@jbrowse/plugin-data-management 2.1.0 → 2.1.3

package/dist/AddConnectionWidget/components/AddConnectionWidget.js

@@ -22,36 +22,20 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
-var __read = (this && this.__read) || function (o, n) {
-    var m = typeof Symbol === "function" && o[Symbol.iterator];
-    if (!m) return o;
-    var i = m.call(o), r, ar = [], e;
-    try {
-        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
-    }
-    catch (error) { e = { error: error }; }
-    finally {
-        try {
-            if (r && !r.done && (m = i["return"])) m.call(i);
-        }
-        finally { if (e) throw e.error; }
-    }
-    return ar;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importStar(require("react"));
-var util_1 = require("@jbrowse/core/util");
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
-var mobx_react_1 = require("mobx-react");
-var mobx_state_tree_1 = require("mobx-state-tree");
+const react_1 = __importStar(require("react"));
+const util_1 = require("@jbrowse/core/util");
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const mobx_react_1 = require("mobx-react");
+const mobx_state_tree_1 = require("mobx-state-tree");
 // locals
-var ConfigureConnection_1 = __importDefault(require("./ConfigureConnection"));
-var ConnectionTypeSelect_1 = __importDefault(require("./ConnectionTypeSelect"));
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+const ConfigureConnection_1 = __importDefault(require("./ConfigureConnection"));
+const ConnectionTypeSelect_1 = __importDefault(require("./ConnectionTypeSelect"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     root: {
         marginTop: theme.spacing(1),
     },
@@ -65,21 +49,20 @@ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
     actionsContainer: {
         marginBottom: theme.spacing(2),
     },
-}); });
-var steps = ['Select a Connection Type', 'Configure Connection'];
-function AddConnectionWidget(_a) {
-    var model = _a.model;
-    var _b = __read((0, react_1.useState)({}), 2), connectionType = _b[0], setConnectionType = _b[1];
-    var _c = __read((0, react_1.useState)({}), 2), configModel = _c[0], setConfigModel = _c[1];
-    var _d = __read((0, react_1.useState)(true), 2), configModelReady = _d[0], setConfigModelReady = _d[1];
-    var _e = __read((0, react_1.useState)(0), 2), activeStep = _e[0], setActiveStep = _e[1];
-    var classes = useStyles().classes;
-    var session = (0, util_1.getSession)(model);
-    var pluginManager = (0, mobx_state_tree_1.getEnv)(session).pluginManager;
+}));
+const steps = ['Select a Connection Type', 'Configure Connection'];
+function AddConnectionWidget({ model }) {
+    const [connectionType, setConnectionType] = (0, react_1.useState)({});
+    const [configModel, setConfigModel] = (0, react_1.useState)({});
+    const [configModelReady, setConfigModelReady] = (0, react_1.useState)(true);
+    const [activeStep, setActiveStep] = (0, react_1.useState)(0);
+    const { classes } = useStyles();
+    const session = (0, util_1.getSession)(model);
+    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(session);
     function handleSetConnectionType(newConnectionType) {
         setConnectionType(newConnectionType);
         setConfigModel(newConnectionType.configSchema.create({
-            connectionId: "".concat(newConnectionType.name, "-").concat(Date.now()),
+            connectionId: `${newConnectionType.name}-${Date.now()}`,
         }, (0, mobx_state_tree_1.getEnv)(model)));
     }
     function stepContent() {
@@ -104,7 +87,7 @@ function AddConnectionWidget(_a) {
         setActiveStep(activeStep - 1);
     }
     function handleFinish() {
-        var connectionConf = session.addConnectionConf(configModel);
+        const connectionConf = session.addConnectionConf(configModel);
         session.makeConnection(connectionConf);
         session.hideWidget(model);
     }
@@ -116,13 +99,13 @@ function AddConnectionWidget(_a) {
         return false;
     }
     return (react_1.default.createElement("div", { className: classes.root },
-        react_1.default.createElement(material_1.Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map(function (label) { return (react_1.default.createElement(material_1.Step, { key: label },
+        react_1.default.createElement(material_1.Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map(label => (react_1.default.createElement(material_1.Step, { key: label },
             react_1.default.createElement(material_1.StepLabel, null, label),
             react_1.default.createElement(material_1.StepContent, null,
                 stepContent(),
                 react_1.default.createElement("div", { className: classes.actionsContainer },
                     react_1.default.createElement(material_1.Button, { disabled: activeStep === 0, onClick: handleBack, className: classes.button }, "Back"),
-                    react_1.default.createElement(material_1.Button, { disabled: !checkNextEnabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addConnectionNext" }, activeStep === steps.length - 1 ? 'Connect' : 'Next'))))); }))));
+                    react_1.default.createElement(material_1.Button, { disabled: !checkNextEnabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addConnectionNext" }, activeStep === steps.length - 1 ? 'Connect' : 'Next')))))))));
 }
 AddConnectionWidget.propTypes = {
     model: mobx_react_1.PropTypes.observableObject.isRequired,

package/dist/AddConnectionWidget/components/AddConnectionWidget.js.map

@@ -1 +1 @@
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package/dist/AddConnectionWidget/components/ConfigureConnection.js

