@jbrowse/plugin-data-management 1.7.11 → 2.0.0

package/dist/PluginStoreWidget/components/PluginStoreWidget.test.js

@@ -1,201 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _react = _interopRequireDefault(require("react"));
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _react2 = require("@testing-library/react");
-
-var _rootModel = require("@jbrowse/web/src/rootModel");
-
-var _PluginStoreWidget = _interopRequireDefault(require("./PluginStoreWidget"));
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-jest.mock('@jbrowse/web/src/makeWorkerInstance', function () {
-  return function () {};
-});
-var plugins = {
-  plugins: [{
-    name: 'MsaView',
-    authors: ['Colin Diesh'],
-    description: 'multiple sequence alignment browser plugin for JBrowse 2',
-    location: 'https://github.com/GMOD/jbrowse-plugin-msaview',
-    url: 'https://unpkg.com/jbrowse-plugin-msaview/dist/jbrowse-plugin-msaview.umd.production.min.js',
-    license: 'Apache License 2.0',
-    image: 'https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/msaview-screenshot-fs8.png'
-  }]
-};
-describe('<PluginStoreWidget />', function () {
-  var session;
-  var model;
-  beforeEach(function () {
-    session = (0, _rootModel.createTestSession)();
-    model = session.addWidget('PluginStoreWidget', 'pluginStoreWidget');
-    var _window = window,
-        location = _window.location;
-    delete window.location;
-    window.location = _objectSpread(_objectSpread({}, location), {}, {
-      reload: jest.fn()
-    });
-    fetch.resetMocks();
-    fetch.mockResponse(JSON.stringify(plugins));
-  });
-  afterEach(_react2.cleanup);
-  it('renders with the available plugins', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
-    var _render, container, findByText;
-
-    return _regenerator.default.wrap(function _callee$(_context) {
-      while (1) {
-        switch (_context.prev = _context.next) {
-          case 0:
-            _render = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_PluginStoreWidget.default, {
-              model: model
-            })), container = _render.container, findByText = _render.findByText;
-            _context.next = 3;
-            return findByText('multiple sequence alignment browser plugin for JBrowse 2');
-
-          case 3:
-            expect(container.firstChild).toMatchSnapshot();
-
-          case 4:
-          case "end":
-            return _context.stop();
-        }
-      }
-    }, _callee);
-  })));
-  it('Installs a session plugin', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
-    var _render2, findByText;
-
-    return _regenerator.default.wrap(function _callee2$(_context2) {
-      while (1) {
-        switch (_context2.prev = _context2.next) {
-          case 0:
-            _render2 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_PluginStoreWidget.default, {
-              model: model
-            })), findByText = _render2.findByText;
-            _context2.next = 3;
-            return findByText('multiple sequence alignment browser plugin for JBrowse 2');
-
-          case 3:
-            _context2.t0 = _react2.fireEvent;
-            _context2.next = 6;
-            return findByText('Install');
-
-          case 6:
-            _context2.t1 = _context2.sent;
-
-            _context2.t0.click.call(_context2.t0, _context2.t1);
-
-            _context2.next = 10;
-            return (0, _react2.waitFor)(function () {
-              expect(window.location.reload).toHaveBeenCalled();
-            });
-
-          case 10:
-            expect((0, _mobxStateTree.getSnapshot)(session.sessionPlugins)[0]).toEqual(plugins.plugins[0]);
