@jbrowse/plugin-data-management 2.1.2 → 2.1.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/HierarchicalTrackSelectorWidget/model.js +2 -1
- package/dist/HierarchicalTrackSelectorWidget/model.js.map +1 -1
- package/esm/HierarchicalTrackSelectorWidget/model.js +2 -1
- package/esm/HierarchicalTrackSelectorWidget/model.js.map +1 -1
- package/package.json +2 -2
- package/src/AddConnectionWidget/components/__snapshots__/AddConnectionWidget.test.js.snap +0 -1
- package/src/HierarchicalTrackSelectorWidget/components/{HierarchicalTrackSelector.test.js → HierarchicalTrackSelector.test.tsx} +25 -9
- package/src/HierarchicalTrackSelectorWidget/components/__snapshots__/{HierarchicalTrackSelector.test.js.snap → HierarchicalTrackSelector.test.tsx.snap} +0 -0
- package/src/HierarchicalTrackSelectorWidget/model.ts +4 -1
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@@ -19,7 +19,8 @@ function getTrackName(config) {
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throw new Error('not a track');
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}
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return ((0, configuration_1.readConfObject)(config, 'name') ||
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-
`Reference sequence (${(0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(config), '
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`Reference sequence (${(0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(config), 'displayName') ||
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(0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(config), 'name')})`);
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}
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function filterTracks(tracks, self, assemblyName) {
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const { assemblyManager } = (0, util_1.getSession)(self);
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":";;;AAAA,qDAAoE;AACpE,+DAIoC;AACpC,6CAA+C;AAC/C,sDAAwD;AAGxD,SAAS,aAAa,CAAI,KAAU,EAAE,EAAE,KAAU,EAAE;IAClD,OAAO,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,SAAS,YAAY,CAAC,MAAc,EAAE,MAA6B;IACjE,MAAM,UAAU,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,UAAU,CAAyB,CAAA;IAC7E,MAAM,WAAW,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;IACxC,OAAO,CACL,YAAY,CAAC,MAAM,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;QACxD,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,EAAE,MAAM,CAAA,CACxE,CAAA;AACH,CAAC;AAED,SAAS,YAAY,CAAC,MAA6B;IACjD,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE;QACnB,MAAM,IAAI,KAAK,CAAC,aAAa,CAAC,CAAA;KAC/B;IACD,OAAO,CACL,IAAA,8BAAc,EAAC,MAAM,EAAE,MAAM,CAAC;QAC9B,
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1
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+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":";;;AAAA,qDAAoE;AACpE,+DAIoC;AACpC,6CAA+C;AAC/C,sDAAwD;AAGxD,SAAS,aAAa,CAAI,KAAU,EAAE,EAAE,KAAU,EAAE;IAClD,OAAO,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,SAAS,YAAY,CAAC,MAAc,EAAE,MAA6B;IACjE,MAAM,UAAU,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,UAAU,CAAyB,CAAA;IAC7E,MAAM,WAAW,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;IACxC,OAAO,CACL,YAAY,CAAC,MAAM,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;QACxD,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