@@ -23,12 +23,12 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importStar(require("react"));
-var plugin_config_1 = require("@jbrowse/plugin-config");
-var mobx_react_1 = require("mobx-react");
-var ConfigureConnection = (0, mobx_react_1.observer)(function (props) {
-    var connectionType = props.connectionType, model = props.model, setModelReady = props.setModelReady;
-    var ConfigEditorComponent = connectionType.configEditorComponent || plugin_config_1.ConfigurationEditor;
+const react_1 = __importStar(require("react"));
+const plugin_config_1 = require("@jbrowse/plugin-config");
+const mobx_react_1 = require("mobx-react");
+const ConfigureConnection = (0, mobx_react_1.observer)(props => {
+    const { connectionType, model, setModelReady } = props;
+    const ConfigEditorComponent = connectionType.configEditorComponent || plugin_config_1.ConfigurationEditor;
     return (react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null, "Loading...") },
         react_1.default.createElement(ConfigEditorComponent, { model: { target: model }, setModelReady: setModelReady })));
 });

package/dist/AddConnectionWidget/components/ConfigureConnection.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ConfigureConnection.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConfigureConnection.js"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,0DAA4D;AAC5D,2CAAqC;AAErC,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAAC,KAAK,CAAC,EAAE;IAC3C,MAAM,EAAE,cAAc,EAAE,KAAK,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IACtD,MAAM,qBAAqB,GACzB,cAAc,CAAC,qBAAqB,IAAI,mCAAmB,CAAA;IAE7D,OAAO,CACL,8BAAC,gBAAQ,IAAC,QAAQ,EAAE,wDAAqB;QACvC,8BAAC,qBAAqB,IACpB,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,EACxB,aAAa,EAAE,aAAa,GAC5B,CACO,CACZ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,mBAAmB,CAAA"}

package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js

@@ -26,20 +26,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importStar(require("react"));
-var material_1 = require("@mui/material");
-var OpenInNew_1 = __importDefault(require("@mui/icons-material/OpenInNew"));
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const OpenInNew_1 = __importDefault(require("@mui/icons-material/OpenInNew"));
 function ConnectionTypeSelect(props) {
-    var connectionTypeChoices = props.connectionTypeChoices, connectionType = props.connectionType, setConnectionType = props.setConnectionType;
-    (0, react_1.useEffect)(function () {
+    const { connectionTypeChoices, connectionType, setConnectionType } = props;
+    (0, react_1.useEffect)(() => {
         if (!connectionType.name) {
             setConnectionType(connectionTypeChoices[0]);
         }
     });
     function handleChange(event) {
-        setConnectionType(connectionTypeChoices.find(function (connectionTypeChoice) {
-            return connectionTypeChoice.name === event.target.value;
-        }));
+        setConnectionType(connectionTypeChoices.find((connectionTypeChoice) => connectionTypeChoice.name === event.target.value));
     }
     if (!connectionType.name) {
         return null;
@@ -48,7 +46,7 @@ function ConnectionTypeSelect(props) {
         react_1.default.createElement(material_1.TextField, { value: connectionType.name, label: "connectionType", helperText: connectionType.description ? (react_1.default.createElement(react_1.default.Fragment, null,
                 connectionType.description,
                 connectionType.url ? (react_1.default.createElement(material_1.IconButton, { href: connectionType.url, rel: "noopener noreferrer", target: "_blank", color: "secondary" },
-                    react_1.default.createElement(OpenInNew_1.default, null))) : null)) : null, select: true, fullWidth: true, onChange: handleChange, variant: "outlined" }, connectionTypeChoices.map(function (connectionTypeChoice) { return (react_1.default.createElement(material_1.MenuItem, { key: connectionTypeChoice.name, value: connectionTypeChoice.name }, connectionTypeChoice.displayName || connectionTypeChoice.name)); }))));
+                    react_1.default.createElement(OpenInNew_1.default, null))) : null)) : null, select: true, fullWidth: true, onChange: handleChange, variant: "outlined" }, connectionTypeChoices.map((connectionTypeChoice) => (react_1.default.createElement(material_1.MenuItem, { key: connectionTypeChoice.name, value: connectionTypeChoice.name }, connectionTypeChoice.displayName || connectionTypeChoice.name))))));
 }
 exports.default = ConnectionTypeSelect;
 //# sourceMappingURL=ConnectionTypeSelect.js.map

