@jbrowse/plugin-data-management 1.5.3 → 1.5.7

package/dist/AssemblyManager/AssemblyTable.d.ts

@@ -1,7 +1,13 @@
 /// <reference types="react" />
+import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
 declare const AssemblyTable: ({ rootModel, setIsAssemblyBeingEdited, setAssemblyBeingEdited, }: {
-    rootModel: any;
+    rootModel: {
+        jbrowse: {
+            removeAssemblyConf: (arg: string) => void;
+            assemblies: AnyConfigurationModel[];
+        };
+    };
     setIsAssemblyBeingEdited(arg: boolean): void;
-    setAssemblyBeingEdited(arg: any): void;
+    setAssemblyBeingEdited(arg: AnyConfigurationModel): void;
 }) => JSX.Element;
 export default AssemblyTable;

package/dist/plugin-data-management.cjs.development.js

@@ -40,7 +40,6 @@ var core = require('@material-ui/core');
 var ExpandMoreIcon = _interopDefault(require('@material-ui/icons/ExpandMore'));
 var ClearIcon = _interopDefault(require('@material-ui/icons/Clear'));
 var InfoOutlinedIcon = _interopDefault(require('@material-ui/icons/InfoOutlined'));
-var styles = require('@material-ui/core/styles');
 var CloseIcon = _interopDefault(require('@material-ui/icons/Close'));
 var LockIcon = _interopDefault(require('@material-ui/icons/Lock'));
 var types = require('@jbrowse/core/util/types');
@@ -49,6 +48,7 @@ var AddIcon = _interopDefault(require('@material-ui/icons/Add'));
 var CheckIcon = _interopDefault(require('@material-ui/icons/Check'));
 var clsx = _interopDefault(require('clsx'));
 var IconButton = _interopDefault(require('@material-ui/core/IconButton'));
+var styles = require('@material-ui/core/styles');
 var ArrowBackIosIcon = _interopDefault(require('@material-ui/icons/ArrowBackIos'));
 var CreateIcon = _interopDefault(require('@material-ui/icons/Create'));
 var DeleteIcon = _interopDefault(require('@material-ui/icons/Delete'));
@@ -79,14 +79,9 @@ function ownKeys(object, enumerableOnly) {
 
   if (Object.getOwnPropertySymbols) {
     var symbols = Object.getOwnPropertySymbols(object);
-
-    if (enumerableOnly) {
-      symbols = symbols.filter(function (sym) {
-        return Object.getOwnPropertyDescriptor(object, sym).enumerable;
-      });
-    }
-
-    keys.push.apply(keys, symbols);
+    enumerableOnly && (symbols = symbols.filter(function (sym) {
+      return Object.getOwnPropertyDescriptor(object, sym).enumerable;
+    })), keys.push.apply(keys, symbols);
   }
 
   return keys;
@@ -94,19 +89,12 @@ function ownKeys(object, enumerableOnly) {
 
 function _objectSpread2(target) {
   for (var i = 1; i < arguments.length; i++) {
-    var source = arguments[i] != null ? arguments[i] : {};
-
-    if (i % 2) {
-      ownKeys(Object(source), true).forEach(function (key) {
-        _defineProperty(target, key, source[key]);
-      });
-    } else if (Object.getOwnPropertyDescriptors) {
-      Object.defineProperties(target, Object.getOwnPropertyDescriptors(source));
-    } else {
-      ownKeys(Object(source)).forEach(function (key) {
-        Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key));
-      });
-    }
+    var source = null != arguments[i] ? arguments[i] : {};
+    i % 2 ? ownKeys(Object(source), !0).forEach(function (key) {
+      _defineProperty(target, key, source[key]);
+    }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) {
+      Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key));
+    });
   }
 
   return target;
@@ -115,17 +103,11 @@ function _objectSpread2(target) {
 function _typeof(obj) {
   "@babel/helpers - typeof";
 