,EAAE,MAAM,CAAA,CACxE,CAAA;AACH,CAAC;AAED,SAAS,YAAY,CAAC,MAA6B;IACjD,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE;QACnB,MAAM,IAAI,KAAK,CAAC,aAAa,CAAC,CAAA;KAC/B;IACD,OAAO,CACL,IAAA,8BAAc,EAAC,MAAM,EAAE,MAAM,CAAC;QAC9B,uBACE,IAAA,8BAAc,EAAC,IAAA,2BAAS,EAAC,MAAM,CAAC,EAAE,aAAa,CAAC;YAChD,IAAA,8BAAc,EAAC,IAAA,2BAAS,EAAC,MAAM,CAAC,EAAE,MAAM,CAC1C,GAAG,CACJ,CAAA;AACH,CAAC;AAWD,SAAS,YAAY,CACnB,MAA+B,EAC/B,IAAgC,EAChC,YAAoB;IAEpB,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;IAC5C,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,wBAAM,EAAC,IAAI,CAAC,CAAA;IACtC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAElD,IAAI,CAAC,QAAQ,EAAE;QACb,OAAO,EAAE,CAAA;KACV;IACD,OAAO,MAAM;SACV,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,mBAAmB,GAAG,IAAA,8BAAc,EAAC,CAAC,EAAE,eAAe,CAAC,CAAA;QAC9D,MAAM,EAAE,UAAU,EAAE,GAAG,QAAQ,CAAA;QAC/B,OAAO,aAAa,CAAC,UAAU,EAAE,mBAAmB,CAAC,CAAA;IACvD,CAAC,CAAC;SACD,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,EAAE,YAAY,EAAE,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClE,MAAM,cAAc,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACxE,MAAM,aAAa,GAAG,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACrE,OAAO,aAAa,CAAC,cAAc,EAAE,aAAa,CAAC,CAAA;IACrD,CAAC,CAAC,CAAA;AACN,CAAC;AAED,SAAgB,iBAAiB,CAC/B,KAAqC,EACrC,mBAA4C,EAC5C,SAAwD;IAExD,MAAM,SAAS,GAAG,EAAE,QAAQ,EAAE,EAAgB,EAAc,CAAA;IAC5D,MAAM,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAElC,mBAAmB;SAChB,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE,IAAI,CAAC,CAAC;SAC9C,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,iEAAiE;QACjE,MAAM,UAAU,GAAG,CAAC,GAAG,CAAC,IAAA,8BAAc,EAAC,IAAI,EAAE,UAAU,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;QAEhE,uEAAuE;QACvE,kEAAkE;QAClE,0BAA0B;QAC1B,IAAI,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAE;YACzC,UAAU,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;SACtC;QAED,IAAI,SAAS,GAAG,SAAS,CAAA;QAEzB,wDAAwD;QACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC1C,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YAC9B,MAAM,GAAG,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAA;YAC7D,MAAM,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;YAC/C,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,CAAC,GAAG;oBACR,QAAQ,EAAE,EAAE;oBACZ,IAAI,EAAE,QAAQ;oBACd,EAAE;oBACF,eAAe,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC;iBACpC,CAAA;gBACD,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBAC1B,SAAS,GAAG,CAAC,CAAA;aACd;iBAAM;gBACL,SAAS,GAAG,GAAG,CAAA;aAChB;SACF;QACD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAoD,CAAA;QAExE,uEAAuE;QACvE,SAAS,CAAC,QAAQ,CAAC,MAAM,CACvB,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,EACxD,CAAC,EACD;YACE,EAAE,EAAE,IAAI,CAAC,OAAO;YAChB,IAAI,EAAE,YAAY,CAAC,IAAI,CAAC;YACxB,IAAI;YACJ,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,KAAK,IAAI,CAAC;YACrD,QAAQ,EAAE,EAAE;SACb,CACF,CAAA;IACH,CAAC,CAAC,CAAA;IAEJ,OAAO,SAAS,CAAC,QAAQ,CAAA;AAC3B,CAAC;AA1DD,8CA0DC;AAED,SAAwB,gBAAgB,CAAC,aAA4B;IACnE,OAAO,uBAAK;SACT,KAAK,CAAC,iCAAiC,EAAE;QACxC,EAAE,EAAE,eAAS;QACb,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,iCAAiC,CAAC;QACtD,SAAS,EAAE,uBAAK,CAAC,GAAG,CAAC,uBAAK,CAAC,OAAO,CAAC;QACnC,UAAU,EAAE,EAAE;QACd,IAAI,EAAE,uBAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;KACF,CAAC;SACD,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