package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ConnectionTypeSelect.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConnectionTypeSelect.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAwC;AACxC,4CAA+D;AAC/D,8EAAyD;AAIzD,SAAS,oBAAoB,CAAC,KAI7B;IACC,MAAM,EAAE,qBAAqB,EAAE,cAAc,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAE1E,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,CAAC,cAAc,CAAC,IAAI,EAAE;YACxB,iBAAiB,CAAC,qBAAqB,CAAC,CAAC,CAAC,CAAC,CAAA;SAC5C;IACH,CAAC,CAAC,CAAA;IAEF,SAAS,YAAY,CACnB,KAA2D;QAE3D,iBAAiB,CACf,qBAAqB,CAAC,IAAI,CACxB,CAAC,oBAAoC,EAAE,EAAE,CACvC,oBAAoB,CAAC,IAAI,KAAK,KAAK,CAAC,MAAM,CAAC,KAAK,CACnD,CACF,CAAA;IACH,CAAC;IACD,IAAI,CAAC,cAAc,CAAC,IAAI,EAAE;QACxB,OAAO,IAAI,CAAA;KACZ;IACD,OAAO,CACL,wCAAM,YAAY,EAAC,KAAK;QACtB,8BAAC,oBAAS,IACR,KAAK,EAAE,cAAc,CAAC,IAAI,EAC1B,KAAK,EAAC,gBAAgB,EACtB,UAAU,EACR,cAAc,CAAC,WAAW,CAAC,CAAC,CAAC,CAC3B;gBACG,cAAc,CAAC,WAAW;gBAC1B,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,CACpB,8BAAC,qBAAU,IACT,IAAI,EAAE,cAAc,CAAC,GAAG,EACxB,GAAG,EAAC,qBAAqB,EACzB,MAAM,EAAC,QAAQ,EACf,KAAK,EAAC,WAAW;oBAEjB,8BAAC,mBAAa,OAAG,CACN,CACd,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAC,CAAC,CAAC,IAAI,EAEV,MAAM,QACN,SAAS,QACT,QAAQ,EAAE,YAAY,EACtB,OAAO,EAAC,UAAU,IAEjB,qBAAqB,CAAC,GAAG,CAAC,CAAC,oBAAoC,EAAE,EAAE,CAAC,CACnE,8BAAC,mBAAQ,IACP,GAAG,EAAE,oBAAoB,CAAC,IAAI,EAC9B,KAAK,EAAE,oBAAoB,CAAC,IAAI,IAE/B,oBAAoB,CAAC,WAAW,IAAI,oBAAoB,CAAC,IAAI,CACrD,CACZ,CAAC,CACQ,CACP,CACR,CAAA;AACH,CAAC;AAED,kBAAe,oBAAoB,CAAA"}

package/dist/AddConnectionWidget/index.js

@@ -4,7 +4,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.configSchema = exports.stateModel = void 0;
-var configuration_1 = require("@jbrowse/core/configuration");
+const configuration_1 = require("@jbrowse/core/configuration");
 var model_1 = require("./model");
 Object.defineProperty(exports, "stateModel", { enumerable: true, get: function () { return __importDefault(model_1).default; } });
 exports.configSchema = (0, configuration_1.ConfigurationSchema)('AddConnectionWidget', {});

package/dist/AddConnectionWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/index.js"],"names":[],"mappings":";;;;;;AAAA,6DAAiE;AAEjE,iCAA+C;AAAtC,oHAAA,OAAO,OAAc;AACjB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,qBAAqB,EAAE,EAAE,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/index.js"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAA+C;AAAtC,oHAAA,OAAO,OAAc;AACjB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,qBAAqB,EAAE,EAAE,CAAC,CAAA"}

package/dist/AddConnectionWidget/model.js

@@ -1,7 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-var mobx_state_tree_1 = require("mobx-state-tree");
-var mst_1 = require("@jbrowse/core/util/types/mst");
+const mobx_state_tree_1 = require("mobx-state-tree");
+const mst_1 = require("@jbrowse/core/util/types/mst");
 exports.default = mobx_state_tree_1.types.model('AddConnectionModel', {
     id: mst_1.ElementId,
     type: mobx_state_tree_1.types.literal('AddConnectionWidget'),

