACV,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,aAAa,EACvB,SAAS,EAAE,WAAW,CAAC,CAAC,CAAC,8BAAC,eAAS,OAAG,CAAC,CAAC,CAAC,8BAAC,aAAO,OAAG,EACpD,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,SAAS,EAAE;wBACb,OAAO,CAAC,SAAS,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,IAAI,EAAE,GAAG,EAAE,MAAM,CAAC,GAAG,EAAE,CAAC,CAAA;qBAC1D;yBAAM,IAAI,IAAA,mCAA2B,EAAC,OAAO,CAAC,EAAE;wBAC/C,OAAO,CAAC,gBAAgB,CAAC,MAAM,CAAC,CAAA;qBACjC;oBACD,eAAe,CAAC,IAAI,CAAC,CAAA;gBACvB,CAAC,IAEA,WAAW,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,SAAS,CAC/B,CACG,CACT,CACR,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,UAAU,CAAC,CAAA"}
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|
@@ -1,9 +1,8 @@
|
|
|
1
1
|
import React, { useState } from 'react';
|
|
2
|
-
import { getSession } from '@jbrowse/core/util';
|
|
2
|
+
import { getSession, getEnv } from '@jbrowse/core/util';
|
|
3
3
|
import { Button, Step, StepContent, StepLabel, Stepper, Typography, } from '@mui/material';
|
|
4
4
|
import { makeStyles } from 'tss-react/mui';
|
|
5
5
|
import { observer } from 'mobx-react';
|
|
6
|
-
import { getEnv } from 'mobx-state-tree';
|
|
7
6
|
// locals
|
|
8
7
|
import ConfigureConnection from './ConfigureConnection';
|
|
9
8
|
import ConnectionTypeSelect from './ConnectionTypeSelect';
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"AddConnectionWidget.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/AddConnectionWidget.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;
|
|
1
|
+
{"version":3,"file":"AddConnectionWidget.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/AddConnectionWidget.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAA;AACvD,OAAO,EACL,MAAM,EACN,IAAI,EACJ,WAAW,EACX,SAAS,EACT,OAAO,EACP,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAGrC,SAAS;AACT,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AAGzD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;IACD,OAAO,EAAE;QACP,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;KAClD;IACD,MAAM,EAAE;QACN,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC3B,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC9B;IACD,gBAAgB,EAAE;QAChB,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,KAAK,GAAG,CAAC,0BAA0B,EAAE,sBAAsB,CAAC,CAAA;AAElE,SAAS,mBAAmB,CAAC,EAAE,KAAK,EAAsB;IACxD,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,EAAkB,CAAA;IACtE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,EAAyB,CAAA;IACvE,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IAEjC,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,OAAO,CAAC,CAAA;IAEzC,SAAS,WAAW;QAClB,QAAQ,UAAU,EAAE;YAClB,KAAK,CAAC;gBACJ,OAAO,CACL,oBAAC,oBAAoB,IACnB,qBAAqB,EACnB,aAAa,CAAC,sBAAsB,CAClC,YAAY,CACO,EAEvB,cAAc,EAAE,cAAc,EAC9B,iBAAiB,EAAE,CAAC,CAAC,EAAE;wBACrB,iBAAiB,CAAC,CAAC,CAAC,CAAA;wBACpB,IAAI,CAAC,EAAE;4BACL,cAAc,CACZ,CAAC,CAAC,YAAY,CAAC,MAAM,CACnB;gCACE,YAAY,EAAE,GAAG,CAAC,CAAC,IAAI,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE;6BACxC,EACD,MAAM,CAAC,KAAK,CAAC,CACd,CACF,CAAA;yBACF;oBACH,CAAC,GACD,CACH,CAAA;YACH,KAAK,CAAC;gBACJ,OAAO,cAAc,IAAI,WAAW,CAAC,CAAC,CAAC,CACrC,oBAAC,mBAAmB,IAClB,cAAc,EAAE,cAAc,EAC9B,KAAK,EAAE,WAAW,EAClB,OAAO,EAAE,OAAO,GAChB,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;YAEV;gBACE,OAAO,oBAAC,UAAU,uBAA0B,CAAA;SAC/C;IACH,CAAC;IAED,SAAS,UAAU;QACjB,IAAI,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE;YACnC,YAAY,EAAE,CAAA;SACf;aAAM;YACL,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;SAC9B;IACH,CAAC;IAED,SAAS,UAAU;QACjB,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;IAC/B,CAAC;IAED,SAAS,YAAY;QACnB,MAAM,cAAc,GAAG,OAAO,CAAC,iBAAiB,CAAC,WAAW,CAAC,CAAA;QAC7D,IAAI,OAAO,CAAC,cAAc,EAAE;YAC1B,OAAO,CAAC,cAAc,CAAC,cAAc,CAAC,CAAA;SACvC;QACD,OAAO,CAAC,UAAU,CAAC,KAAK,CAAC,CAAA;IAC3B,CAAC;IAED,SAAS,gBAAgB;QACvB,OAAO,CACL,CAAC,UAAU,KAAK,CAAC,IAAI,cAAc,CAAC,IAAI,CAAC,UAAU,KAAK,CAAC,IAAI,WAAW,CAAC,CAC1E,CAAA;IACH,CAAC;IAED,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,oBAAC,OAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,UAAU,EAAE,UAAU,EACtB,WAAW,EAAC,UAAU,IAErB,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAClB,oBAAC,IAAI,IAAC,GAAG,EAAE,KAAK;YACd,oBAAC,SAAS,QAAE,KAAK,CAAa;YAC9B,oBAAC,WAAW;gBACT,WAAW,EAAE;gBACd,6BAAK,SAAS,EAAE,OAAO,CAAC,gBAAgB;oBACtC,oBAAC,MAAM,IACL,QAAQ,EAAE,UAAU,KAAK,CAAC,EAC1B,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,WAGlB;oBACT,oBAAC,MAAM,IACL,QAAQ,EAAE,CAAC,gBAAgB,EAAE,EAC7B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,iBACb,mBAAmB,IAE9B,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,CAC9C,CACL,CACM,CACT,CACR,CAAC,CACM,CACN,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,mBAAmB,CAAC,CAAA"}
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@@ -1,8 +1,7 @@
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1
1
|
import React from 'react';
|
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2
2
|
import { observer } from 'mobx-react';
|
|
3
3
|
import { FormControl, FormHelperText, Select, MenuItem } from '@mui/material';
|
|
4
|
-
import { useLocalStorage } from '@jbrowse/core/util';
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5
|
-
import { getEnv } from 'mobx-state-tree';
|
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4
|
+
import { getEnv, useLocalStorage } from '@jbrowse/core/util';
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|
6
5
|
import DefaultAddTrackWorkflow from './DefaultAddTrackWorkflow';
|
|
7
6
|
function AddTrackSelector({ model }) {
|
|
8
7
|
const [val, setVal] = useLocalStorage('trackSelector-choice', 'Default');
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@@ -1 +1 @@
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1
|
-
{"version":3,"file":"AddTrackWidget.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/AddTrackWidget.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,WAAW,EAAE,cAAc,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAE7E,OAAO,EAAE,
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1
|
+
{"version":3,"file":"AddTrackWidget.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/AddTrackWidget.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,WAAW,EAAE,cAAc,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAE7E,OAAO,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAA;AAI5D,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAE/D,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAA4B;IAC3D,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,eAAe,CAAC,sBAAsB,EAAE,SAAS,CAAC,CAAA;IACxE,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,OAAO,GAAG,aAAa,CAAC,sBAAsB,CAClD,oBAAoB,CACK,CAAA;IAC3B,MAAM,YAAY,GAAG;QACnB,OAAO,EAAE,uBAAuB;QAChC,GAAG,MAAM,CAAC,WAAW,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC;KACX,CAAA;IAE1D,8CAA8C;IAC9C,MAAM,IAAI,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAA;IAChD,MAAM,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IACpC,OAAO,CACL;QACE,oBAAC,WAAW;YACV,oBAAC,MAAM,IAAC,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAC/D,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAClC,oBAAC,QAAQ,IAAC,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,IACvB,CAAC,CACO,CACZ,CAAC,CACK;YACT,oBAAC,cAAc,qCAA4C,CAC/C;QAEd,+BAAM;QACN,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACJ,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,gBAAgB,CAAC,CAAA"}
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@@ -1,14 +1,13 @@
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1
1
|
import React, { useEffect, useState } from 'react';