,EAA6B;KACzC,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,cAAc,CAAC,GAA4B;YACzC,IAAI,CAAC,SAAS,GAAG,CAAC,GAAG,IAAI,CAAC,SAAS,EAAE,GAAG,GAAG,CAAC,CAAA;QAC9C,CAAC;QACD,mBAAmB,CAAC,GAA4B;YAC9C,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;QAC/D,CAAC;QACD,cAAc;YACZ,IAAI,CAAC,SAAS,GAAG,EAAE,CAAA;QACrB,CAAC;QACD,OAAO,CAAC,IAAa;YACnB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;QACD,cAAc,CAAC,QAAgB;YAC7B,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QAC7D,CAAC;QACD,eAAe;YACb,IAAI,CAAC,UAAU,GAAG,EAAE,CAAA;QACtB,CAAC;QACD,aAAa,CAAC,OAAe;YAC3B,IAAI,CAAC,UAAU,GAAG,OAAO,CAAA;QAC3B,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,kBAAkB,CAAC,YAAoB;YACrC,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;YAC5C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,MAAM,SAAS,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,aAAa,CAAC,QAAQ,CAAA;YAClD,MAAM,QAAQ,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC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}
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return (readConfObject(config, 'name') ||
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`Reference sequence (${readConfObject(getParent(config), '
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`Reference sequence (${readConfObject(getParent(config), 'displayName') ||
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readConfObject(getParent(config), 'name')})`);
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}
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function filterTracks(tracks, self, assemblyName) {
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{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAY,MAAM,iBAAiB,CAAA;AACpE,OAAO,EACL,OAAO,EACP,cAAc,GAEf,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAGxD,SAAS,aAAa,CAAI,KAAU,EAAE,EAAE,KAAU,EAAE;IAClD,OAAO,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,SAAS,YAAY,CAAC,MAAc,EAAE,MAA6B;IACjE,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAyB,CAAA;IAC7E,MAAM,WAAW,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;IACxC,OAAO,CACL,YAAY,CAAC,MAAM,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;QACxD,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,EAAE,MAAM,CAAA,CACxE,CAAA;AACH,CAAC;AAED,SAAS,YAAY,CAAC,MAA6B;IACjD,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE;QACnB,MAAM,IAAI,KAAK,CAAC,aAAa,CAAC,CAAA;KAC/B;IACD,OAAO,CACL,cAAc,CAAC,MAAM,EAAE,MAAM,CAAC;QAC9B,
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+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAY,MAAM,iBAAiB,CAAA;AACpE,OAAO,EACL,OAAO,EACP,cAAc,GAEf,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAGxD,SAAS,aAAa,CAAI,KAAU,EAAE,EAAE,KAAU,EAAE;IAClD,OAAO,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,SAAS,YAAY,CAAC,MAAc,EAAE,MAA6B;IACjE,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAyB,CAAA;IAC7E,MAAM,WAAW,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;IACxC,OAAO,CACL,YAAY,CAAC,MAAM,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;QACxD,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,EAAE,MAAM,CAAA,CACxE,CAAA;AACH,CAAC;AAED,SAAS,YAAY,CAAC,MAA6B;IACjD,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE;QACnB,MAAM,IAAI,KAAK,CAAC,aAAa,CAAC,CAAA;KAC/B;IACD,OAAO,CACL,cAAc,CAAC,