-
-          case 11:
-          case "end":
-            return _context2.stop();
-        }
-      }
-    }, _callee2);
-  })));
-  it('plugin store admin - adds a custom plugin correctly', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
-    var _render3, findByText, getByText, getByLabelText;
-
-    return _regenerator.default.wrap(function _callee3$(_context3) {
-      while (1) {
-        switch (_context3.prev = _context3.next) {
-          case 0:
-            session = (0, _rootModel.createTestSession)({}, true);
-            model = session.addWidget('PluginStoreWidget', 'pluginStoreWidget');
-            _render3 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_PluginStoreWidget.default, {
-              model: model
-            })), findByText = _render3.findByText, getByText = _render3.getByText, getByLabelText = _render3.getByLabelText;
-            _context3.next = 5;
-            return findByText('multiple sequence alignment browser plugin for JBrowse 2');
-
-          case 5:
-            _react2.fireEvent.click(getByText('Add custom plugin'));
-
-            _react2.fireEvent.change(getByLabelText('Plugin URL'), {
-              target: {
-                value: 'https://unpkg.com/jbrowse-plugin-msaview/dist/jbrowse-plugin-msaview.esm.js'
-              }
-            });
-
-            _react2.fireEvent.change(getByLabelText('Plugin name'), {
-              target: {
-                value: 'MsaView'
-              }
-            });
-
-            _react2.fireEvent.click(getByText('Submit'));
-
-            _context3.next = 11;
-            return (0, _react2.waitFor)(function () {
-              expect(window.location.reload).toHaveBeenCalled();
-            });
-
-          case 11:
-            expect((0, _mobxStateTree.getSnapshot)((0, _mobxStateTree.getParent)(session)).jbrowse.plugins).toEqual([{
-              name: 'MsaView',
-              umdUrl: 'https://unpkg.com/jbrowse-plugin-msaview/dist/jbrowse-plugin-msaview.esm.js'
-            }]);
-
-          case 12:
-          case "end":
-            return _context3.stop();
-        }
-      }
-    }, _callee3);
-  })));
-  it('plugin store admin - removes a custom plugin correctly', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
-    var rootModel, jbrowse, _render4, findByText, getByText, getByTestId;
-
-    return _regenerator.default.wrap(function _callee4$(_context4) {
-      while (1) {
-        switch (_context4.prev = _context4.next) {
-          case 0:
-            session = (0, _rootModel.createTestSession)({}, true);
-            model = session.addWidget('PluginStoreWidget', 'pluginStoreWidget');
-            rootModel = (0, _mobxStateTree.getParent)(session);
-            jbrowse = rootModel.jbrowse;
-            jbrowse.addPlugin(plugins.plugins[0]);
-            _render4 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_PluginStoreWidget.default, {
-              model: model
-            })), findByText = _render4.findByText, getByText = _render4.getByText, getByTestId = _render4.getByTestId;
-            _context4.next = 8;
-            return findByText('multiple sequence alignment browser plugin for JBrowse 2');
-
-          case 8:
-            _react2.fireEvent.click(getByTestId('removePlugin-SVGPlugin'));
-
-            _react2.fireEvent.click(getByText('Confirm'));
-
-            _context4.next = 12;
-            return (0, _react2.waitFor)(function () {
-              expect(window.location.reload).toHaveBeenCalled();
-            });
-
-          case 12:
-          case "end":
-            return _context4.stop();
-        }
-      }
-    }, _callee4);
-  })));
-});