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2
|
-
import { readConfObject } from '@jbrowse/core/configuration';
|
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3
|
-
import { supportedIndexingAdapters, getSession, isElectron, } from '@jbrowse/core/util';
|
|
4
2
|
import { Card, CardContent, Checkbox, FormControl, FormControlLabel, IconButton, InputLabel, InputAdornment, ListSubheader, Link, List, ListItem, MenuItem, Paper, TextField, Typography, } from '@mui/material';
|
|
5
3
|
import { makeStyles } from 'tss-react/mui';
|
|
4
|
+
import { readConfObject } from '@jbrowse/core/configuration';
|
|
5
|
+
import { supportedIndexingAdapters, getSession, getEnv, isElectron, } from '@jbrowse/core/util';
|
|
6
|
+
import { observer } from 'mobx-react';
|
|
7
|
+
import { UNKNOWN } from '@jbrowse/core/util/tracks';
|
|
6
8
|
// icons
|
|
7
9
|
import DeleteIcon from '@mui/icons-material/Delete';
|
|
8
10
|
import AddIcon from '@mui/icons-material//Add';
|
|
9
|
-
import { observer } from 'mobx-react';
|
|
10
|
-
import { getEnv } from 'mobx-state-tree';
|
|
11
|
-
import { UNKNOWN } from '@jbrowse/core/util/tracks';
|
|
12
11
|
const useStyles = makeStyles()(theme => ({
|
|
13
12
|
spacing: {
|
|
14
13
|
marginBottom: theme.spacing(3),
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ConfirmTrack.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/ConfirmTrack.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EACL,yBAAyB,EACzB,UAAU,EACV,UAAU,GACX,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EACL,IAAI,EACJ,WAAW,EACX,QAAQ,EACR,WAAW,EACX,gBAAgB,EAChB,UAAU,EACV,UAAU,EACV,cAAc,EACd,aAAa,EACb,IAAI,EACJ,IAAI,EACJ,QAAQ,EACR,QAAQ,EACR,KAAK,EACL,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,QAAQ;AACR,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,OAAO,MAAM,0BAA0B,CAAA;AAG9C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,MAAM,EAAE,MAAM,iBAAiB,CAAA;AACxC,OAAO,EAAE,OAAO,EAAE,MAAM,2BAA2B,CAAA;AAMnD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;IACD,KAAK,EAAE;QACL,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,MAAM,EAAE;QACN,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,aAAa,CAAC,EACrB,YAAY,EACZ,SAAS,GAIV;;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,YAAY,CAAC,IAAI,KAAK,oBAAoB,CAAC,CAAC,CAAC,CAClD,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,OAAO;;QAC3B,kCAAO,SAAS,CAAQ;;QAAgB,GAAG;QACpD,kCAAO,YAAY,CAAC,IAAI,CAAQ;;QAAiB,GAAG;QACpD,kCAAO,MAAA,YAAY,CAAC,UAAU,0CAAE,IAAI,CAAQ;gFAEjC,CACd,CAAC,CAAC,CAAC,CACF,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,OAAO;;QACtB,kCAAO,YAAY,CAAC,IAAI,CAAQ;;QAAyB,GAAG;QAC1E,kCAAO,SAAS,CAAQ;gFAEb,CACd,CAAA;AACH,CAAC;AAED;;;;;;;GAOG;AACH,SAAS,kBAAkB,CACzB,YAAkE;IAElE,IAAI,eAAe,GAAG,EAAE,CAAA;IACxB,8DAA8D;IAC9D,MAAM,KAAK,GAAQ,EAAE,CAAA;IACrB,YAAY,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE;;QAC7B,IAAI,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,EAAE;YACrC,IAAI,eAAe,MAAK,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CAAA,EAAE;gBACzD,eAAe,GAAG,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CAAA;gBACnD,KAAK,CAAC,IAAI,CACR,oBAAC,aAAa,IACZ,GAAG,EAAE,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,EACtC,KAAK,EAAE,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,IAEvC,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CACpB,CACjB,CAAA;aACF;YACD,KAAK,CAAC,IAAI,CACR,oBAAC,QAAQ,IAAC,GAAG,EAAE,OAAO,CAAC,IAAI,EAAE,KAAK,EAAE,OAAO,CAAC,IAAI,IAC7C,CAAA,MAAA,OAAO,CAAC,eAAe,0CAAE,WAAW;gBACnC,CAAC,CAAC,MAAA,OAAO,CAAC,eAAe,0CAAE,WAAW;gBACtC,CAAC,CAAC,OAAO,CAAC,IAAI,CACP,CACZ,CAAA;SACF;IACH,CAAC,CAAC,CAAA;IACF,OAAO,KAAK,CAAA;AACd,CAAC;AAED,SAAS,eAAe,CAAC,aAA4B;IACnD,OAAO,aAAa,CAAC,sBAAsB,CAAC,SAAS,CAGlD,CAAA;AACL,CAAC;AAED,SAAS,aAAa,CAAC,aAA4B;IACjD,OAAO,aAAa,CAAC,sBAAsB,CAAC,OAAO,CAAuB,CAAA;AAC5E,CAAC;AAED,MAAM,kBAAkB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA4B,EAAE,EAAE;IAC1E,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACxC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACxC,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;IAC5D,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACvD,MAAM,QAAQ,GAAG;QACf;YACE,KAAK,EAAE,qBAAqB;YAC5B,MAAM,EAAE,UAAU;SACnB;QACD;YACE,KAAK,EAAE,0BAA0B;YACjC,MAAM,EAAE,OAAO;SAChB;KACF,CAAA;IACD,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,mBAAmB,CAAC,EAAE,UAAU,EAAE,OAAO,EAAE,CAAC,CAAA;IACpD,CAAC,EAAE,CAAC,KAAK,EAAE,UAAU,EAAE,OAAO,CAAC,CAAC,CAAA;IAEhC,OAAO,CACL,oBAAC,KAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,oBAAC,UAAU,iCAAoC;QAC9C,QAAQ,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,KAAK,EAAE,EAAE,CAAC,CAChC,oBAAC,IAAI,IAAC,MAAM,QAAC,GAAG,EAAE,OAAO,CAAC,KAAK,EAAE,SAAS,EAAE,OAAO,CAAC,IAAI;YACtD,oBAAC,WAAW;gBACV,oBAAC,UAAU,QAAE,OAAO,CAAC,KAAK,CAAc;gBACxC,oBAAC,IAAI,IAAC,cAAc;oBACjB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,GAAW,EAAE,GAAW,EAAE,EAAE,CAAC,CAChD,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,cAAc;wBAChC,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,UAAU,EAAE;gCACV,YAAY,EAAE,CACZ,oBAAC,cAAc,IAAC,QAAQ,EAAC,KAAK;oCAC5B,oBAAC,UAAU,IACT,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;4CACZ,MAAM,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;gDAC7C,OAAO,CAAC,KAAK,GAAG,CAAA;4CAClB,CAAC,CAAC,CAAA;4CACF,KAAK,KAAK,CAAC;gDACT,CAAC,CAAC,aAAa,CAAC,OAAO,CAAC;gDACxB,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;wCACzB,CAAC;wCAED,oBAAC,UAAU,OAAG,CACH,CACE,CAClB;6BACF,GACD,CACO,CACZ,CAAC;oBACF,oBAAC,QAAQ,IAAC,cAAc;wBACtB,oBAAC,SAAS,IACR,KAAK,EAAE,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,EACpC,WAAW,EAAC,SAAS,EACrB,QAAQ,EAAE,KAAK,CAAC,EAAE;gCAChB,KAAK,KAAK,CAAC;oCACT,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC;oCAC/B,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;4BACnC,CAAC,EACD,UAAU,EAAE;gCACV,YAAY,EAAE,CACZ,oBAAC,cAAc,IAAC,QAAQ,EAAC,KAAK;oCAC5B,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;4CACZ,IAAI,KAAK,KAAK,CAAC,EAAE;gDACf,MAAM,OAAO,GAAa,UAAU,CAAA;gDACpC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;gDACpB,aAAa,CAAC,OAAO,CAAC,CAAA;gDACtB,SAAS,CAAC,EAAE,CAAC,CAAA;6CACd;iDAAM;gDACL,MAAM,OAAO,GAAa,OAAO,CAAA;gDACjC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;gDACpB,UAAU,CAAC,OAAO,CAAC,CAAA;gDACnB,SAAS,CAAC,EAAE,CAAC,CAAA;6CACd;wCACH,CAAC,EACD,QAAQ,EAAE,KAAK,KAAK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+
{"version":3,"file":"ConfirmTrack.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/ConfirmTrack.