MAAM,EAAE,MAAM,CAAC;QAC9B,uBACE,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,aAAa,CAAC;YAChD,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,MAAM,CAC1C,GAAG,CACJ,CAAA;AACH,CAAC;AAWD,SAAS,YAAY,CACnB,MAA+B,EAC/B,IAAgC,EAChC,YAAoB;IAEpB,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;IAC5C,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IACtC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAElD,IAAI,CAAC,QAAQ,EAAE;QACb,OAAO,EAAE,CAAA;KACV;IACD,OAAO,MAAM;SACV,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,mBAAmB,GAAG,cAAc,CAAC,CAAC,EAAE,eAAe,CAAC,CAAA;QAC9D,MAAM,EAAE,UAAU,EAAE,GAAG,QAAQ,CAAA;QAC/B,OAAO,aAAa,CAAC,UAAU,EAAE,mBAAmB,CAAC,CAAA;IACvD,CAAC,CAAC;SACD,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,EAAE,YAAY,EAAE,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClE,MAAM,cAAc,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACxE,MAAM,aAAa,GAAG,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACrE,OAAO,aAAa,CAAC,cAAc,EAAE,aAAa,CAAC,CAAA;IACrD,CAAC,CAAC,CAAA;AACN,CAAC;AAED,MAAM,UAAU,iBAAiB,CAC/B,KAAqC,EACrC,mBAA4C,EAC5C,SAAwD;IAExD,MAAM,SAAS,GAAG,EAAE,QAAQ,EAAE,EAAgB,EAAc,CAAA;IAC5D,MAAM,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAElC,mBAAmB;SAChB,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE,IAAI,CAAC,CAAC;SAC9C,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,iEAAiE;QACjE,MAAM,UAAU,GAAG,CAAC,GAAG,CAAC,cAAc,CAAC,IAAI,EAAE,UAAU,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;QAEhE,uEAAuE;QACvE,kEAAkE;QAClE,0BAA0B;QAC1B,IAAI,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAE;YACzC,UAAU,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;SACtC;QAED,IAAI,SAAS,GAAG,SAAS,CAAA;QAEzB,wDAAwD;QACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC1C,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YAC9B,MAAM,GAAG,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAA;YAC7D,MAAM,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;YAC/C,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,CAAC,GAAG;oBACR,QAAQ,EAAE,EAAE;oBACZ,IAAI,EAAE,QAAQ;oBACd,EAAE;oBACF,eAAe,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC;iBACpC,CAAA;gBACD,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBAC1B,SAAS,GAAG,CAAC,CAAA;aACd;iBAAM;gBACL,SAAS,GAAG,GAAG,CAAA;aAChB;SACF;QACD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAoD,CAAA;QAExE,uEAAuE;QACvE,SAAS,CAAC,QAAQ,CAAC,MAAM,CACvB,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,EACxD,CAAC,EACD;YACE,EAAE,EAAE,IAAI,CAAC,OAAO;YAChB,IAAI,EAAE,YAAY,CAAC,IAAI,CAAC;YACxB,IAAI;YACJ,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,KAAK,IAAI,CAAC;YACrD,QAAQ,EAAE,EAAE;SACb,CACF,CAAA;IACH,CAAC,CAAC,CAAA;IAEJ,OAAO,SAAS,CAAC,QAAQ,CAAA;AAC3B,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,gBAAgB,CAAC,aAA4B;IACnE,OAAO,KAAK;SACT,KAAK,CAAC,iCAAiC,EAAE;QACxC,EAAE,EAAE,SAAS;QACb,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,iCAAiC,CAAC;QACtD,SAAS,EAAE,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC;QACnC,UAAU,EAAE,EAAE;QACd,IAAI,EAAE,KAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;KACF,CAAC;SACD,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,EAA6B;KACzC,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,cAAc,CAAC,GAA4B;YACzC,IAAI,CAAC,SAAS,GAAG,CAAC,GAAG,IAAI,CAAC,SAAS,EAAE,GAAG,GAAG,CAAC,CAAA;QAC9C,CAAC