package/dist/PluginStoreWidget/model.test.js

@@ -1,17 +0,0 @@
-"use strict";
-
-var _rootModel = require("@jbrowse/web/src/rootModel");
-
-jest.mock('@jbrowse/web/src/makeWorkerInstance', function () {
-  return function () {};
-});
-describe('PluginStoreModel', function () {
-  it('filters plugins correctly', function () {
-    var session = (0, _rootModel.createTestSession)();
-    var model = session.addWidget('PluginStoreWidget', 'pluginStoreWidget');
-    model.setFilterText('Foo');
-    expect(model.filterText).toEqual('Foo');
-    model.clearFilterText();
-    expect(model.filterText).toEqual('');
-  });
-});

package/dist/SetDefaultSession/SetDefaultSession.test.js

@@ -1,75 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _react = _interopRequireDefault(require("react"));
-
-var _react2 = require("@testing-library/react");
-
-var _SetDefaultSession = _interopRequireDefault(require("./SetDefaultSession"));
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-var mockRootModel = {
-  jbrowse: {
-    assemblies: [{
-      name: 'testAssembly',
-      sequence: {
-        type: 'testSequenceTrack',
-        trackId: '',
-        adapter: {
-          type: 'testSeqAdapter',
-          twoBitLocation: {
-            uri: 'test.2bit',
-            locationType: 'UriLocation'
-          }
-        }
-      }
-    }],
-    setDefaultSessionConf: jest.fn()
-  },
-  session: {
-    savedSessions: [],
-    notify: jest.fn()
-  }
-};
-describe('SetDefaultSession GUI', function () {
-  it('closes when the return button is clicked', function () {
-    var onClose = jest.fn();
-
-    var _render = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_SetDefaultSession.default, {
-      rootModel: mockRootModel,
-      onClose: onClose
-    })),
-        getByText = _render.getByText;
-
-    _react2.fireEvent.click(getByText('Cancel'));
-
-    expect(onClose).toHaveBeenCalled();
-  });
-  it('unsets to the default session with reset button', function () {
-    var MockSession = _objectSpread(_objectSpread({}, mockRootModel), {}, {
-      session: _objectSpread(_objectSpread({}, mockRootModel.session), {}, {
-        name: "Moo session",
-        savedSessions: [],
-        notify: jest.fn()
-      })
-    });
-
-    var _render2 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_SetDefaultSession.default, {
-      rootModel: MockSession,
-      onClose: function onClose() {}
-    })),
-        getByText = _render2.getByText;
-
-    _react2.fireEvent.click(getByText('Clear default session'));
-
-    expect(MockSession.jbrowse.setDefaultSessionConf).toHaveBeenCalledWith({
-      name: "New session"
-    });
-  });
-});

package/dist/index.test.js

@@ -1,56 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _PluginManager = _interopRequireDefault(require("@jbrowse/core/PluginManager"));
-
-var _pluginConfig = _interopRequireDefault(require("@jbrowse/plugin-config"));
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _ = _interopRequireDefault(require("."));
-
-describe('Data management', function () {
-  var pluginManager;
-  beforeAll(function () {
-    var originalConsoleWarn = console.warn;
-    console.warn = jest.fn();
-    pluginManager = new _PluginManager.default([new _.default(), new _pluginConfig.default()]);
-    pluginManager.createPluggableElements();
-    pluginManager.configure();
-    console.warn = originalConsoleWarn;
-  });
-  it("won't add if already added", function () {
-    expect(function () {
-      return pluginManager.addPlugin(new _.default());
-    }).toThrow(/JBrowse already configured, cannot add plugins/);
-  });
-  it('adds track add widget', function () {
-    var AddTrackWidget = pluginManager.getWidgetType('AddTrackWidget');
-    var config = AddTrackWidget.configSchema.create({
-      type: 'AddTrackWidget'
-    });
-    expect((0, _mobxStateTree.getSnapshot)(config)).toMatchSnapshot();
-  });
-  it('adds config editor widget', function () {
-    var ConfigurationEditorWidget = pluginManager.getWidgetType('ConfigurationEditorWidget');
-    var config = ConfigurationEditorWidget.configSchema.create({
-      type: 'ConfigurationEditorWidget'
-    });
-    expect((0, _mobxStateTree.getSnapshot)(config)).toMatchSnapshot();
-  });
-  it('adds connection add widget', function () {
-    var AddConnectionWidget = pluginManager.getWidgetType('AddConnectionWidget');
-    var config = AddConnectionWidget.configSchema.create({
-      type: 'AddConnectionWidget'
-    });
-    expect((0, _mobxStateTree.getSnapshot)(config)).toMatchSnapshot();
-  });
-  it('adds hierarchical track selector', function () {
-    var HierarchicalTrackSelectorWidget = pluginManager.getWidgetType('HierarchicalTrackSelectorWidget');
-    var config = HierarchicalTrackSelectorWidget.configSchema.create({
-      type: 'HierarchicalTrackSelectorWidget'
-    });
-    expect((0, _mobxStateTree.getSnapshot)(config)).toMatchSnapshot();
-  });
-});