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EACL,IAAI,EACJ,WAAW,EACX,QAAQ,EACR,WAAW,EACX,gBAAgB,EAChB,UAAU,EACV,UAAU,EACV,cAAc,EACd,aAAa,EACb,IAAI,EACJ,IAAI,EACJ,QAAQ,EACR,QAAQ,EACR,KAAK,EACL,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EACL,yBAAyB,EACzB,UAAU,EACV,MAAM,EACN,UAAU,GACX,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,2BAA2B,CAAA;AAGnD,QAAQ;AACR,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,OAAO,MAAM,0BAA0B,CAAA;AAI9C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;IACD,KAAK,EAAE;QACL,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,MAAM,EAAE;QACN,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,aAAa,CAAC,EACrB,YAAY,EACZ,SAAS,GAIV;;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,YAAY,CAAC,IAAI,KAAK,oBAAoB,CAAC,CAAC,CAAC,CAClD,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,OAAO;;QAC3B,kCAAO,SAAS,CAAQ;;QAAgB,GAAG;QACpD,kCAAO,YAAY,CAAC,IAAI,CAAQ;;QAAiB,GAAG;QACpD,kCAAO,MAAA,YAAY,CAAC,UAAU,0CAAE,IAAI,CAAQ;gFAEjC,CACd,CAAC,CAAC,CAAC,CACF,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,OAAO;;QACtB,kCAAO,YAAY,CAAC,IAAI,CAAQ;;QAAyB,GAAG;QAC1E,kCAAO,SAAS,CAAQ;gFAEb,CACd,CAAA;AACH,CAAC;AAED;;;;;;;GAOG;AACH,SAAS,kBAAkB,CACzB,YAAkE;IAElE,IAAI,eAAe,GAAG,EAAE,CAAA;IACxB,8DAA8D;IAC9D,MAAM,KAAK,GAAQ,EAAE,CAAA;IACrB,YAAY,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE;;QAC7B,IAAI,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,EAAE;YACrC,IAAI,eAAe,MAAK,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CAAA,EAAE;gBACzD,eAAe,GAAG,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CAAA;gBACnD,KAAK,CAAC,IAAI,CACR,oBAAC,aAAa,IACZ,GAAG,EAAE,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,EACtC,KAAK,EAAE,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,IAEvC,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CACpB,CACjB,CAAA;aACF;YACD,KAAK,CAAC,IAAI,CACR,oBAAC,QAAQ,IAAC,GAAG,EAAE,OAAO,CAAC,IAAI,EAAE,KAAK,EAAE,OAAO,CAAC,IAAI,IAC7C,CAAA,MAAA,OAAO,CAAC,eAAe,0CAAE,WAAW;gBACnC,CAAC,CAAC,MAAA,OAAO,CAAC,eAAe,0CAAE,WAAW;gBACtC,CAAC,CAAC,OAAO,CAAC,IAAI,CACP,CACZ,CAAA;SACF;IACH,CAAC,CAAC,CAAA;IACF,OAAO,KAAK,CAAA;AACd,CAAC;AAED,SAAS,eAAe,CAAC,aAA4B;IACnD,OAAO,aAAa,CAAC,sBAAsB,CAAC,SAAS,CAGlD,CAAA;AACL,CAAC;AAED,SAAS,aAAa,CAAC,aAA4B;IACjD,OAAO,aAAa,CAAC,sBAAsB,CAAC,OAAO,CAAuB,CAAA;AAC5E,CAAC;AAED,MAAM,kBAAkB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA4B,EAAE,EAAE;IAC1E,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACxC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACxC,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;IAC5D,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACvD,MAAM,QAAQ,GAAG;QACf;YACE,KAAK,EAAE,qBAAqB;YAC5B,MAAM,EAAE,UAAU;SACnB;QACD;YACE,KAAK,EAAE,0BAA0B;YACjC,MAAM,EAAE,OAAO;SAChB;KACF,CAAA;IACD,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,mBAAmB,CAAC,EAAE,UAAU,EAAE,OAAO,EAAE,CAAC,CAAA;IACpD,CAAC,EAAE,CAAC,KAAK,EAAE,UAAU,EAAE,OAAO,CAAC,CAAC,CAAA;IAEhC,OAAO,CACL,oBAAC,KAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,oBAAC,UAAU,iCAAoC;QAC9C,QAAQ,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,KAAK,EAAE,EAAE,CAAC,CAChC,oBAAC,IAAI,IAAC,MAAM,QAAC,GAAG,EAAE,OAAO,CAAC,KAAK,EAAE,SAAS,EAAE,OAAO,CAAC,IAAI;YACtD,oBAAC,WAAW;gBACV,oBAAC,UAAU,QAAE,OAAO,CAAC,KAAK,CAAc;gBACxC,oBAAC,IAAI,IAAC,cAAc;oBACjB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,GAAW,EAAE,GAAW,EAAE,EAAE,CAAC,CAChD,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,cAAc;wBAChC,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,UAAU,EAAE;gCACV,YAAY,EAAE,CACZ,oBAAC,cAAc,IAAC,QAAQ,EAAC,KAAK;oCAC5B,oBAAC,UAAU,IACT,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;4CACZ,MAAM,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;gDAC7C,OAAO,CAAC,KAAK,GAAG,CAAA;4CAClB,CAAC,CAAC,CAAA;4CACF,KAAK,KAAK,CAAC;gDACT,CAAC,CAAC,aAAa,CAAC,OAAO,CAAC;gDACxB,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;wCACzB,CAAC;wCAED,oBAAC,UAAU,OAAG,CACH,CACE,CAClB;6BACF,GACD,CACO,CACZ,CAAC;oBACF,oBAAC,QAAQ,IAAC,cAAc;wBACtB,oBAAC,SAAS,IACR,KAAK,EAAE,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,EACpC,WAAW,EAAC,SAAS,EACrB,QAAQ,EAAE,KAAK,CAAC,EAAE;gCAChB,KAAK,KAAK,CAAC;oCACT,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC;oCAC/B,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;4BACnC,CAAC,EACD,UAAU,EAAE;gCACV,YAAY,EAAE,CACZ,oBAAC,cAAc,IAAC,QAAQ,EAAC,KAAK;oCAC5B,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;4CACZ,IAAI,KAAK,KAAK,CAAC,EAAE;gDACf,MAAM,OAAO,GAAa,UAAU,CAAA;gDACpC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;gDACpB,aAAa,CAAC,OAAO,CAAC,CAAA;gDACtB,SAAS,CAAC,EAAE,CAAC,CAAA;6CACd;iDAAM;gDACL,MAAM,OAAO,GAAa,OAAO,CAAA;gDACjC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;gDACpB,UAAU,CAAC,OAAO,CAAC,CAAA;gDACnB,SAAS,CAAC,EAAE,CAAC,CAAA;6CACd;wCACH,CAAC,EACD,QAAQ,EAAE,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,KAAK,EA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@@ -1,10 +1,10 @@
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1
1
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import React, { useState } from 'react';
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2
2
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import { Alert, Button, Step, StepContent, StepLabel, Stepper, Typography, } from '@mui/material';
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3
3
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import { makeStyles } from 'tss-react/mui';
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4
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+
import { getRoot } from 'mobx-state-tree';
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4
5
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import { getSession, isElectron, supportedIndexingAdapters, } from '@jbrowse/core/util';
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5
6
|
import { getConf } from '@jbrowse/core/configuration';
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6
7
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import { observer } from 'mobx-react';
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7
|
-
import { getEnv } from 'mobx-state-tree';
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8
8
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// locals
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9
9
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import ConfirmTrack from './ConfirmTrack';
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10
10
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import TrackSourceSelect from './TrackSourceSelect';
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@@ -33,9 +33,8 @@ const steps = ['Enter track data', 'Confirm track type'];
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33
33
|
function AddTrackWorkflow({ model }) {
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34
34
|
const [activeStep, setActiveStep] = useState(0);
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35
35
|
const { classes } = useStyles();
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|
36
|
-
|
|
37
|
-
const {
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|
38
|
-
const { jobsManager } = rootModel;
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36
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+
// eslint-disable-next-line @typescript-eslint/no-explicit-any
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|
37
|
+
const { jobsManager } = getRoot(model);
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|
39
38
|
const session = getSession(model);
|
|
40
39
|
const { assembly, trackAdapter, trackData, trackName, trackType, textIndexTrack, textIndexingConf, } = model;
|
|
41
40
|
const [trackErrorMessage, setTrackErrorMessage] = useState();
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@@ -1 +1 @@
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1
|
-
{"version":3,"file":"DefaultAddTrackWorkflow.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,KAAK,EACL,MAAM,EACN,IAAI,EACJ,WAAW,EACX,SAAS,EACT,OAAO,EACP,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;
|
|
1
|
+