;QACD,mBAAmB,CAAC,GAA4B;YAC9C,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;QAC/D,CAAC;QACD,cAAc;YACZ,IAAI,CAAC,SAAS,GAAG,EAAE,CAAA;QACrB,CAAC;QACD,OAAO,CAAC,IAAa;YACnB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;QACD,cAAc,CAAC,QAAgB;YAC7B,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QAC7D,CAAC;QACD,eAAe;YACb,IAAI,CAAC,UAAU,GAAG,EAAE,CAAA;QACtB,CAAC;QACD,aAAa,CAAC,OAAe;YAC3B,IAAI,CAAC,UAAU,GAAG,OAAO,CAAA;QAC3B,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,kBAAkB,CAAC,YAAoB;YACrC,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAC5C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,MAAM,SAAS,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,aAAa,CAAC,QAAQ,CAAA;YAClD,MAAM,QAAQ,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;YAC1D,IAAI,CAAC,SAAS,EAAE;gBACd,OAAO,SAAS,CAAA;aACjB;YACD,KAAK,MAAM,OAAO,IAAI,SAAS,CAAC,QAAQ,EAAE;gBACxC,IAAI,QAAQ,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,OAAO,CAAC,IAAI,CAAC,EAAE;oBAC5D,OAAO,SAAS,CAAA;iBACjB;aACF;QACH,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,mBAAmB,CAAC,YAAoB;YACtC,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE;gBACd,OAAO,EAAE,CAAA;aACV;YACD,MAAM,EAAE,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YACpD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,IAAI,CAAC,QAAQ,EAAE;gBACb,OAAO,EAAE,CAAA;aACV;YACD,MAAM,MAAM,GAAG,IAAI,CAAC,kBAAkB,CAAC,YAAY,CAAC,CAAA;YACpD,qEAAqE;YACrE,sCAAsC;YACtC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,MAAM,CAAC;gBACrC,GAAG,YAAY,CAAC,MAAM,EAAE,IAAI,EAAE,YAAY,CAAC;aAC5C,CAAC,CAAA;QACJ,CAAC;QAED,IAAI,aAAa;;YACf,OAAO,CAAA,MAAA,IAAI,CAAC,IAAI,0CAAE,aAAa,KAAI,EAAE,CAAA;QACvC,CAAC;QAED,6BAA6B,CAC3B,YAAoB,EACpB,UAA+C;YAE/C,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE;gBACd,OAAO,EAAE,CAAA;aACV;YAED,+DAA+D;YAC/D,OAAO,YAAY,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,EAAE,YAAY,CAAC,CAAA;QAC5D,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,SAAS,CAAC,YAAoB;YAC5B,MAAM,IAAI,GAAG,iBAAiB;YAC5B,8DAA8D;YAC9D,IAAW,EACX,IAAI,CAAC,mBAAmB,CAAC,YAAY,CAAC,EACtC,IAAI,CAAC,SAAS,CACf,CAAA;YAED,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAChC,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,GAAG,OAAO,CAAA;YACpD,MAAM,KAAK,GACT,CAAA,mBAAmB,aAAnB,mBAAmB,uBAAnB,mBAAmB,CACf,MAAM,CAAC,CAAC,CAAC,EAAE;gBACX,MAAM,KAAK,GAAG,OAAO,CAAC,CAAC,EAAE,eAAe,CAAC,CAAA;gBACzC,OAAO,KAAK,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,KAAK,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAA;YACjE,CAAC,EACA,GAAG,CAAC,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE;gBACnB,MAAM,CAAC,GAAG,WAAW,CAAC,KAAK,CAAC,CAAA;gBAC5B,OAAO;oBACL,EAAE,EAAE,CAAC,CAAC,YAAY;oBAClB,IAAI,EAAE,cAAc,CAAC,CAAC,EAAE,MAAM,CAAC;oBAC/B,QAAQ,EAAE,IAAI,CAAC,mBAAmB,CAAC,YAAY,EAAE,IAAI,CAAC;oBACtD,KAAK,EAAE;wBACL,QAAQ,EAAE,IAAI;qBACf;iBACF,CAAA;YACH,CAAC,CAAC,KAAI,EAAE,CAAA;YAEZ,OAAO;gBACL,IAAI,EAAE,MAAM;gBACZ,EAAE,EAAE,MAAM;gBACV,QAAQ,EAAE;oBACR,EAAE,IAAI,EAAE,QAAQ,EAAE,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,IAAI,EAAE;oBAChD,GAAG,KAAK;iBACT;aACF,CAAA;QACH,CAAC;QAED,mBAAmB,CACjB,YAAoB,EACpB,UAA+C;YAE/C,OAAO,iBAAiB;YACtB,8DAA8D;YAC9D,IAAW,EACX,IAAI,CAAC,6BAA6B,CAAC,YAAY,EAAE,UAAU,CAAC,EAC5D,IAAI,CAAC,SAAS,CACf,CAAA;QACH,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-data-management",
|
|
3
|
-
"version": "2.1.
