@jbrowse/plugin-data-management 1.7.11 → 2.1.0

package/dist/AddTrackWidget/model.js

@@ -1,177 +1,153 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = f;
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _mst = require("@jbrowse/core/util/types/mst");
-
-var _tracks = require("@jbrowse/core/util/tracks");
-
-function isAbsoluteUrl() {
-  var url = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : '';
-
-  try {
-    new URL(url);
-    return true;
-  } catch (error) {
-    return url.startsWith('/');
-  }
+Object.defineProperty(exports, "__esModule", { value: true });
+var mobx_state_tree_1 = require("mobx-state-tree");
+var mst_1 = require("@jbrowse/core/util/types/mst");
+var tracks_1 = require("@jbrowse/core/util/tracks");
+function isAbsoluteUrl(url) {
+    if (url === void 0) { url = ''; }
+    try {
+        new URL(url);
+        return true;
+    }
+    catch (error) {
+        return url.startsWith('/');
+    }
 }
-
 function f(pluginManager) {
-  return _mobxStateTree.types.model('AddTrackModel', {
-    id: _mst.ElementId,
-    type: _mobxStateTree.types.literal('AddTrackWidget'),
-    view: _mobxStateTree.types.safeReference(pluginManager.pluggableMstType('view', 'stateModel'))
-  }).volatile(function () {
-    return {
-      trackSource: 'fromFile',
-      trackData: undefined,
-      indexTrackData: undefined,
-      // alts
-      altAssemblyName: '',
-      altTrackName: '',
-      altTrackType: '',
-      adapterHint: '',
-      textIndexTrack: true,
-      textIndexingConf: undefined
-    };
-  }).actions(function (self) {
-    return {
-      setAdapterHint: function setAdapterHint(obj) {
-        self.adapterHint = obj;
-      },
-      setTrackSource: function setTrackSource(str) {
-        self.trackSource = str;
-      },
-      setTextIndexingConf: function setTextIndexingConf(conf) {
-        self.textIndexingConf = conf;
-      },
-      setTextIndexTrack: function setTextIndexTrack(flag) {
-        self.textIndexTrack = flag;
-      },
-      setTrackData: function setTrackData(obj) {
-        self.trackData = obj;
-      },
-      setIndexTrackData: function setIndexTrackData(obj) {
-        self.indexTrackData = obj;
-      },
-      setAssembly: function setAssembly(str) {
-        self.altAssemblyName = str;
-      },
-      setTrackName: function setTrackName(str) {
-        self.altTrackName = str;
-      },
-      setTrackType: function setTrackType(str) {
-        self.altTrackType = str;
-      },
-      clearData: function clearData() {
-        self.trackSource = '';
-        self.altTrackName = '';
-        self.altTrackType = '';
-        self.altAssemblyName = '';
-        self.adapterHint = '';
-        self.indexTrackData = undefined;
-        self.trackData = undefined;
-        self.textIndexingConf = undefined;
-        self.textIndexTrack = true;
-      }
-    };
-  }).views(function (self) {
-    return {
-      get trackAdapter() {
-        var trackData = self.trackData,
-            indexTrackData = self.indexTrackData,
-            adapterHint = self.adapterHint;
-        return trackData ? (0, _tracks.guessAdapter)(trackData, indexTrackData, adapterHint, self) : undefined;
-      },
-
-      get trackName() {
-        return self.altTrackName || (self.trackData ? (0, _tracks.getFileName)(self.trackData) : '');
-      },
-
-      get isFtp() {
-        var _index$uri, _track$uri;
-
-        var track = self.trackData,
-            index = self.indexTrackData;
-        return !!( // @ts-ignore
-        index !== null && index !== void 0 && (_index$uri = index.uri) !== null && _index$uri !== void 0 && _index$uri.startsWith('ftp://') || track !== null && track !== void 0 && (_track$uri = track.uri) !== null && _track$uri !== void 0 && _track$uri.startsWith('ftp://'));
-      },
-
-      get isRelativeTrackUrl() {
-        var _self$trackData;
-
-        // @ts-ignore
-        var uri = (_self$trackData = self.trackData) === null || _self$trackData === void 0 ? void 0 : _self$trackData.uri;
-        return uri ? !isAbsoluteUrl(uri) : false;
-      },
-
-      get isRelativeIndexUrl() {
-        var _self$indexTrackData;
-
-        // @ts-ignore