{"version":3,"file":"DefaultAddTrackWorkflow.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,KAAK,EACL,MAAM,EACN,IAAI,EACJ,WAAW,EACX,SAAS,EACT,OAAO,EACP,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAEzC,OAAO,EACL,UAAU,EACV,UAAU,EACV,yBAAyB,GAC1B,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,SAAS;AACT,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AAInD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;IACD,OAAO,EAAE;QACP,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;KAClD;IACD,MAAM,EAAE;QACN,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC3B,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC9B;IACD,gBAAgB,EAAE;QAChB,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;IACD,WAAW,EAAE;QACX,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,UAAU,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,QAAQ;KAC/D;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,KAAK,GAAG,CAAC,kBAAkB,EAAE,oBAAoB,CAAC,CAAA;AAExD,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAA4B;IAC3D,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,8DAA8D;IAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,OAAO,CAAM,KAAK,CAAC,CAAA;IAC3C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EACJ,QAAQ,EACR,YAAY,EACZ,SAAS,EACT,SAAS,EACT,SAAS,EACT,cAAc,EACd,gBAAgB,GACjB,GAAG,KAAK,CAAA;IACT,MAAM,CAAC,iBAAiB,EAAE,oBAAoB,CAAC,GAAG,QAAQ,EAAU,CAAA;IAEpE,SAAS,cAAc,CAAC,IAAY;QAClC,QAAQ,IAAI,EAAE;YACZ,KAAK,CAAC;gBACJ,OAAO,oBAAC,iBAAiB,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;YAC5C,KAAK,CAAC;gBACJ,OAAO,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;YACvC;gBACE,OAAO,oBAAC,UAAU,uBAA0B,CAAA;SAC/C;IACH,CAAC;IAED,KAAK,UAAU,UAAU;QACvB,IAAI,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE;YACnC,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;YAC7B,OAAM;SACP;QAED,MAAM,OAAO,GAAG;YACd,GAAG,SAAS,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE;YAC7D,GAAG,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,eAAe,EAAE;SAC9C,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;QAEV,MAAM,gBAAgB,GAAG,OAAO,CAAC,eAAe,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAA;QAE9D,IAAI,YAAY,IAAI,YAAY,CAAC,IAAI,KAAK,SAAS,EAAE;YACnD,OAAO,CAAC,YAAY,CAAC;gBACnB,OAAO;gBACP,IAAI,EAAE,SAAS;gBACf,IAAI,EAAE,SAAS;gBACf,aAAa,EAAE,CAAC,QAAQ,CAAC;gBACzB,OAAO,EAAE;oBACP,GAAG,YAAY;oBACf,eAAe,EAAE,OAAO,CAAC,gBAAgB,EAAE,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;iBACpE;aACF,CAAC,CAAA;YACF,IAAI,KAAK,CAAC,IAAI,EAAE;gBACd,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;gBAC7B,IACE,UAAU;oBACV,cAAc;oBACd,yBAAyB,CAAC,YAAY,CAAC,IAAI,CAAC,EAC5C;oBACA,MAAM,IAAI,GAAG,gBAAgB,IAAI;wBAC/B,UAAU,EAAE,CAAC,MAAM,EAAE,IAAI,CAAC;wBAC1B,OAAO,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC;qBACzB,CAAA;oBACD,MAAM,SAAS,GAAG,SAAS,GAAG,QAAQ,CAAA;oBACtC,MAAM,QAAQ,GAAG;wBACf,cAAc,EAAE;4BACd,GAAG,IAAI;4BACP,UAAU,EAAE,CAAC,QAAQ,CAAC;4BACtB,MAAM,EAAE,CAAC,OAAO,CAAC;4BACjB,SAAS,EAAE,UAAU;4BACrB,IAAI,EAAE,SAAS;4BACf,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;yBACpC;wBACD,IAAI,EAAE,SAAS;wBACf,cAAc,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,QAAQ,EAAE;qBAC7C,CAAA;oBACD,WAAW,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAA;iBAC/B;aACF;iBAAM;gBACL,OAAO,CAAC,MAAM,CACZ,oFAAoF,EACpF,MAAM,CACP,CAAA;aACF;YACD,KAAK,CAAC,SAAS,EAAE,CAAA;YACjB,OAAO,CAAC,UAAU,CAAC,KAAK,CAAC,CAAA;SAC1B;aAAM;YACL,oBAAoB,CAClB,kFAAkF,CACnF,CAAA;SACF;IACH,CAAC;IAED,SAAS,UAAU;QACjB,oBAAoB,CAAC,SAAS,CAAC,CAAA;QAC/B,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;IAC/B,CAAC;IAED,SAAS,cAAc;QACrB,QAAQ,UAAU,EAAE;YAClB,KAAK,CAAC;gBACJ,OAAO,CAAC,SAAS,CAAA;YACnB,KAAK,CAAC;gBACJ,OAAO,CAAC,CAAC,SAAS,IAAI,SAAS,KAAI,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAE,IAAI,CAAA,IAAI,QAAQ,CAAC,CAAA;YACpE;gBACE,OAAO,IAAI,CAAA;SACd;IACH,CAAC;IAED,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,oBAAC,OAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,UAAU,EAAE,UAAU,EACtB,WAAW,EAAC,UAAU,IAErB,KAAK,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,CAAC,CACzB,oBAAC,IAAI,IAAC,GAAG,EAAE,KAAK;YACd,oBAAC,SAAS,QAAE,KAAK,CAAa;YAC9B,oBAAC,WAAW;gBACT,cAAc,CAAC,GAAG,CAAC;gBACpB,6BAAK,SAAS,EAAE,OAAO,CAAC,gBAAgB;oBACtC,oBAAC,MAAM,IACL,QAAQ,EAAE,UAAU,KAAK,CAAC,EAC1B,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,WAGlB;oBACT,oBAAC,MAAM,IACL,QAAQ,EAAE,cAAc,EAAE,EAC1B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,iBACb,oBAAoB,IAE/B,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAC1C,CACL;gBACL,iBAAiB,CAAC,CAAC,CAAC,CACnB,6BAAK,SAAS,EAAE,OAAO,CAAC,cAAc;oBACpC,oBAAC,KAAK,IAAC,QAAQ,EAAC,OAAO,IAAE,iBAAiB,CAAS,CAC/C,CACP,CAAC,CAAC,CAAC,IAAI,CACI,CACT,CACR,CAAC,CACM,CACN,CACP,CAAA;AACH,CAAC;AACD,eAAe,QAAQ,CAAC,gBAAgB,CAAC,CAAA"}
|
|
@@ -1,17 +1,15 @@
|
|
|
1
1
|
import React, { Suspense, lazy, useState } from 'react';
|
|
2
|
-
import { makeStyles } from 'tss-react/mui';
|
|
3
2
|
import { Badge, IconButton, InputAdornment, TextField } from '@mui/material';
|
|
3
|
+
import { makeStyles } from 'tss-react/mui';
|
|
4
|
+
import { observer } from 'mobx-react';
|
|
5
|
+
import JBrowseMenu from '@jbrowse/core/ui/Menu';
|
|
6
|
+
import { getSession, getEnv, isSessionModelWithWidgets, isSessionModelWithConnections, isSessionWithAddTracks, } from '@jbrowse/core/util';
|
|
7
|
+
import { readConfObject, } from '@jbrowse/core/configuration';
|
|
4
8
|
// icons
|
|
5
9
|
import ClearIcon from '@mui/icons-material/Clear';
|
|
6
10
|
import MenuIcon from '@mui/icons-material/Menu';
|
|
7
11
|
import ShoppingCartIcon from '@mui/icons-material/ShoppingCart';
|
|
8
12
|
import { Cable } from '@jbrowse/core/ui/Icons';
|
|
9
|
-
// other
|
|
10
|
-
import JBrowseMenu from '@jbrowse/core/ui/Menu';
|
|
11
|
-
import { getSession, isSessionModelWithWidgets, isSessionModelWithConnections, isSessionWithAddTracks, } from '@jbrowse/core/util';
|
|
12
|
-
import { readConfObject, } from '@jbrowse/core/configuration';
|
|
13
|
-
import { observer } from 'mobx-react';
|
|
14
|
-
import { getEnv } from 'mobx-state-tree';
|
|
15
13
|
// lazy components
|
|
16
14
|
const CloseConnectionDialog = lazy(() => import('./CloseConnectionDialog'));
|
|
17
15
|
const DeleteConnectionDialog = lazy(() => import('./DeleteConnectionDialog'));
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvD,OAAO,EAAE,
|
|
1
|
+
{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvD,OAAO,EAAE,KAAK,EAAE,UAAU,EAAE,cAAc,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AAC5E,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,WAAyB,MAAM,uBAAuB,CAAA;AAC7D,OAAO,EACL,UAAU,EACV,MAAM,EACN,yBAAyB,EACzB,6BAA6B,EAC7B,sBAAsB,GACvB,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAEpC,QAAQ;AACR,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,QAAQ,MAAM,0BAA0B,CAAA;AAC/C,OAAO,gBAAgB,MAAM,kCAAkC,CAAA;AAC/D,OAAO,EAAE,KAAK,EAAE,MAAM,wBAAwB,CAAA;AAK9C,kBAAkB;AAClB,MAAM,qBAAqB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,yBAAyB,CAAC,CAAC,CAAA;AAC3E,MAAM,sBAAsB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,0BAA0B,CAAC,CAAC,CAAA;AAC7E,MAAM,uBAAuB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAC/E,MAAM,uBAAuB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAE/E,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,SAAS,EAAE;QACT,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,QAAQ,EAAE;QACR,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC7B,YAAY,EAAE,CAAC;KAChB;CACF,CAAC,CAAC,CAAA;AAcH,SAAS,+BAA+B,CAAC,EACvC,KAAK,EACL,eAAe,EACf,cAAc,EACd,WAAW,GAMZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,EAAqB,CAAA;IACrE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,EAAqB,CAAA;IACnE,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAqB,CAAA;IACzD,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,EAAa,CAAA;IACvD,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,QAAQ,EAAiB,CAAA;IACzE,MAAM,CAAC,qBAAqB,EAAE,wBAAwB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACzE,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE/B,SAAS,eAAe,CACtB,cAAqC,EACrC,kBAA4B;QAE5B,MAAM,IAAI,GAAG,cAAc,CAAC,cAAc,EAAE,MAAM,CAAC,CAAA;QAEnD,aAAa;QACb,MAAM,MAAM,GAAG,OAAO,CAAC,wBAAwB,CAAC,cAAc,CAAC,CAAA;QAC/D,IAAI,MAAM,EAAE;YACV,MAAM,CAAC,qBAAqB,EAAE,oBAAoB,CAAC,GAAG,MAAM,CAAA;YAC5D,IAAI,MAAM,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC,MAAM,GAAG,CAAC,EAAE;gBAChD,YAAY,CAAC;oBACX,cAAc;oBACd,qBAAqB;oBACrB,oBAAoB;oBACpB,IAAI;iBACL,CAAC,CAAA;aACH;iBAAM;gBACL,qBAAqB,EAAE,CAAA;aACxB;SACF;QACD,IAAI,kBAAkB,EAAE;YACtB,mBAAmB,CAAC,EAAE,IAAI,EAAE,cAAc,EAAE,CAAC,CAAA;SAC9C;IACH,CAAC;IAED,MAAM,mBAAmB,GAAG;QAC1B;YACE,KAAK,EAAE,4BAA4B;YACnC,OAAO,EAAE,GAAG,EAAE,CAAC,uBAAuB,CAAC,IAAI,CAAC;SAC7C;KACF,CAAA;IAED,IAAI,6BAA6B,CAAC,OAAO,CAAC,EAAE;QAC1C,mBAAmB,CAAC,OAAO,CAAC;YAC1B,KAAK,EAAE,gBAAgB;YACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,IAAI,yBAAyB,CAAC,OAAO,CAAC,EAAE;oBACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,qBAAqB,EAAE,qBAAqB,CAAC,CAChE,CAAA;iBACF;YACH,CAAC;SACF,CAAC,CAAA;QAEF,mBAAmB,CAAC,IAAI,CAAC;YACvB,KAAK,EAAE,uBAAuB;YAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,wBAAwB,CAAC,IAAI,CAAC;SAC9C,CAAC,CAAA;KACH;IAED,MAAM,iBAAiB,GACrB,aAAa,CAAC,MAAM,GAAG,CAAC;QACtB,CAAC,CAAC;YACE;gBACE,KAAK,EAAE,oBAAoB;gBAC3B,OAAO,EAAE,aAAa,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC;oBACzC,KAAK,EAAE,IAAI;oBACX,OAAO,EAAE,GAAG,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC;iBACnC,CAAC,CAAC;aACJ;SACF;QACH,CAAC,CAAC,EAAE,CAAA;IAER,MAAM,SAAS,GAAG;QAChB;YACE,KAAK,EAAE,cAAc;YACrB,OAAO,EAAE,GAAG,EAAE;gBACZ,IAAI,yBAAyB,CAAC,OAAO,CAAC,EAAE;oBACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,gBAAgB,EAAE,gBAAgB,EAAE;wBACpD,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,EAAE;qBACpB,CAAC,CACH,CAAA;iBACF;YACH,CAAC;SACF;QAED,GAAG,iBAAiB;KACrB,CAAA;IAED,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,aAAa,CAAC,sBAAsB,CAC9D,mCAAmC,EACnC,EAAE,EACF,EAAE,OAAO,EAAE,CACE,CAAA;IACf,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,CAAC,EAAE,CAAC,eAAe,CAAC,CAAA,GAAG,aAAH,GAAG,uBAAH,GAAG,CAAE,qBAAqB,GAAG,MAAM,KAAI,CAAC,CAAC,iBACzD,6BAA6B;QAEzC,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;YAC5B,sBAAsB,CAAC,OAAO,CAAC,IAAI,CAClC,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,aAAa,CAAC;gBAEhD,oBAAC,QAAQ,OAAG,CACD,CACd;YAEA,OAAO,CAAC,cAAc,IAAI,CACzB,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,eAAe,CAAC,KAAK,CAAC,aAAa,CAAC;gBAEtD,oBAAC,KAAK,OAAG,CACE,CACd;YAEA,KAAK,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,CACxB,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,cAAc,CAAC,KAAK,CAAC,aAAa,CAAC;gBAErD,oBAAC,KAAK,IAAC,YAAY,EAAE,KAAK,CAAC,SAAS,CAAC,MAAM,EAAE,KAAK,EAAC,SAAS;oBAC1D,oBAAC,gBAAgB,OAAG,CACd,CACG,CACd,CAAC,CAAC,CAAC,IAAI;YAER,oBAAC,SAAS,IACR,SAAS,EAAE,OAAO,CAAC,SAAS,EAC5B,KAAK,EAAC,eAAe,EACrB,KAAK,EAAE,KAAK,CAAC,UAAU,EACvB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC1D,SAAS,QACT,UAAU,EAAE;oBACV,YAAY,EAAE,CACZ,oBAAC,cAAc,IAAC,QAAQ,EAAC,KAAK;wBAC5B,oBAAC,UAAU,IAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAE,KAAK,CAAC,eAAe;4BAC1D,oBAAC,SAAS,OAAG,CACF,CACE,CAClB;iBACF,GACD,CACE;QACN,oBAAC,WAAW,IACV,QAAQ,EAAE,YAAY,EACtB,IAAI,EAAE,OAAO,CAAC,YAAY,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE;gBAC/B,QAAQ,EAAE,CAAA;gBAC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@@ -1,24 +1,17 @@
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1
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-
import { types,
|
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1
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+
import { types, getSnapshot } from 'mobx-state-tree';
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2
2
|
import { getConf, readConfObject, } from '@jbrowse/core/configuration';
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3
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-
import { getSession } from '@jbrowse/core/util';
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3
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+
import { getSession, getEnv } from '@jbrowse/core/util';
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4
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+
import { getTrackName } from '@jbrowse/core/util/tracks';
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4
5
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import { ElementId } from '@jbrowse/core/util/types/mst';
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5
6
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function hasAnyOverlap(a1 = [], a2 = []) {
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6
7
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return !!a1.find(value => a2.includes(value));
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7
8
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}
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8
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-
function passesFilter(filter, config) {
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9
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+
function passesFilter(filter, config, session) {
|
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9
10
|
const categories = readConfObject(config, 'category');
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10
11
|
const filterLower = filter.toLowerCase();
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11
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-
return (getTrackName(config).toLowerCase().includes(filterLower) ||
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12
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+
return (getTrackName(config, session).toLowerCase().includes(filterLower) ||
|
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12
13
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!!(categories === null || categories === void 0 ? void 0 : categories.filter(c => c.toLowerCase().includes(filterLower)).length));
|
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13
14
|
}
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14
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-
function getTrackName(config) {
|
|
15
|
-
if (!config.trackId) {
|
|
16
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-
throw new Error('not a track');
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17
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-
}
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18
|
-
return (readConfObject(config, 'name') ||
|
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19
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-
`Reference sequence (${readConfObject(getParent(config), 'displayName') ||
|
|
20
|
-
readConfObject(getParent(config), 'name')})`);
|
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21
|
-
}
|
|
22
15
|
function filterTracks(tracks, self, assemblyName) {
|
|
23
16
|
const { assemblyManager } = getSession(self);
|
|
24
17
|
const { pluginManager } = getEnv(self);
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@@ -39,8 +32,9 @@ function filterTracks(tracks, self, assemblyName) {
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|
|
39
32
|
export function generateHierarchy(model, trackConfigurations, collapsed) {
|
|
40
33
|
const hierarchy = { children: [] };
|
|
41
34
|
const { filterText, view } = model;
|
|
35
|
+
const session = getSession(model);
|
|
42
36
|
trackConfigurations
|
|
43
|
-
.filter(conf => passesFilter(filterText, conf))
|
|
37
|
+
