@jbrowse/plugin-data-management 1.6.7 → 1.7.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js +178 -0
- package/dist/AddConnectionWidget/components/AddConnectionWidget.test.js +270 -0
- package/dist/AddConnectionWidget/components/ConfigureConnection.js +35 -0
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +70 -0
- package/dist/AddConnectionWidget/index.js +21 -0
- package/dist/AddConnectionWidget/model.js +17 -0
- package/dist/AddTrackWidget/components/AddTrackWidget.js +215 -0
- package/dist/AddTrackWidget/components/AddTrackWidget.test.js +218 -0
- package/dist/AddTrackWidget/components/ConfirmTrack.js +277 -0
- package/dist/AddTrackWidget/components/TrackSourceSelect.js +60 -0
- package/dist/AddTrackWidget/index.js +21 -0
- package/dist/AddTrackWidget/index.test.js +291 -0
- package/dist/AddTrackWidget/model.js +167 -0
- package/dist/AssemblyManager/AssemblyAddForm.js +299 -0
- package/dist/AssemblyManager/AssemblyEditor.js +25 -0
- package/dist/AssemblyManager/AssemblyManager.js +144 -0
- package/dist/AssemblyManager/AssemblyManager.test.js +113 -0
- package/dist/AssemblyManager/AssemblyTable.js +92 -0
- package/dist/AssemblyManager/index.js +15 -0
- package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.js +55 -0
- package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.js +46 -0
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +648 -0
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.js +191 -0
- package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js +80 -0
- package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js +98 -0
- package/dist/HierarchicalTrackSelectorWidget/index.js +21 -0
- package/dist/HierarchicalTrackSelectorWidget/model.js +306 -0
- package/dist/HierarchicalTrackSelectorWidget/model.test.js +28 -0
- package/dist/PluginStoreWidget/components/CustomPluginForm.js +217 -0
- package/dist/PluginStoreWidget/components/InstalledPlugin.js +138 -0
- package/dist/PluginStoreWidget/components/InstalledPluginsList.js +47 -0
- package/dist/PluginStoreWidget/components/PluginCard.js +121 -0
- package/dist/PluginStoreWidget/components/PluginStoreWidget.js +240 -0
- package/dist/PluginStoreWidget/components/PluginStoreWidget.test.js +201 -0
- package/dist/PluginStoreWidget/index.js +29 -0
- package/dist/PluginStoreWidget/model.js +28 -0
- package/dist/PluginStoreWidget/model.test.js +17 -0
- package/dist/SetDefaultSession/SetDefaultSession.js +64 -0
- package/dist/SetDefaultSession/SetDefaultSession.test.js +75 -0
- package/dist/SetDefaultSession/index.js +15 -0
- package/dist/index.js +159 -6
- package/dist/index.test.js +56 -0
- package/dist/plugin-data-management.cjs.development.js +29 -23
- package/dist/plugin-data-management.cjs.development.js.map +1 -1
- package/dist/plugin-data-management.cjs.production.min.js +1 -1
- package/dist/plugin-data-management.cjs.production.min.js.map +1 -1
- package/dist/plugin-data-management.esm.js +29 -23
- package/dist/plugin-data-management.esm.js.map +1 -1
- package/dist/ucsc-trackhub/configSchema.js +30 -0
- package/dist/ucsc-trackhub/index.js +23 -0
- package/dist/ucsc-trackhub/model.js +130 -0
- package/dist/ucsc-trackhub/ucscAssemblies.js +13 -0
- package/dist/ucsc-trackhub/ucscTrackHub.js +503 -0
- package/package.json +3 -6
- package/src/AddConnectionWidget/components/AddConnectionWidget.test.js +1 -0
- package/src/AddTrackWidget/components/AddTrackWidget.test.js +1 -0
- package/src/AddTrackWidget/components/AddTrackWidget.tsx +1 -1
- package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +94 -89
- package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.js +1 -0