-        var uri = (_self$indexTrackData = self.indexTrackData) === null || _self$indexTrackData === void 0 ? void 0 : _self$indexTrackData.uri;
-        return uri ? !isAbsoluteUrl(uri) : false;
-      },
-
-      get isRelativeUrl() {
-        return this.isRelativeIndexUrl || this.isRelativeTrackUrl;
-      },
-
-      get trackHttp() {
-        var _self$trackData2, _self$trackData2$uri;
-
-        // @ts-ignore
-        return (_self$trackData2 = self.trackData) === null || _self$trackData2 === void 0 ? void 0 : (_self$trackData2$uri = _self$trackData2.uri) === null || _self$trackData2$uri === void 0 ? void 0 : _self$trackData2$uri.startsWith('http://');
-      },
-
-      get indexHttp() {
-        var _self$indexTrackData2, _self$indexTrackData3;
-
-        // @ts-ignore
-        return (_self$indexTrackData2 = self.indexTrackData) === null || _self$indexTrackData2 === void 0 ? void 0 : (_self$indexTrackData3 = _self$indexTrackData2.uri) === null || _self$indexTrackData3 === void 0 ? void 0 : _self$indexTrackData3.startsWith('http://');
-      },
-
-      get wrongProtocol() {
-        return window.location.protocol === 'https:' && (this.trackHttp || this.indexHttp);
-      },
-
-      get unsupported() {
-        var _this$trackAdapter;
-
-        return ((_this$trackAdapter = this.trackAdapter) === null || _this$trackAdapter === void 0 ? void 0 : _this$trackAdapter.type) === _tracks.UNSUPPORTED;
-      },
-
-      get assembly() {
-        var _self$view$assemblyNa;
-
-        return self.altAssemblyName || ((_self$view$assemblyNa = self.view.assemblyNames) === null || _self$view$assemblyNa === void 0 ? void 0 : _self$view$assemblyNa[0]);
-      },
-
-      get trackType() {
-        return self.altTrackType || (this.trackAdapter ? (0, _tracks.guessTrackType)(this.trackAdapter.type, self) : '');
-      }
-
-    };
-  }).views(function (self) {
-    return {
-      get warningMessage() {
-        if (self.isFtp) {
-          return "Warning: JBrowse cannot access files using the ftp protocol";
-        } else if (self.isRelativeUrl) {
-          return "Warning: one or more of your files do not provide the protocol e.g.\n          https://, please provide an absolute URL unless you are sure a\n          relative URL is intended.";
-        } else if (self.wrongProtocol) {
-          return "Warning: You entered a http:// resources but we cannot access HTTP\n          resources from JBrowse when it is running on https. Please use an\n          https URL for your track, or access the JBrowse app from the http\n          protocol";
-        }
-
-        return '';
-      }
-
-    };
-  });
-}
+    return mobx_state_tree_1.types
+        .model('AddTrackModel', {
+        id: mst_1.ElementId,
+        type: mobx_state_tree_1.types.literal('AddTrackWidget'),
+        view: mobx_state_tree_1.types.safeReference(pluginManager.pluggableMstType('view', 'stateModel')),
+    })
+        .volatile(function () { return ({
+        trackSource: 'fromFile',
+        trackData: undefined,
+        indexTrackData: undefined,
+        // alts
+        altAssemblyName: '',
+        altTrackName: '',
+        altTrackType: '',
+        adapterHint: '',
+        textIndexTrack: true,
+        textIndexingConf: undefined,
+    }); })
+        .actions(function (self) { return ({
+        setAdapterHint: function (obj) {
+            self.adapterHint = obj;
+        },
+        setTrackSource: function (str) {
+            self.trackSource = str;
+        },
+        setTextIndexingConf: function (conf) {
+            self.textIndexingConf = conf;
+        },
+        setTextIndexTrack: function (flag) {
+            self.textIndexTrack = flag;
+        },
+        setTrackData: function (obj) {
+            self.trackData = obj;
+        },
+        setIndexTrackData: function (obj) {
+            self.indexTrackData = obj;
+        },
+        setAssembly: function (str) {
+            self.altAssemblyName = str;
+        },
+        setTrackName: function (str) {
+            self.altTrackName = str;
+        },
+        setTrackType: function (str) {
+            self.altTrackType = str;
+        },
+        clearData: function () {
+            self.trackSource = '';