.filter(conf => passesFilter(filterText, conf, session))
|
|
44
38
|
.forEach(conf => {
|
|
45
39
|
// copy the categories since this array can be mutated downstream
|
|
46
40
|
const categories = [...(readConfObject(conf, 'category') || [])];
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@@ -74,7 +68,7 @@ export function generateHierarchy(model, trackConfigurations, collapsed) {
|
|
|
74
68
|
// using splice here tries to group leaf nodes above hierarchical nodes
|
|
75
69
|
currLevel.children.splice(currLevel.children.findIndex(elt => elt.children.length), 0, {
|
|
76
70
|
id: conf.trackId,
|
|
77
|
-
name: getTrackName(conf),
|
|
71
|
+
name: getTrackName(conf, session),
|
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78
72
|
conf,
|
|
79
73
|
checked: !!tracks.find(f => f.configuration === conf),
|
|
80
74
|
children: [],
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,
|
|
1
|
+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,WAAW,EAAY,MAAM,iBAAiB,CAAA;AAC9D,OAAO,EACL,OAAO,EACP,cAAc,GAEf,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAwB,UAAU,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAA;AAC7E,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAA;AACxD,OAAO,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAGxD,SAAS,aAAa,CAAI,KAAU,EAAE,EAAE,KAAU,EAAE;IAClD,OAAO,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,SAAS,YAAY,CACnB,MAAc,EACd,MAA6B,EAC7B,OAA6B;IAE7B,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAyB,CAAA;IAC7E,MAAM,WAAW,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;IACxC,OAAO,CACL,YAAY,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;QACjE,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,EAAE,MAAM,CAAA,CACxE,CAAA;AACH,CAAC;AAWD,SAAS,YAAY,CACnB,MAA+B,EAC/B,IAAgC,EAChC,YAAoB;IAEpB,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;IAC5C,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IACtC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAElD,IAAI,CAAC,QAAQ,EAAE;QACb,OAAO,EAAE,CAAA;KACV;IACD,MAAM,EAAE,UAAU,EAAE,GAAG,QAAQ,CAAA;IAC/B,OAAO,MAAM;SACV,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,aAAa,CAAC,UAAU,EAAE,cAAc,CAAC,CAAC,EAAE,eAAe,CAAC,CAAC,CAAC;SAC1E,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,EAAE,YAAY,EAAE,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClE,MAAM,cAAc,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACxE,MAAM,aAAa,GAAG,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACrE,OAAO,aAAa,CAAC,cAAc,EAAE,aAAa,CAAC,CAAA;IACrD,CAAC,CAAC,CAAA;AACN,CAAC;AAED,MAAM,UAAU,iBAAiB,CAC/B,KAAqC,EACrC,mBAA4C,EAC5C,SAAwD;IAExD,MAAM,SAAS,GAAG,EAAE,QAAQ,EAAE,EAAgB,EAAc,CAAA;IAC5D,MAAM,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAClC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IAEjC,mBAAmB;SAChB,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE,IAAI,EAAE,OAAO,CAAC,CAAC;SACvD,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,iEAAiE;QACjE,MAAM,UAAU,GAAG,CAAC,GAAG,CAAC,cAAc,CAAC,IAAI,EAAE,UAAU,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;QAEhE,uEAAuE;QACvE,kEAAkE;QAClE,0BAA0B;QAC1B,IAAI,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAE;YACzC,UAAU,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;SACtC;QAED,IAAI,SAAS,GAAG,SAAS,CAAA;QAEzB,wDAAwD;QACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC1C,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YAC9B,MAAM,GAAG,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAA;YAC7D,MAAM,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;YAC/C,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,CAAC,GAAG;oBACR,QAAQ,EAAE,EAAE;oBACZ,IAAI,EAAE,QAAQ;oBACd,EAAE;oBACF,eAAe,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC;iBACpC,CAAA;gBACD,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBAC1B,SAAS,GAAG,CAAC,CAAA;aACd;iBAAM;gBACL,SAAS,GAAG,GAAG,CAAA;aAChB;SACF;QACD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAoD,CAAA;QAExE,uEAAuE;QACvE,SAAS,CAAC,QAAQ,CAAC,MAAM,CACvB,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,EACxD,CAAC,EACD;YACE,EAAE,EAAE,IAAI,CAAC,OAAO;YAChB,IAAI,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC;YACjC,IAAI;YACJ,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,KAAK,IAAI,CAAC;YACrD,QAAQ,EAAE,EAAE;SACb,CACF,CAAA;IACH,CAAC,CAAC,CAAA;IAEJ,OAAO,SAAS,CAAC,QAAQ,CAAA;AAC3B,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,gBAAgB,CAAC,aAA4B;IACnE,OAAO,KAAK;SACT,KAAK,CAAC,iCAAiC,EAAE;QACxC,EAAE,EAAE,SAAS;QACb,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,iCAAiC,CAAC;QACtD,SAAS,EAAE,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC;QACnC,UAAU,EAAE,EAAE;QACd,IAAI,EAAE,KAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;KACF,CAAC;SACD,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,EAA6B;KACzC,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,cAAc,CAAC,GAA4B;YACzC,IAAI,CAAC,SAAS,GAAG,CAAC,GAAG,IAAI,CAAC,SAAS,EAAE,GAAG,GAAG,CAAC,CAAA;QAC9C,CAAC;QACD,mBAAmB,CAAC,GAA4B;YAC9C,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;QAC/D,CAAC;QACD,cAAc;YACZ,IAAI,CAAC,SAAS,GAAG,EAAE,CAAA;QACrB,CAAC;QACD,OAAO,CAAC,IAAa;YACnB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;QACD,cAAc,CAAC,QAAgB;YAC7B,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QAC7D,CAAC;QACD,eAAe;YACb,IAAI,CAAC,UAAU,GAAG,EAAE,CAAA;QACtB,CAAC;QACD,aAAa,CAAC,OAAe;YAC3B,IAAI,CAAC,UAAU,GAAG,OAAO,CAAA;QAC3B,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,kBAAkB,CAAC,YAAoB;YACrC,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAC5C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,MAAM,SAAS,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,aAAa,CAAC,QAAQ,CAAA;YAClD,MAAM,QAAQ,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;YAC1D,IAAI,CAAC,SAAS,EAAE;gBACd,OAAO,SAAS,CAAA;aACjB;YACD,KAAK,MAAM,OAAO,IAAI,SAAS,CAAC,QAAQ,EAAE;gBACxC,IAAI,QAAQ,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,OAAO,CAAC,IAAI,CAAC,EAAE;oBAC5D,OAAO,SAAS,CAAA;iBACjB;aACF;QACH,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,mBAAmB,CAAC,YAAoB;YACtC,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE;gBACd,OAAO,EAAE,CAAA;aACV;YACD,MAAM,EAAE,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YACpD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,IAAI,CAAC,QAAQ,EAAE;gBACb,OAAO,EAAE,CAAA;aACV;YACD,MAAM,MAAM,GAAG,IAAI,CAAC,kBAAkB,CAAC,YAAY,CAAC,CAAA;YACpD,qEAAqE;YACrE,sCAAsC;YACtC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,MAAM,CAAC;gBACrC,GAAG,YAAY,CAAC,MAAM,EAAE,IAAI,EAAE,YAAY,CAAC;aAC5C,CAAC,CAAA;QACJ,CAAC;QAED,IAAI,aAAa;;YACf,OAAO,CAAA,MAAA,IAAI,CAAC,IAAI,0CAAE,aAAa,KAAI,EAAE,CAAA;QACvC,CAAC;QAED,6BAA6B,CAC3B,YAAoB,EACpB,UAA+C;YAE/C,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE;gBACd,OAAO,EAAE,CAAA;aACV;YAED,+DAA+D;YAC/D,OAAO,YAAY,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,EAAE,YAAY,CAAC,CAAA;QAC5D,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,SAAS,CAAC,YAAoB;YAC5B,MAAM,IAAI,GAAG,iBAAiB;YAC5B,8DAA8D;YAC9D,IAAW,EACX,IAAI,CAAC,mBAAmB,CAAC,YAAY,CAAC,EACtC,IAAI,CAAC,SAAS,CACf,CAAA;YAED,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAChC,MAAM,EAAE,mBAAmB,EAAE,GAAG,OAAO,CAAA;YAEvC,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAC5C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,MAAM,KAAK,GACT,CAAC,QAAQ;iBACP,mBAAmB,aAAnB,mBAAmB,uBAAnB,mBAAmB,CACf,MAAM,CAAC,CAAC,CAAC,EAAE,CACX,aAAa,CAAC,QAAQ,CAAC,UAAU,EAAE,OAAO,CAAC,CAAC,EAAE,eAAe,CAAC,CAAC,EAEhE,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;oBACT,aAAa;oBACb,EAAE,EAAE,WAAW,CAAC,CAAC,CAAC,CAAC,aAAa;oBAChC,IAAI,EAAE,OAAO,CAAC,CAAC,EAAE,MAAM,CAAC;oBACxB,QAAQ,EAAE,IAAI,CAAC,mBAAmB,CAAC,YAAY,EAAE,CAAC,CAAC;oBACnD,KAAK,EAAE;wBACL,QAAQ,EAAE,IAAI;qBACf;iBACF,CAAC,CAAC,CAAA,CAAC;gBACR,EAAE,CAAA;YAEJ,OAAO;gBACL,IAAI,EAAE,MAAM;gBACZ,EAAE,EAAE,MAAM;gBACV,QAAQ,EAAE;oBACR,EAAE,IAAI,EAAE,QAAQ,EAAE,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,IAAI,EAAE;oBAChD,GAAG,KAAK;iBACT;aACF,CAAA;QACH,CAAC;QAED,mBAAmB,CACjB,YAAoB,EACpB,UAA+C;YAE/C,OAAO,iBAAiB;YACtB,8DAA8D;YAC9D,IAAW,EACX,IAAI,CAAC,6BAA6B,CAAC,YAAY,EAAE,UAAU,CAAC,EAC5D,IAAI,CAAC,SAAS,CACf,CAAA;QACH,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