|
|
3
|
+
"version": "2.1.4",
|
|
4
4
|
"description": "JBrowse 2 linear genome view",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -61,5 +61,5 @@
|
|
|
61
61
|
"distModule": "esm/index.js",
|
|
62
62
|
"srcModule": "src/index.ts",
|
|
63
63
|
"module": "esm/index.js",
|
|
64
|
-
"gitHead": "
|
|
64
|
+
"gitHead": "8f53e016dd83b01a1beea0fc61c33964f5b6c809"
|
|
65
65
|
}
|
|
@@ -77,7 +77,6 @@ exports[`<AddConnectionWidget /> renders 1`] = `
|
|
|
77
77
|
</label>
|
|
78
78
|
<div
|
|
79
79
|
class="MuiInputBase-root MuiOutlinedInput-root MuiInputBase-colorPrimary MuiInputBase-fullWidth MuiInputBase-formControl css-md26zr-MuiInputBase-root-MuiOutlinedInput-root"
|
|
80
|
-
variant="outlined"
|
|
81
80
|
>
|
|
82
81
|
<div
|
|
83
82
|
aria-describedby="mui-1-helper-text"
|
|
@@ -1,11 +1,17 @@
|
|
|
1
|
+
/* eslint-disable @typescript-eslint/no-non-null-assertion */
|
|
2
|
+
|
|
3
|
+
import React from 'react'
|
|
1
4
|
import { createJBrowseTheme } from '@jbrowse/core/ui'
|
|
2
5
|
import { createTestSession } from '@jbrowse/web/src/rootModel'
|
|
3
|
-
import { ThemeProvider } from '@mui/material/styles'
|
|
4
6
|
import { cleanup, render } from '@testing-library/react'
|
|
5
|
-
import
|
|
7
|
+
import { ThemeProvider } from '@mui/material/styles'
|
|
8
|
+
|
|
9
|
+
// locals
|
|
6
10
|
import HierarchicalTrackSelector from './HierarchicalTrackSelector'
|
|
11
|
+
|
|
7
12
|
jest.mock('@jbrowse/web/src/makeWorkerInstance', () => () => {})
|
|
8
13
|
|
|
14
|
+
// @ts-ignore
|
|
9
15
|
window.requestIdleCallback = cb => cb()
|
|
10
16
|
window.cancelIdleCallback = () => {}
|
|
11
17
|
|
|
@@ -14,11 +20,12 @@ describe('HierarchicalTrackSelector widget', () => {
|
|
|
14
20
|
|
|
15
21
|
it('renders nothing with no assembly', () => {
|
|
16
22
|
const session = createTestSession()
|
|
17
|
-
const firstView = session
|
|
23
|
+
const firstView = session!.addView('LinearGenomeView')
|
|
18
24
|
const model = firstView.activateTrackSelector()
|
|
19
25
|
|
|
20
26
|
const { container } = render(
|
|
21
27
|
<ThemeProvider theme={createJBrowseTheme()}>
|
|
28
|
+
{/* @ts-ignore*/}
|
|
22
29
|
<HierarchicalTrackSelector model={model} />
|
|
23
30
|
</ThemeProvider>,
|
|
24
31
|
)
|
|
@@ -27,6 +34,7 @@ describe('HierarchicalTrackSelector widget', () => {
|
|
|
27
34
|
|
|
28
35
|
it('renders with a couple of uncategorized tracks', async () => {
|
|
29
36
|
const session = createTestSession()
|
|
37
|
+
// @ts-ignore
|
|
30
38
|
session.addAssemblyConf({
|
|
31
39
|
name: 'volMyt1',
|
|
32
40
|
sequence: {
|
|
@@ -46,19 +54,21 @@ describe('HierarchicalTrackSelector widget', () => {
|
|
|
46
54
|
},
|
|
47
55
|
},
|
|
48
56
|
})
|
|
57
|
+
// @ts-ignore
|
|
49
58
|
session.addTrackConf({
|
|
50
59
|
trackId: 'fooC',
|
|
51
60
|
assemblyNames: ['volMyt1'],
|
|
52
61
|
type: 'FeatureTrack',
|
|
53
62
|
adapter: { type: 'FromConfigAdapter', features: [] },
|
|
54
63
|
})
|
|
64
|
+
// @ts-ignore
|
|
55
65
|
session.addTrackConf({
|
|
56
66
|
trackId: 'barC',
|
|
57
67
|
assemblyNames: ['volMyt1'],
|
|
58
68
|
type: 'FeatureTrack',
|
|
59
69
|
adapter: { type: 'FromConfigAdapter', features: [] },
|
|
60
70
|
})
|
|
61
|
-
const firstView = session
|
|
71
|
+
const firstView = session!.addView('LinearGenomeView', {
