@jbrowse/plugin-data-management 1.6.7 → 1.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (66) hide show
  1. package/dist/AddConnectionWidget/components/AddConnectionWidget.js +178 -0
  2. package/dist/AddConnectionWidget/components/AddConnectionWidget.test.js +270 -0
  3. package/dist/AddConnectionWidget/components/ConfigureConnection.js +35 -0
  4. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +70 -0
  5. package/dist/AddConnectionWidget/index.js +21 -0
  6. package/dist/AddConnectionWidget/model.js +17 -0
  7. package/dist/AddTrackWidget/components/AddTrackWidget.js +215 -0
  8. package/dist/AddTrackWidget/components/AddTrackWidget.test.js +218 -0
  9. package/dist/AddTrackWidget/components/ConfirmTrack.js +277 -0
  10. package/dist/AddTrackWidget/components/TrackSourceSelect.js +60 -0
  11. package/dist/AddTrackWidget/index.js +21 -0
  12. package/dist/AddTrackWidget/index.test.js +291 -0
  13. package/dist/AddTrackWidget/model.js +167 -0
  14. package/dist/AssemblyManager/AssemblyAddForm.js +299 -0
  15. package/dist/AssemblyManager/AssemblyEditor.js +25 -0
  16. package/dist/AssemblyManager/AssemblyManager.js +144 -0
  17. package/dist/AssemblyManager/AssemblyManager.test.js +113 -0
  18. package/dist/AssemblyManager/AssemblyTable.js +92 -0
  19. package/dist/AssemblyManager/index.js +15 -0
  20. package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.js +55 -0
  21. package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.js +46 -0
  22. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +648 -0
  23. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.js +191 -0
  24. package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js +80 -0
  25. package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js +98 -0
  26. package/dist/HierarchicalTrackSelectorWidget/index.js +21 -0
  27. package/dist/HierarchicalTrackSelectorWidget/model.js +306 -0
  28. package/dist/HierarchicalTrackSelectorWidget/model.test.js +28 -0
  29. package/dist/PluginStoreWidget/components/CustomPluginForm.js +217 -0
  30. package/dist/PluginStoreWidget/components/InstalledPlugin.js +138 -0
  31. package/dist/PluginStoreWidget/components/InstalledPluginsList.js +47 -0
  32. package/dist/PluginStoreWidget/components/PluginCard.js +121 -0
  33. package/dist/PluginStoreWidget/components/PluginStoreWidget.js +240 -0
  34. package/dist/PluginStoreWidget/components/PluginStoreWidget.test.js +201 -0
  35. package/dist/PluginStoreWidget/index.js +29 -0
  36. package/dist/PluginStoreWidget/model.js +28 -0
  37. package/dist/PluginStoreWidget/model.test.js +17 -0
  38. package/dist/SetDefaultSession/SetDefaultSession.js +64 -0
  39. package/dist/SetDefaultSession/SetDefaultSession.test.js +75 -0
  40. package/dist/SetDefaultSession/index.js +15 -0
  41. package/dist/index.js +159 -6
  42. package/dist/index.test.js +56 -0
  43. package/dist/plugin-data-management.cjs.development.js +29 -23
  44. package/dist/plugin-data-management.cjs.development.js.map +1 -1
  45. package/dist/plugin-data-management.cjs.production.min.js +1 -1
  46. package/dist/plugin-data-management.cjs.production.min.js.map +1 -1
  47. package/dist/plugin-data-management.esm.js +29 -23
  48. package/dist/plugin-data-management.esm.js.map +1 -1
  49. package/dist/ucsc-trackhub/configSchema.js +30 -0
  50. package/dist/ucsc-trackhub/index.js +23 -0
  51. package/dist/ucsc-trackhub/model.js +130 -0
  52. package/dist/ucsc-trackhub/ucscAssemblies.js +13 -0
  53. package/dist/ucsc-trackhub/ucscTrackHub.js +503 -0
  54. package/package.json +3 -6
  55. package/src/AddConnectionWidget/components/AddConnectionWidget.test.js +1 -0
  56. package/src/AddTrackWidget/components/AddTrackWidget.test.js +1 -0
  57. package/src/AddTrackWidget/components/AddTrackWidget.tsx +1 -1
  58. package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +94 -89
  59. package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.js +1 -0
  60. package/src/HierarchicalTrackSelectorWidget/components/__snapshots__/HierarchicalTrackSelector.test.js.snap +2 -2
  61. package/src/PluginStoreWidget/components/CustomPluginForm.tsx +1 -1
  62. package/src/PluginStoreWidget/components/InstalledPlugin.tsx +4 -2
  63. package/src/PluginStoreWidget/components/PluginCard.tsx +4 -2
  64. package/src/PluginStoreWidget/components/PluginStoreWidget.test.js +1 -0
  65. package/src/PluginStoreWidget/model.test.js +1 -0
  66. package/src/SetDefaultSession/SetDefaultSession.tsx +4 -3
@@ -32,7 +32,7 @@ import ArrowDropDownIcon from '@material-ui/icons/ArrowDropDown';
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  import ArrowRightIcon from '@material-ui/icons/ArrowRight';
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  import MenuIcon from '@material-ui/icons/Menu';
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  import MoreIcon from '@material-ui/icons/MoreHoriz';
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- import PowerOutlinedIcon from '@material-ui/icons/PowerOutlined';
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+ import { Cable } from '@jbrowse/core/ui/Icons';
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  import AutoSizer from 'react-virtualized-auto-sizer';
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  import JBrowseMenu from '@jbrowse/core/ui/Menu';
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  import { VariableSizeTree } from 'react-vtree';
@@ -3366,7 +3366,7 @@ var useStyles$7 = /*#__PURE__*/makeStyles(function (theme) {
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  return {
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  searchBox: {
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- marginBottom: theme.spacing(2)
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+ margin: theme.spacing(2)
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  },
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  menuIcon: {
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  marginRight: theme.spacing(1),
@@ -3677,7 +3677,7 @@ var HierarchicalTrackSelectorContainer = /*#__PURE__*/observer(function (_ref5)
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  model: model,
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  toolbarHeight: toolbarHeight,
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  overrideDimensions: overrideDimensions
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- }), /*#__PURE__*/React.createElement(Fab, {
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+ }), session.addConnectionConf || session.addTrackConf ? /*#__PURE__*/React.createElement(React.Fragment, null, /*#__PURE__*/React.createElement(Fab, {
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  color: "secondary",
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  className: classes.fab,
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  onClick: function onClick(event) {
@@ -3689,13 +3689,13 @@ var HierarchicalTrackSelectorContainer = /*#__PURE__*/observer(function (_ref5)
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  onClose: function onClose() {
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  return setAnchorEl(null);
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  }
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- }, /*#__PURE__*/React.createElement(MenuItem, {
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+ }, session.addConnectionConf ? /*#__PURE__*/React.createElement(MenuItem, {
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  onClick: function onClick() {
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  handleFabClose();
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  var widget = session.addWidget('AddConnectionWidget', 'addConnectionWidget');
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  session.showWidget(widget);
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  }
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- }, "Add connection"), /*#__PURE__*/React.createElement(MenuItem, {
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+ }, "Add connection") : null, session.addTrackConf ? /*#__PURE__*/React.createElement(MenuItem, {
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  onClick: function onClick() {