import React, { useState } from 'react';
|
|
2
2
|
import { observer } from 'mobx-react';
|
|
3
|
-
import {
|
|
4
|
-
import { getSession } from '@jbrowse/core/util';
|
|
3
|
+
import { getParent } from 'mobx-state-tree';
|
|
4
|
+
import { getSession, getEnv } from '@jbrowse/core/util';
|
|
5
5
|
import { isSessionWithSessionPlugins, } from '@jbrowse/core/util/types';
|
|
6
6
|
import { Card, CardActions, CardContent, Button, Link, Typography, } from '@mui/material';
|
|
7
7
|
import { makeStyles } from 'tss-react/mui';
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"PluginCard.js","sourceRoot":"","sources":["../../../src/PluginStoreWidget/components/PluginCard.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;
|
|
1
|
+
{"version":3,"file":"PluginCard.js","sourceRoot":"","sources":["../../../src/PluginStoreWidget/components/PluginCard.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAA;AACvD,OAAO,EAEL,2BAA2B,GAC5B,MAAM,0BAA0B,CAAA;AACjC,OAAO,EACL,IAAI,EACJ,WAAW,EACX,WAAW,EACX,MAAM,EACN,IAAI,EACJ,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,QAAQ;AACR,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,OAAO,MAAM,yBAAyB,CAAA;AAC7C,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAGjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,IAAI,EAAE;QACJ,MAAM,EAAE,KAAK;KACd;IACD,IAAI,EAAE;QACJ,UAAU,EAAE,OAAO;QACnB,WAAW,EAAE,OAAO;KACrB;IACD,IAAI,EAAE;QACJ,UAAU,EAAE,GAAG;KAChB;IACD,SAAS,EAAE;QACT,OAAO,EAAE,MAAM;QACf,UAAU,EAAE,QAAQ;QACpB,MAAM,EAAE,WAAW;KACpB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,UAAU,CAAC,EAClB,MAAM,EACN,KAAK,EACL,SAAS,GAKV;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,WAAW,GAAG,OAAO,CACzB,aAAa,CAAC,wBAAwB,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,KAAK,MAAM,CAAC,GAAG,CAAC,CAC3E,CAAA;IACD,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvD,MAAM,aAAa,GAAG,WAAW,IAAI,YAAY,CAAA;IAEjD,8DAA8D;IAC9D,MAAM,SAAS,GAAG,SAAS,CAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC1C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,CAAA;IAE7B,OAAO,CACL,oBAAC,IAAI,IAAC,OAAO,EAAC,UAAU,EAAC,GAAG,EAAE,MAAM,CAAC,IAAI,EAAE,SAAS,EAAE,OAAO,CAAC,IAAI;QAChE,oBAAC,WAAW;YACV,6BAAK,SAAS,EAAE,OAAO,CAAC,SAAS;gBAC/B,oBAAC,UAAU,IAAC,OAAO,EAAC,IAAI;oBACtB,oBAAC,IAAI,IACH,IAAI,EAAE,GAAG,MAAM,CAAC,QAAQ,SAAS,EACjC,MAAM,EAAC,QAAQ,EACf,GAAG,EAAC,UAAU,IAEb,MAAM,CAAC,IAAI,CACP,CACI,CACT;YACN,6BAAK,SAAS,EAAE,OAAO,CAAC,SAAS;gBAC/B,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,WAAW,EAAE,OAAO,EAAE,GAAI;gBAC/C,oBAAC,UAAU,QAAE,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAc,CAChD;YACN,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,mBAA2B;YAC9D,oBAAC,UAAU,QAAE,MAAM,CAAC,WAAW,CAAc,CACjC;QACd,oBAAC,WAAW;YACV,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,aAAa,EACvB,SAAS,EAAE,WAAW,CAAC,CAAC,CAAC,oBAAC,SAAS,OAAG,CAAC,CAAC,CAAC,oBAAC,OAAO,OAAG,EACpD,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,SAAS,EAAE;wBACb,OAAO,CAAC,SAAS,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,IAAI,EAAE,GAAG,EAAE,MAAM,CAAC,GAAG,EAAE,CAAC,CAAA;qBAC1D;yBAAM,IAAI,2BAA2B,CAAC,OAAO,CAAC,EAAE;wBAC/C,OAAO,CAAC,gBAAgB,CAAC,MAAM,CAAC,CAAA;qBACjC;oBACD,eAAe,CAAC,IAAI,CAAC,CAAA;gBACvB,CAAC,IAEA,WAAW,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,SAAS,CAC/B,CACG,CACT,CACR,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,UAAU,CAAC,CAAA"}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-data-management",
|
|
3
|
-
"version": "2.1.
|
|
3
|
+
"version": "2.1.7",
|
|
4
4
|
"description": "JBrowse 2 linear genome view",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -61,5 +61,5 @@
|
|
|
61
61
|
"distModule": "esm/index.js",
|
|
62
62
|
"srcModule": "src/index.ts",
|
|
63
63
|
"module": "esm/index.js",
|
|
64
|
-
"gitHead": "
|
|
64
|
+
"gitHead": "a1344081f61e22e0f597517efa7386023eef9f33"
|
|
65
65
|
}
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import React, { useState } from 'react'
|
|
2
|
-
import { getSession } from '@jbrowse/core/util'
|
|
2
|
+
import { getSession, getEnv } from '@jbrowse/core/util'
|
|
3
3
|
import {
|
|
4
4
|
Button,
|
|
5
5
|
Step,
|
|
@@ -10,7 +10,6 @@ import {
|
|
|
10
10
|
} from '@mui/material'
|
|
11
11
|
import { makeStyles } from 'tss-react/mui'
|
|
12
12
|
import { observer } from 'mobx-react'
|
|
13
|
-
import { getEnv } from 'mobx-state-tree'
|
|
14
13
|
import { ConnectionType } from '@jbrowse/core/pluggableElementTypes'
|
|
15
14
|
|
|
16
15
|
// locals
|
|
@@ -51,9 +50,11 @@ function AddConnectionWidget({ model }: { model: unknown }) {
|
|
|
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case 0:
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return (
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<ConnectionTypeSelect
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connectionTypeChoices={
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-
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connectionTypeChoices={
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pluginManager.getElementTypesInGroup(
|
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+
'connection',
|
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) as ConnectionType[]
|
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}
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connectionType={connectionType}
|
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setConnectionType={c => {
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setConnectionType(c)
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@@ -2,8 +2,7 @@ import React from 'react'
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2
2
|
import { observer } from 'mobx-react'
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3
3
|
import { FormControl, FormHelperText, Select, MenuItem } from '@mui/material'
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4
4
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import { AddTrackWorkflowType } from '@jbrowse/core/pluggableElementTypes'
|
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5
|
-
import { useLocalStorage } from '@jbrowse/core/util'
|
|
6
|
-
import { getEnv } from 'mobx-state-tree'
|
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5
|
+
import { getEnv, useLocalStorage } from '@jbrowse/core/util'
|
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7
6
|
|
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8
7
|
// locals
|
|
9
8
|
import { AddTrackModel } from '../model'
|
|
@@ -1,10 +1,4 @@
|
|
|
1
1
|
import React, { useEffect, useState } from 'react'
|
|
2
|
-
import { readConfObject } from '@jbrowse/core/configuration'
|
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3
|
-
import {
|
|
4
|
-
supportedIndexingAdapters,
|
|
5
|
-
getSession,
|
|
6
|
-
isElectron,
|
|
7
|
-
} from '@jbrowse/core/util'
|
|
8
2
|
import {
|
|
9
3
|
Card,
|
|
10
4
|
CardContent,
|
|
@@ -24,19 +18,23 @@ import {
|
|
|
24
18
|
Typography,
|
|