|
|
62
72
|
displayedRegions: [
|
|
63
73
|
{
|
|
64
74
|
assemblyName: 'volMyt1',
|
|
@@ -68,12 +78,13 @@ describe('HierarchicalTrackSelector widget', () => {
|
|
|
68
78
|
},
|
|
69
79
|
],
|
|
70
80
|
})
|
|
71
|
-
firstView.showTrack(session
|
|
72
|
-
firstView.showTrack(session
|
|
81
|
+
firstView.showTrack(session!.sessionTracks[0].trackId)
|
|
82
|
+
firstView.showTrack(session!.sessionTracks[1].trackId)
|
|
73
83
|
const model = firstView.activateTrackSelector()
|
|
74
84
|
|
|
75
85
|
const { container, findByTestId } = render(
|
|
76
86
|
<ThemeProvider theme={createJBrowseTheme()}>
|
|
87
|
+
{/* @ts-ignore*/}
|
|
77
88
|
<HierarchicalTrackSelector model={model} />
|
|
78
89
|
</ThemeProvider>,
|
|
79
90
|
)
|
|
@@ -83,6 +94,7 @@ describe('HierarchicalTrackSelector widget', () => {
|
|
|
83
94
|
|
|
84
95
|
it('renders with a couple of categorized tracks', async () => {
|
|
85
96
|
const session = createTestSession()
|
|
97
|
+
// @ts-ignore
|
|
86
98
|
session.addAssemblyConf({
|
|
87
99
|
name: 'volMyt1',
|
|
88
100
|
sequence: {
|
|
@@ -102,19 +114,22 @@ describe('HierarchicalTrackSelector widget', () => {
|
|
|
102
114
|
},
|
|
103
115
|
},
|
|
104
116
|
})
|
|
117
|
+
|
|
118
|
+
// @ts-ignore
|
|
105
119
|
session.addTrackConf({
|
|
106
120
|
trackId: 'fooC',
|
|
107
121
|
assemblyNames: ['volMyt1'],
|
|
108
122
|
type: 'FeatureTrack',
|
|
109
123
|
adapter: { type: 'FromConfigAdapter', features: [] },
|
|
110
124
|
})
|
|
125
|
+
// @ts-ignore
|
|
111
126
|
session.addTrackConf({
|
|
112
127
|
trackId: 'barC',
|
|
113
128
|
assemblyNames: ['volMyt1'],
|
|
114
129
|
type: 'FeatureTrack',
|
|
115
130
|
adapter: { type: 'FromConfigAdapter', features: [] },
|
|
116
131
|
})
|
|
117
|
-
const firstView = session
|
|
132
|
+
const firstView = session!.addView('LinearGenomeView', {
|
|
118
133
|
displayedRegions: [
|
|
119
134
|
{
|
|
120
135
|
assemblyName: 'volMyt1',
|
|
@@ -124,8 +139,8 @@ describe('HierarchicalTrackSelector widget', () => {
|
|
|
124
139
|
},
|
|
125
140
|
],
|
|
126
141
|
})
|
|
127
|
-
firstView.showTrack(session
|
|
128
|
-
firstView.showTrack(session
|
|
142
|
+
firstView.showTrack(session!.sessionTracks[0].trackId)
|
|
143
|
+
firstView.showTrack(session!.sessionTracks[1].trackId)
|
|
129
144
|
firstView.tracks[0].configuration.category.set(['Foo Category'])
|
|
130
145
|
firstView.tracks[1].configuration.category.set([
|
|
131
146
|
'Foo Category',
|
|
@@ -135,6 +150,7 @@ describe('HierarchicalTrackSelector widget', () => {
|
|
|
135
150
|
|
|
136
151
|
const { container, findByTestId } = render(
|
|
137
152
|
<ThemeProvider theme={createJBrowseTheme()}>
|
|
153
|
+
{/* @ts-ignore*/}
|
|
138
154
|
<HierarchicalTrackSelector model={model} />
|
|
139
155
|
</ThemeProvider>,
|
|
140
156
|
)
|
|
File without changes
|
|
@@ -27,7 +27,10 @@ function getTrackName(config: AnyConfigurationModel): string {
|
|
|
27
27
|
}
|
|
28
28
|
return (
|
|
29
29
|
readConfObject(config, 'name') ||
|
|
30
|
-
`Reference sequence (${
|
|
30
|
+
`Reference sequence (${
|
|
31
|
+
readConfObject(getParent(config), 'displayName') ||
|
|
32
|
+
readConfObject(getParent(config), 'name')
|
|
33
|
+
})`
|
|
31
34
|
)
|
|
32
35
|
}
|
|
33
36
|
|