+            self.altTrackName = '';
+            self.altTrackType = '';
+            self.altAssemblyName = '';
+            self.adapterHint = '';
+            self.indexTrackData = undefined;
+            self.trackData = undefined;
+            self.textIndexingConf = undefined;
+            self.textIndexTrack = true;
+        },
+    }); })
+        .views(function (self) { return ({
+        get trackAdapter() {
+            var trackData = self.trackData, indexTrackData = self.indexTrackData, adapterHint = self.adapterHint;
+            return trackData
+                ? (0, tracks_1.guessAdapter)(trackData, indexTrackData, adapterHint, self)
+                : undefined;
+        },
+        get trackName() {
+            return (self.altTrackName ||
+                (self.trackData ? (0, tracks_1.getFileName)(self.trackData) : ''));
+        },
+        get isFtp() {
+            var _a, _b;
+            var track = self.trackData, index = self.indexTrackData;
+            return !!(
+            // @ts-ignore
+            (((_a = index === null || index === void 0 ? void 0 : index.uri) === null || _a === void 0 ? void 0 : _a.startsWith('ftp://')) || ((_b = track === null || track === void 0 ? void 0 : track.uri) === null || _b === void 0 ? void 0 : _b.startsWith('ftp://'))));
+        },
+        get isRelativeTrackUrl() {
+            var _a;
+            // @ts-ignore
+            var uri = (_a = self.trackData) === null || _a === void 0 ? void 0 : _a.uri;
+            return uri ? !isAbsoluteUrl(uri) : false;
+        },
+        get isRelativeIndexUrl() {
+            var _a;
+            // @ts-ignore
+            var uri = (_a = self.indexTrackData) === null || _a === void 0 ? void 0 : _a.uri;
+            return uri ? !isAbsoluteUrl(uri) : false;
+        },
+        get isRelativeUrl() {
+            return this.isRelativeIndexUrl || this.isRelativeTrackUrl;
+        },
+        get trackHttp() {
+            var _a, _b;
+            // @ts-ignore
+            return (_b = (_a = self.trackData) === null || _a === void 0 ? void 0 : _a.uri) === null || _b === void 0 ? void 0 : _b.startsWith('http://');
+        },
+        get indexHttp() {
+            var _a, _b;
+            // @ts-ignore
+            return (_b = (_a = self.indexTrackData) === null || _a === void 0 ? void 0 : _a.uri) === null || _b === void 0 ? void 0 : _b.startsWith('http://');
+        },
+        get wrongProtocol() {
+            return (window.location.protocol === 'https:' &&
+                (this.trackHttp || this.indexHttp));
+        },
+        get unsupported() {
+            var _a;
+            return ((_a = this.trackAdapter) === null || _a === void 0 ? void 0 : _a.type) === tracks_1.UNSUPPORTED;
+        },
+        get assembly() {
+            var _a;
+            return self.altAssemblyName || ((_a = self.view.assemblyNames) === null || _a === void 0 ? void 0 : _a[0]);
+        },
+        get trackType() {
+            return (self.altTrackType ||
+                (this.trackAdapter
+                    ? (0, tracks_1.guessTrackType)(this.trackAdapter.type, self)
+                    : ''));
+        },
+    }); })
+        .views(function (self) { return ({
+        get warningMessage() {
+            if (self.isFtp) {
+                return "Warning: JBrowse cannot access files using the ftp protocol";
+            }
+            else if (self.isRelativeUrl) {
+                return "Warning: one or more of your files do not provide the protocol e.g.\n          https://, please provide an absolute URL unless you are sure a\n          relative URL is intended.";
+            }
+            else if (self.wrongProtocol) {
+                return "Warning: You entered a http:// resources but we cannot access HTTP\n          resources from JBrowse when it is running on https. Please use an\n          https URL for your track, or access the JBrowse app from the http\n          protocol";
+            }
+            return '';
+        },
+    }); });
+}
+exports.default = f;
+//# sourceMappingURL=model.js.map

package/dist/AddTrackWidget/model.js.map

@@ -0,0 +1 @@
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