- package/src/HierarchicalTrackSelectorWidget/components/__snapshots__/HierarchicalTrackSelector.test.js.snap +2 -2
- package/src/PluginStoreWidget/components/CustomPluginForm.tsx +1 -1
- package/src/PluginStoreWidget/components/InstalledPlugin.tsx +4 -2
- package/src/PluginStoreWidget/components/PluginCard.tsx +4 -2
- package/src/PluginStoreWidget/components/PluginStoreWidget.test.js +1 -0
- package/src/PluginStoreWidget/model.test.js +1 -0
- package/src/SetDefaultSession/SetDefaultSession.tsx +4 -3
|
@@ -32,7 +32,7 @@ import ArrowDropDownIcon from '@material-ui/icons/ArrowDropDown';
|
|
|
32
32
|
import ArrowRightIcon from '@material-ui/icons/ArrowRight';
|
|
33
33
|
import MenuIcon from '@material-ui/icons/Menu';
|
|
34
34
|
import MoreIcon from '@material-ui/icons/MoreHoriz';
|
|
35
|
-
import
|
|
35
|
+
import { Cable } from '@jbrowse/core/ui/Icons';
|
|
36
36
|
import AutoSizer from 'react-virtualized-auto-sizer';
|
|
37
37
|
import JBrowseMenu from '@jbrowse/core/ui/Menu';
|
|
38
38
|
import { VariableSizeTree } from 'react-vtree';
|
|
@@ -3366,7 +3366,7 @@ var useStyles$7 = /*#__PURE__*/makeStyles(function (theme) {
|
|
|
3366
3366
|
|
|
3367
3367
|
return {
|
|
3368
3368
|
searchBox: {
|
|
3369
|
-
|
|
3369
|
+
margin: theme.spacing(2)
|
|
3370
3370
|
},
|
|
3371
3371
|
menuIcon: {
|
|
3372
3372
|
marginRight: theme.spacing(1),
|
|
@@ -3677,7 +3677,7 @@ var HierarchicalTrackSelectorContainer = /*#__PURE__*/observer(function (_ref5)
|
|
|
3677
3677
|
model: model,
|
|
3678
3678
|
toolbarHeight: toolbarHeight,
|
|
3679
3679
|
overrideDimensions: overrideDimensions
|
|
3680
|
-
}), /*#__PURE__*/React.createElement(Fab, {
|
|
3680
|
+
}), session.addConnectionConf || session.addTrackConf ? /*#__PURE__*/React.createElement(React.Fragment, null, /*#__PURE__*/React.createElement(Fab, {
|
|
3681
3681
|
color: "secondary",
|
|
3682
3682
|
className: classes.fab,
|
|
3683
3683
|
onClick: function onClick(event) {
|
|
@@ -3689,13 +3689,13 @@ var HierarchicalTrackSelectorContainer = /*#__PURE__*/observer(function (_ref5)
|
|
|
3689
3689
|
onClose: function onClose() {
|
|
3690
3690
|
return setAnchorEl(null);
|
|
3691
3691
|
}
|
|
3692
|
-
}, /*#__PURE__*/React.createElement(MenuItem, {
|
|
3692
|
+
}, session.addConnectionConf ? /*#__PURE__*/React.createElement(MenuItem, {
|
|
3693
3693
|
onClick: function onClick() {
|
|
3694
3694
|
handleFabClose();
|
|
3695
3695
|
var widget = session.addWidget('AddConnectionWidget', 'addConnectionWidget');
|
|
3696
3696
|
session.showWidget(widget);
|
|
3697
3697
|
}
|
|
3698
|
-
}, "Add connection"), /*#__PURE__*/React.createElement(MenuItem, {
|
|
3698
|
+
}, "Add connection") : null, session.addTrackConf ? /*#__PURE__*/React.createElement(MenuItem, {
|
|
3699
3699
|
onClick: function onClick() {
|
|
3700
3700
|
handleFabClose();
|
|
3701
3701
|
var widget = session.addWidget('AddTrackWidget', 'addTrackWidget', {
|
|
@@ -3703,7 +3703,7 @@ var HierarchicalTrackSelectorContainer = /*#__PURE__*/observer(function (_ref5)
|
|
|
3703
3703
|
});
|
|
3704
3704
|
session.showWidget(widget);
|
|
3705
3705
|
}
|
|
3706
|
-
}, "Add track")));
|
|
3706
|
+
}, "Add track") : null)) : null);
|
|
3707
3707
|
});
|
|
3708
3708
|
var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
|
|
3709
3709
|
var model = _ref6.model,
|
|
@@ -3780,12 +3780,23 @@ var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
|
|
|
3780
3780
|
onClick: function onClick() {
|
|
3781
3781
|
return setConnectionToggleOpen(true);
|
|
3782
3782
|
}
|
|
3783
|
-
}, {
|
|
3784
|
-
label: 'Delete connections...',
|
|
3785
|
-
onClick: function onClick() {
|
|
3786
|
-
return setConnectionManagerOpen(true);
|
|