25
19
|
} from '@mui/material'
|
|
26
20
|
import { makeStyles } from 'tss-react/mui'
|
|
27
|
-
|
|
28
|
-
|
|
29
|
-
|
|
30
|
-
|
|
31
|
-
|
|
21
|
+
import { readConfObject } from '@jbrowse/core/configuration'
|
|
22
|
+
import {
|
|
23
|
+
supportedIndexingAdapters,
|
|
24
|
+
getSession,
|
|
25
|
+
getEnv,
|
|
26
|
+
isElectron,
|
|
27
|
+
} from '@jbrowse/core/util'
|
|
32
28
|
import PluginManager from '@jbrowse/core/PluginManager'
|
|
33
29
|
import { observer } from 'mobx-react'
|
|
34
|
-
import { getEnv } from 'mobx-state-tree'
|
|
35
30
|
import { UNKNOWN } from '@jbrowse/core/util/tracks'
|
|
31
|
+
import { AdapterMetadata } from '@jbrowse/core/pluggableElementTypes/AdapterType'
|
|
36
32
|
|
|
33
|
+
// icons
|
|
34
|
+
import DeleteIcon from '@mui/icons-material/Delete'
|
|
35
|
+
import AddIcon from '@mui/icons-material//Add'
|
|
37
36
|
// locals
|
|
38
37
|
import { AddTrackModel } from '../model'
|
|
39
|
-
import { AdapterMetadata } from '@jbrowse/core/pluggableElementTypes/AdapterType'
|
|
40
38
|
|
|
41
39
|
const useStyles = makeStyles()(theme => ({
|
|
42
40
|
spacing: {
|
|
@@ -9,6 +9,7 @@ import {
|
|
|
9
9
|
Typography,
|
|
10
10
|
} from '@mui/material'
|
|
11
11
|
import { makeStyles } from 'tss-react/mui'
|
|
12
|
+
import { getRoot } from 'mobx-state-tree'
|
|
12
13
|
|
|
13
14
|
import {
|
|
14
15
|
getSession,
|
|
@@ -17,7 +18,6 @@ import {
|
|
|
17
18
|
} from '@jbrowse/core/util'
|
|
18
19
|
import { getConf } from '@jbrowse/core/configuration'
|
|
19
20
|
import { observer } from 'mobx-react'
|
|
20
|
-
import { getEnv } from 'mobx-state-tree'
|
|
21
21
|
|
|
22
22
|
// locals
|
|
23
23
|
import ConfirmTrack from './ConfirmTrack'
|
|
@@ -52,9 +52,9 @@ const steps = ['Enter track data', 'Confirm track type']
|
|
|
52
52
|
function AddTrackWorkflow({ model }: { model: AddTrackModel }) {
|
|
53
53
|
const [activeStep, setActiveStep] = useState(0)
|
|
54
54
|
const { classes } = useStyles()
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
const { jobsManager } =
|
|
55
|
+
|
|
56
|
+
// eslint-disable-next-line @typescript-eslint/no-explicit-any
|
|
57
|
+
const { jobsManager } = getRoot<any>(model)
|
|
58
58
|
const session = getSession(model)
|
|
59
59
|
const {
|
|
60
60
|
assembly,
|
|
@@ -1,16 +1,11 @@
|
|
|
1
1
|
import React, { Suspense, lazy, useState } from 'react'
|
|
2
|
-
import { makeStyles } from 'tss-react/mui'
|
|
3
2
|
import { Badge, IconButton, InputAdornment, TextField } from '@mui/material'
|
|
4
|
-
|
|
5
|
-
import
|
|
6
|
-
import MenuIcon from '@mui/icons-material/Menu'
|
|
7
|
-
import ShoppingCartIcon from '@mui/icons-material/ShoppingCart'
|
|
8
|
-
import { Cable } from '@jbrowse/core/ui/Icons'
|
|
9
|
-
|
|
10
|
-
// other
|
|
3
|
+
import { makeStyles } from 'tss-react/mui'
|
|
4
|
+
import { observer } from 'mobx-react'
|
|
11
5
|
import JBrowseMenu, { MenuItem } from '@jbrowse/core/ui/Menu'
|
|
12
6
|
import {
|
|
13
7
|
getSession,
|
|
8
|
+
getEnv,
|
|
14
9
|
isSessionModelWithWidgets,
|
|
15
10
|
isSessionModelWithConnections,
|
|
16
11
|
isSessionWithAddTracks,
|
|
@@ -19,8 +14,12 @@ import {
|
|
|
19
14
|
AnyConfigurationModel,
|
|
20
15
|
readConfObject,
|
|
21
16
|
} from '@jbrowse/core/configuration'
|
|
22
|
-
|
|
23
|
-
|
|
17
|
+
|
|
18
|
+
// icons
|
|
19
|
+
import ClearIcon from '@mui/icons-material/Clear'
|
|
20
|
+
import MenuIcon from '@mui/icons-material/Menu'
|
|
21
|
+
import ShoppingCartIcon from '@mui/icons-material/ShoppingCart'
|
|
22
|
+
import { Cable } from '@jbrowse/core/ui/Icons'
|
|
24
23
|
|
|
25
24
|
// locals
|
|
26
25
|
import { HierarchicalTrackSelectorModel } from '../model'
|
|
@@ -1,16 +1,11 @@
|
|
|
1
|
-
import {
|
|
2
|
-
types,
|
|
3
|
-
getParent,
|
|
4
|
-
getEnv,
|
|
5
|
-
getSnapshot,
|
|
6
|
-
Instance,
|
|
7
|
-
} from 'mobx-state-tree'
|
|
1
|
+
import { types, getSnapshot, Instance } from 'mobx-state-tree'
|
|
8
2
|
import {
|
|
9
3
|
getConf,
|
|
10
4
|
readConfObject,
|
|
11
5
|
AnyConfigurationModel,
|
|
12
6
|
} from '@jbrowse/core/configuration'
|
|
13
|
-
import { getSession } from '@jbrowse/core/util'
|
|
7
|
+
import { AbstractSessionModel, getSession, getEnv } from '@jbrowse/core/util'
|
|
8
|
+
import { getTrackName } from '@jbrowse/core/util/tracks'
|
|
14
9
|
import { ElementId } from '@jbrowse/core/util/types/mst'
|
|
15
10
|
import PluginManager from '@jbrowse/core/PluginManager'
|
|
16
11
|
|
|
@@ -18,28 +13,19 @@ function hasAnyOverlap<T>(a1: T[] = [], a2: T[] = []) {
|
|
|
18
13
|
return !!a1.find(value => a2.includes(value))
|
|
19
14
|
}
|
|
20
15
|
|
|
21
|
-
function passesFilter(
|
|
16
|
+
function passesFilter(
|
|
17
|
+
filter: string,
|
|
18
|
+
config: AnyConfigurationModel,
|
|
19
|
+
session: AbstractSessionModel,
|
|
20
|
+
) {
|
|
22
21
|
const categories = readConfObject(config, 'category') as string[] | undefined
|
|
23
22
|
const filterLower = filter.toLowerCase()
|
|
24
23
|
return (
|
|
25
|
-
getTrackName(config).toLowerCase().includes(filterLower) ||
|
|
24
|
+
getTrackName(config, session).toLowerCase().includes(filterLower) ||
|
|
26
25
|
!!categories?.filter(c => c.toLowerCase().includes(filterLower)).length
|
|
27
26
|
)
|
|
28
27
|
}
|
|
29
28
|
|
|
30
|
-
function getTrackName(config: AnyConfigurationModel): string {
|
|
31
|
-
if (!config.trackId) {
|
|
32
|
-
throw new Error('not a track')
|
|
33
|
-
}
|
|
34
|
-
return (
|
|
35
|
-
readConfObject(config, 'name') ||
|
|
36
|
-
`Reference sequence (${
|
|
37
|
-
readConfObject(getParent(config), 'displayName') ||
|
|
38
|
-
readConfObject(getParent(config), 'name')
|
|
39
|
-
})`
|
|
40
|
-
)
|
|
41
|
-
}
|
|
42
|
-
|
|
43
29
|
export type TreeNode = {
|
|
44
30
|
name: string
|
|
45
31
|
id: string
|
|
@@ -79,9 +65,10 @@ export function generateHierarchy(
|
|
|
79
65
|
) {
|
|
80
66
|
const hierarchy = { children: [] as TreeNode[] } as TreeNode
|
|
81
67
|
const { filterText, view } = model
|
|
68
|
+
const session = getSession(model)
|
|
82
69
|
|
|
83
70
|
trackConfigurations
|
|
84
|
-
.filter(conf => passesFilter(filterText, conf))
|
|
71
|
+
.filter(conf => passesFilter(filterText, conf, session))
|
|
85
72
|
.forEach(conf => {
|
|
86
73
|
// copy the categories since this array can be mutated downstream
|
|
87
74
|
const categories = [...(readConfObject(conf, 'category') || [])]
|
|
@@ -121,7 +108,7 @@ export function generateHierarchy(
|
|
|
121
108
|
0,
|
|
122
109
|
{
|
|
123
110
|
id: conf.trackId,
|
|
124
|
-
name: getTrackName(conf),
|
|
111
|
+
name: getTrackName(conf, session),
|
|
125
112
|
conf,
|
|
126
113
|
checked: !!tracks.find(f => f.configuration === conf),
|
|
127
114
|
children: [],
|
|
@@ -1,8 +1,7 @@
|
|
|
1
1
|
import React, { useState } from 'react'
|
|
2
|
-
import PluginManager from '@jbrowse/core/PluginManager'
|
|
3
2
|
import { observer } from 'mobx-react'
|
|
4
|
-
import {
|
|
5
|
-
import { getSession } from '@jbrowse/core/util'
|
|
3
|
+
import { getParent } from 'mobx-state-tree'
|
|
4
|
+
import { getSession, getEnv } from '@jbrowse/core/util'
|
|
6
5
|
import {
|
|
7
6
|
JBrowsePlugin,
|
|
8
7
|
isSessionWithSessionPlugins,
|
|
@@ -52,7 +51,7 @@ function PluginCard({
|
|
|
52
51
|
}) {
|
|
53
52
|
const { classes } = useStyles()
|
|
54
53
|
const session = getSession(model)
|
|
55
|
-
const { pluginManager } = getEnv(model)
|
|
54
|
+
const { pluginManager } = getEnv(model)
|
|
56
55
|
const isInstalled = Boolean(
|
|
57
56
|
pluginManager.runtimePluginDefinitions.find(def => def.url === plugin.url),
|
|
58
57
|
)
|