-  if (typeof Symbol === "function" && typeof Symbol.iterator === "symbol") {
-    _typeof = function (obj) {
-      return typeof obj;
-    };
-  } else {
-    _typeof = function (obj) {
-      return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj;
-    };
-  }
-
-  return _typeof(obj);
+  return _typeof = "function" == typeof Symbol && "symbol" == typeof Symbol.iterator ? function (obj) {
+    return typeof obj;
+  } : function (obj) {
+    return obj && "function" == typeof Symbol && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj;
+  }, _typeof(obj);
 }
 
 function asyncGeneratorStep(gen, resolve, reject, _next, _throw, key, arg) {
@@ -183,6 +165,9 @@ function _defineProperties(target, props) {
 function _createClass(Constructor, protoProps, staticProps) {
   if (protoProps) _defineProperties(Constructor.prototype, protoProps);
   if (staticProps) _defineProperties(Constructor, staticProps);
+  Object.defineProperty(Constructor, "prototype", {
+    writable: false
+  });
   return Constructor;
 }
 
@@ -206,12 +191,15 @@ function _inherits(subClass, superClass) {
     throw new TypeError("Super expression must either be null or a function");
   }
 
-  subClass.prototype = Object.create(superClass && superClass.prototype, {
-    constructor: {
-      value: subClass,
-      writable: true,
-      configurable: true
-    }
+  Object.defineProperty(subClass, "prototype", {
+    value: Object.create(superClass && superClass.prototype, {
+      constructor: {
+        value: subClass,
+        writable: true,
+        configurable: true
+      }
+    }),
+    writable: false
   });
   if (superClass) _setPrototypeOf(subClass, superClass);
 }
@@ -2165,7 +2153,7 @@ var HierarchicalTrackSelectorStateModelFactory = (function (pluginManager) {
 
 var configSchema$2 = /*#__PURE__*/configuration.ConfigurationSchema('HierarchicalTrackSelectorWidget', {});
 
-var useStyles = /*#__PURE__*/styles.makeStyles(function () {
+var useStyles = /*#__PURE__*/core.makeStyles(function () {
   return {
     closeDialog: {
       position: 'absolute',
@@ -2204,7 +2192,7 @@ function PluginDialog(_ref) {
     onClick: function onClick() {
       return _onClose();
     }
-  }, /*#__PURE__*/React__default.createElement(CloseIcon, null))), /*#__PURE__*/React__default.createElement(core.DialogContent, null, /*#__PURE__*/React__default.createElement(core.Typography, null, "Please confirm that you want to remove ", plugin, ":"), /*#__PURE__*/React__default.createElement(core.DialogActions, null, /*#__PURE__*/React__default.createElement(core.Button, {
+  }, /*#__PURE__*/React__default.createElement(CloseIcon, null))), /*#__PURE__*/React__default.createElement(core.DialogContent, null, /*#__PURE__*/React__default.createElement(core.Typography, null, "Please confirm that you want to remove ", plugin, ". Note: if any resources in this session still use this plugin, it may cause your session to crash"), /*#__PURE__*/React__default.createElement(core.DialogActions, null, /*#__PURE__*/React__default.createElement(core.Button, {
     variant: "contained",
     color: "primary",
     onClick: function onClick() {
@@ -2232,8 +2220,7 @@ function InstalledPlugin(_ref2) {
       dialogPlugin = _useState2[0],
       setDialogPlugin = _useState2[1];
 
-  var session = util.getSession(model); // @ts-ignore
-
+  var session = util.getSession(model);
   var sessionPlugins = session.sessionPlugins;
   var isSessionPlugin = sessionPlugins === null || sessionPlugins === void 0 ? void 0 : sessionPlugins.some(function (p) {
     return pluginManager.pluginMetadata[plugin.name].url === p.url;
@@ -2246,12 +2233,11 @@ function InstalledPlugin(_ref2) {
     onClose: function onClose(name) {
       if (name) {
         var pluginMetadata = pluginManager.pluginMetadata[plugin.name];
-        var pluginUrl = pluginMetadata.url || pluginMetadata.esmUrl || pluginMetadata.umdUrl || pluginMetadata.cjsUrl;
 
         if (adminMode) {
-          jbrowse.removePlugin(pluginUrl);
+          jbrowse.removePlugin(pluginMetadata);
         } else if (types.isSessionWithSessionPlugins(session)) {
-          session.removeSessionPlugin(pluginUrl);
+          session.removeSessionPlugin(pluginMetadata);
         }
       }