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  handleFabClose();
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  var widget = session.addWidget('AddTrackWidget', 'addTrackWidget', {
@@ -3703,7 +3703,7 @@ var HierarchicalTrackSelectorContainer = /*#__PURE__*/observer(function (_ref5)
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  });
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  session.showWidget(widget);
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  }
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- }, "Add track")));
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+ }, "Add track") : null)) : null);
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  });
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  var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
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  var model = _ref6.model,
@@ -3780,12 +3780,23 @@ var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
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  onClick: function onClick() {
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  return setConnectionToggleOpen(true);
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  }
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- }, {
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- label: 'Delete connections...',
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- onClick: function onClick() {
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- return setConnectionManagerOpen(true);
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- }
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  }];
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+
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+ if (session.addConnectionConf) {
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+ connectionMenuItems.unshift({
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+ label: 'Add connection',
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+ onClick: function onClick() {
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+ session.showWidget(session.addWidget('AddConnectionWidget', 'addConnectionWidget'));
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+ }
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+ });
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+ connectionMenuItems.push({
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+ label: 'Delete connections...',
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+ onClick: function onClick() {
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+ return setConnectionManagerOpen(true);
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+ }
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+ });
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+ }
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+
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  var assemblyMenuItems = assemblyNames.length > 1 ? [{
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  label: 'Select assembly...',
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  subMenu: assemblyNames.map(function (name, idx) {
@@ -3814,17 +3825,17 @@ var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
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  style: {
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  display: 'flex'
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  }
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- }, /*#__PURE__*/React.createElement(IconButton, {
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+ }, session.addTrackConf && /*#__PURE__*/React.createElement(IconButton, {
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  className: classes.menuIcon,
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  onClick: function onClick(event) {
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  setMenuAnchorEl(event.currentTarget);
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  }
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- }, /*#__PURE__*/React.createElement(MenuIcon, null)), /*#__PURE__*/React.createElement(IconButton, {
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+ }, /*#__PURE__*/React.createElement(MenuIcon, null)), session.makeConnection && /*#__PURE__*/React.createElement(IconButton, {
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  className: classes.menuIcon,
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  onClick: function onClick(event) {
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  setConnectionAnchorEl(event.currentTarget);
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  }
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- }, /*#__PURE__*/React.createElement(PowerOutlinedIcon, null)), /*#__PURE__*/React.createElement(TextField, {
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+ }, /*#__PURE__*/React.createElement(Cable, null)), /*#__PURE__*/React.createElement(TextField, {
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  className: classes.searchBox,
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  label: "Filter tracks",
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  value: model.filterText,
@@ -3848,14 +3859,9 @@ var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
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  setConnectionAnchorEl(undefined);
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  },
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  onClose: function onClose() {
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- setConnectionAnchorEl(undefined);
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+ return setConnectionAnchorEl(undefined);
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  },
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- menuItems: [{
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- label: 'Add connection',
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- onClick: function onClick() {
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- session.showWidget(session.addWidget('AddConnectionWidget', 'addConnectionWidget'));
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- }
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- }].concat(connectionMenuItems)
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+ menuItems: connectionMenuItems
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  }), /*#__PURE__*/React.createElement(JBrowseMenu, {
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  anchorEl: menuAnchorEl,
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  open: Boolean(menuAnchorEl),
@@ -3864,7 +3870,7 @@ var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
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  setMenuAnchorEl(undefined);
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  },
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  onClose: function onClose() {
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- setMenuAnchorEl(undefined);
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+ return setMenuAnchorEl(undefined);
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  },
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  menuItems: menuItems
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  }), /*#__PURE__*/React.createElement(Suspense, {
@@ -3875,7 +3881,7 @@ var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
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  session: session
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  }) : deleteDialogDetails ? /*#__PURE__*/React.createElement(DeleteConnectionDialog, {
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  handleClose: function handleClose() {
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- setDeleteDialogDetails(undefined);
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+ return setDeleteDialogDetails(undefined);
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  },
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  deleteDialogDetails: deleteDialogDetails,
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  session: session