3787
|
-
}
|
|
3788
3783
|
}];
|
|
3784
|
+
|
|
3785
|
+
if (session.addConnectionConf) {
|
|
3786
|
+
connectionMenuItems.unshift({
|
|
3787
|
+
label: 'Add connection',
|
|
3788
|
+
onClick: function onClick() {
|
|
3789
|
+
session.showWidget(session.addWidget('AddConnectionWidget', 'addConnectionWidget'));
|
|
3790
|
+
}
|
|
3791
|
+
});
|
|
3792
|
+
connectionMenuItems.push({
|
|
3793
|
+
label: 'Delete connections...',
|
|
3794
|
+
onClick: function onClick() {
|
|
3795
|
+
return setConnectionManagerOpen(true);
|
|
3796
|
+
}
|
|
3797
|
+
});
|
|
3798
|
+
}
|
|
3799
|
+
|
|
3789
3800
|
var assemblyMenuItems = assemblyNames.length > 1 ? [{
|
|
3790
3801
|
label: 'Select assembly...',
|
|
3791
3802
|
subMenu: assemblyNames.map(function (name, idx) {
|
|
@@ -3814,17 +3825,17 @@ var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
|
|
|
3814
3825
|
style: {
|
|
3815
3826
|
display: 'flex'
|
|
3816
3827
|
}
|
|
3817
|
-
}, /*#__PURE__*/React.createElement(IconButton, {
|
|
3828
|
+
}, session.addTrackConf && /*#__PURE__*/React.createElement(IconButton, {
|
|
3818
3829
|
className: classes.menuIcon,
|
|
3819
3830
|
onClick: function onClick(event) {
|
|
3820
3831
|
setMenuAnchorEl(event.currentTarget);
|
|
3821
3832
|
}
|
|
3822
|
-
}, /*#__PURE__*/React.createElement(MenuIcon, null)), /*#__PURE__*/React.createElement(IconButton, {
|
|
3833
|
+
}, /*#__PURE__*/React.createElement(MenuIcon, null)), session.makeConnection && /*#__PURE__*/React.createElement(IconButton, {
|
|
3823
3834
|
className: classes.menuIcon,
|
|
3824
3835
|
onClick: function onClick(event) {
|
|
3825
3836
|
setConnectionAnchorEl(event.currentTarget);
|
|
3826
3837
|
}
|
|
3827
|
-
}, /*#__PURE__*/React.createElement(
|
|
3838
|
+
}, /*#__PURE__*/React.createElement(Cable, null)), /*#__PURE__*/React.createElement(TextField, {
|
|
3828
3839
|
className: classes.searchBox,
|
|
3829
3840
|
label: "Filter tracks",
|
|
3830
3841
|
value: model.filterText,
|
|
@@ -3848,14 +3859,9 @@ var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
|
|
|
3848
3859
|
setConnectionAnchorEl(undefined);
|
|
3849
3860
|
},
|
|
3850
3861
|
onClose: function onClose() {
|
|
3851
|
-
setConnectionAnchorEl(undefined);
|
|
3862
|
+
return setConnectionAnchorEl(undefined);
|
|
3852
3863
|
},
|
|
3853
|
-
menuItems:
|
|
3854
|
-
label: 'Add connection',
|
|
3855
|
-
onClick: function onClick() {
|
|
3856
|
-
session.showWidget(session.addWidget('AddConnectionWidget', 'addConnectionWidget'));
|
|
3857
|
-
}
|
|
3858
|
-
}].concat(connectionMenuItems)
|
|
3864
|
+
menuItems: connectionMenuItems
|
|
3859
3865
|
}), /*#__PURE__*/React.createElement(JBrowseMenu, {
|
|
3860
3866
|
anchorEl: menuAnchorEl,
|
|
3861
3867
|
open: Boolean(menuAnchorEl),
|
|
@@ -3864,7 +3870,7 @@ var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
|
|
|
3864
3870
|
setMenuAnchorEl(undefined);
|
|
3865
3871
|
},
|
|
3866
3872
|
onClose: function onClose() {
|
|
3867
|
-
setMenuAnchorEl(undefined);
|
|
3873
|
+
return setMenuAnchorEl(undefined);
|
|
3868
3874
|
},
|
|
3869
3875
|
menuItems: menuItems
|
|
3870
3876
|
}), /*#__PURE__*/React.createElement(Suspense, {
|
|
@@ -3875,7 +3881,7 @@ var HierarchicalTrackSelectorHeader = /*#__PURE__*/observer(function (_ref6) {
|
|
|
3875
3881
|
session: session
|
|
3876
3882
|
}) : deleteDialogDetails ? /*#__PURE__*/React.createElement(DeleteConnectionDialog, {
|
|
3877
3883
|
handleClose: function handleClose() {
|
|
3878
|
-
setDeleteDialogDetails(undefined);
|
|
3884
|
+
return setDeleteDialogDetails(undefined);
|
|
3879
3885
|
},
|
|
3880
3886
|
deleteDialogDetails: deleteDialogDetails,
|
|
3881
3887
|
session: session
|