package/dist/AddConnectionWidget/model.js.map

@@ -1 +1 @@
-{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/model.js"],"names":[],"mappings":";;AAAA,mDAAuC;AACvC,oDAAwD;AAExD,kBAAe,uBAAK,CAAC,KAAK,CAAC,oBAAoB,EAAE;IAC/C,EAAE,EAAE,eAAS;IACb,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,qBAAqB,CAAC;CAC3C,CAAC,CAAA"}
+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/model.js"],"names":[],"mappings":";;AAAA,qDAAuC;AACvC,sDAAwD;AAExD,kBAAe,uBAAK,CAAC,KAAK,CAAC,oBAAoB,EAAE;IAC/C,EAAE,EAAE,eAAS;IACb,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,qBAAqB,CAAC;CAC3C,CAAC,CAAA"}

package/dist/AddTrackWidget/components/AddTrackWidget.js

@@ -1,53 +1,28 @@
 "use strict";
-var __assign = (this && this.__assign) || function () {
-    __assign = Object.assign || function(t) {
-        for (var s, i = 1, n = arguments.length; i < n; i++) {
-            s = arguments[i];
-            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
-                t[p] = s[p];
-        }
-        return t;
-    };
-    return __assign.apply(this, arguments);
-};
-var __read = (this && this.__read) || function (o, n) {
-    var m = typeof Symbol === "function" && o[Symbol.iterator];
-    if (!m) return o;
-    var i = m.call(o), r, ar = [], e;
-    try {
-        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
-    }
-    catch (error) { e = { error: error }; }
-    finally {
-        try {
-            if (r && !r.done && (m = i["return"])) m.call(i);
-        }
-        finally { if (e) throw e.error; }
-    }
-    return ar;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importDefault(require("react"));
-var mobx_react_1 = require("mobx-react");
-var material_1 = require("@mui/material");
-var util_1 = require("@jbrowse/core/util");
-var mobx_state_tree_1 = require("mobx-state-tree");
-var DefaultAddTrackWorkflow_1 = __importDefault(require("./DefaultAddTrackWorkflow"));
-function AddTrackSelector(_a) {
-    var model = _a.model;
-    var _b = __read((0, util_1.useLocalStorage)('trackSelector-choice', 'Default'), 2), val = _b[0], setVal = _b[1];
-    var pluginManager = (0, mobx_state_tree_1.getEnv)(model).pluginManager;
-    var widgets = pluginManager.getElementTypesInGroup('add track workflow');
-    var ComponentMap = __assign({ Default: DefaultAddTrackWorkflow_1.default }, Object.fromEntries(widgets.map(function (w) { return [w.name, w.ReactComponent]; })));
+const react_1 = __importDefault(require("react"));
+const mobx_react_1 = require("mobx-react");
+const material_1 = require("@mui/material");
+const util_1 = require("@jbrowse/core/util");
+const mobx_state_tree_1 = require("mobx-state-tree");
+const DefaultAddTrackWorkflow_1 = __importDefault(require("./DefaultAddTrackWorkflow"));
+function AddTrackSelector({ model }) {
+    const [val, setVal] = (0, util_1.useLocalStorage)('trackSelector-choice', 'Default');
+    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(model);
+    const widgets = pluginManager.getElementTypesInGroup('add track workflow');
+    const ComponentMap = {
+        Default: DefaultAddTrackWorkflow_1.default,
+        ...Object.fromEntries(widgets.map(w => [w.name, w.ReactComponent])),
+    };
     // make sure the selected value is in the list
-    var val2 = ComponentMap[val] ? val : 'Default';
-    var Component = ComponentMap[val2];
+    const val2 = ComponentMap[val] ? val : 'Default';
+    const Component = ComponentMap[val2];
     return (react_1.default.createElement(react_1.default.Fragment, null,
         react_1.default.createElement(material_1.FormControl, null,
-            react_1.default.createElement(material_1.Select, { value: val2, onChange: function (event) { return setVal(event.target.value); } }, Object.keys(ComponentMap).map(function (e) { return (react_1.default.createElement(material_1.MenuItem, { key: e, value: e }, e)); })),
+            react_1.default.createElement(material_1.Select, { value: val2, onChange: event => setVal(event.target.value) }, Object.keys(ComponentMap).map(e => (react_1.default.createElement(material_1.MenuItem, { key: e, value: e }, e)))),
             react_1.default.createElement(material_1.FormHelperText, null, "Type of add track workflow")),
         react_1.default.createElement("br", null),
         react_1.default.createElement(Component, { model: model })));

package/dist/AddTrackWidget/components/AddTrackWidget.js.map

@@ -1 +1 @@
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