@jbrowse/plugin-data-management 1.5.2 → 1.5.6

package/dist/plugin-data-management.esm.js

@@ -10,11 +10,10 @@ import { openLocation } from '@jbrowse/core/util/io';
 import { generateUnknownTrackConf, generateUnsupportedTrackConf, guessAdapter, getFileName, UNSUPPORTED, guessTrackType, UNKNOWN } from '@jbrowse/core/util/tracks';
 import { ElementId } from '@jbrowse/core/util/types/mst';
 import { observer, PropTypes } from 'mobx-react';
-import { ListItem, IconButton, Typography, Tooltip, Dialog, DialogTitle, DialogContent, DialogActions, Button, List, Card, CardContent, Link, CardActions, makeStyles as makeStyles$1, DialogContentText, TextField, Collapse, InputAdornment, Accordion, AccordionSummary, TableRow, TableCell, TableContainer, Paper, Table, TableHead, TableBody, Grid, MenuItem, Fab, Menu, FormControlLabel, Checkbox, ListSubheader, Stepper, Step, StepLabel, StepContent } from '@material-ui/core';
+import { ListItem, IconButton, Typography, Tooltip, Dialog, DialogTitle, DialogContent, DialogActions, Button, makeStyles, List, Card, CardContent, Link, CardActions, DialogContentText, TextField, Collapse, InputAdornment, Accordion, AccordionSummary, TableRow, TableCell, TableContainer, Paper, Table, TableHead, TableBody, Grid, MenuItem, Fab, Menu, FormControlLabel, Checkbox, ListSubheader, Stepper, Step, StepLabel, StepContent } from '@material-ui/core';
 import ExpandMoreIcon from '@material-ui/icons/ExpandMore';
 import ClearIcon from '@material-ui/icons/Clear';
 import InfoOutlinedIcon from '@material-ui/icons/InfoOutlined';
-import { makeStyles } from '@material-ui/core/styles';
 import CloseIcon from '@material-ui/icons/Close';
 import LockIcon from '@material-ui/icons/Lock';
 import { isSessionWithSessionPlugins } from '@jbrowse/core/util/types';
@@ -23,6 +22,7 @@ import AddIcon from '@material-ui/icons/Add';
 import CheckIcon from '@material-ui/icons/Check';
 import clsx from 'clsx';
 import IconButton$1 from '@material-ui/core/IconButton';
+import { makeStyles as makeStyles$1 } from '@material-ui/core/styles';
 import ArrowBackIosIcon from '@material-ui/icons/ArrowBackIos';
 import CreateIcon from '@material-ui/icons/Create';
 import DeleteIcon from '@material-ui/icons/Delete';
@@ -53,14 +53,9 @@ function ownKeys(object, enumerableOnly) {
 
   if (Object.getOwnPropertySymbols) {
     var symbols = Object.getOwnPropertySymbols(object);
-
-    if (enumerableOnly) {
-      symbols = symbols.filter(function (sym) {
-        return Object.getOwnPropertyDescriptor(object, sym).enumerable;
-      });
-    }
-
-    keys.push.apply(keys, symbols);
+    enumerableOnly && (symbols = symbols.filter(function (sym) {
+      return Object.getOwnPropertyDescriptor(object, sym).enumerable;
+    })), keys.push.apply(keys, symbols);
   }
 
   return keys;
@@ -68,19 +63,12 @@ function ownKeys(object, enumerableOnly) {
 
 function _objectSpread2(target) {
   for (var i = 1; i < arguments.length; i++) {
-    var source = arguments[i] != null ? arguments[i] : {};
-
-    if (i % 2) {
-      ownKeys(Object(source), true).forEach(function (key) {
-        _defineProperty(target, key, source[key]);
-      });
-    } else if (Object.getOwnPropertyDescriptors) {
-      Object.defineProperties(target, Object.getOwnPropertyDescriptors(source));
-    } else {
-      ownKeys(Object(source)).forEach(function (key) {
-        Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key));
-      });
-    }
+    var source = null != arguments[i] ? arguments[i] : {};
+    i % 2 ? ownKeys(Object(source), !0).forEach(function (key) {
+      _defineProperty(target, key, source[key]);
+    }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) {
+      Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key));
+    });
   }
 
   return target;
@@ -89,17 +77,11 @@ function _objectSpread2(target) {
 function _typeof(obj) {
   "@babel/helpers - typeof";
 
-  if (typeof Symbol === "function" && typeof Symbol.iterator === "symbol") {
-    _typeof = function (obj) {
-      return typeof obj;
-    };
-  } else {
-    _typeof = function (obj) {
-      return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj;
-    };
-  }
-
-  return _typeof(obj);
+  return _typeof = "function" == typeof Symbol && "symbol" == typeof Symbol.iterator ? function (obj) {
+    return typeof obj;
+  } : function (obj) {
+    return obj && "function" == typeof Symbol && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj;
+  }, _typeof(obj);
 }
 
 function asyncGeneratorStep(gen, resolve, reject, _next, _throw, key, arg) {
@@ -157,6 +139,9 @@ function _defineProperties(target, props) {
 function _createClass(Constructor, protoProps, staticProps) {
   if (protoProps) _defineProperties(Constructor.prototype, protoProps);
   if (staticProps) _defineProperties(Constructor, staticProps);
+  Object.defineProperty(Constructor, "prototype", {
+    writable: false
+  });
   return Constructor;
 }
 
@@ -180,12 +165,15 @@ function _inherits(subClass, superClass) {
     throw new TypeError("Super expression must either be null or a function");
   }
 
-  subClass.prototype = Object.create(superClass && superClass.prototype, {
-    constructor: {
-      value: subClass,
-      writable: true,
-      configurable: true
-    }
+  Object.defineProperty(subClass, "prototype", {
+    value: Object.create(superClass && superClass.prototype, {
+      constructor: {
+        value: subClass,
+        writable: true,
+        configurable: true
+      }
+    }),
+    writable: false
   });
   if (superClass) _setPrototypeOf(subClass, superClass);
 }
@@ -2178,7 +2166,7 @@ function PluginDialog(_ref) {
     onClick: function onClick() {
       return _onClose();
     }
-  }, /*#__PURE__*/React.createElement(CloseIcon, null))), /*#__PURE__*/React.createElement(DialogContent, null, /*#__PURE__*/React.createElement(Typography, null, "Please confirm that you want to remove ", plugin, ":"), /*#__PURE__*/React.createElement(DialogActions, null, /*#__PURE__*/React.createElement(Button, {
+  }, /*#__PURE__*/React.createElement(CloseIcon, null))), /*#__PURE__*/React.createElement(DialogContent, null, /*#__PURE__*/React.createElement(Typography, null, "Please confirm that you want to remove ", plugin, ". Note: if any resources in this session still use this plugin, it may cause your session to crash"), /*#__PURE__*/React.createElement(DialogActions, null, /*#__PURE__*/React.createElement(Button, {
     variant: "contained",
     color: "primary",
     onClick: function onClick() {
@@ -2206,8 +2194,7 @@ function InstalledPlugin(_ref2) {
       dialogPlugin = _useState2[0],
       setDialogPlugin = _useState2[1];
 
-  var session = getSession(model); // @ts-ignore
-
+  var session = getSession(model);
   var sessionPlugins = session.sessionPlugins;
   var isSessionPlugin = sessionPlugins === null || sessionPlugins === void 0 ? void 0 : sessionPlugins.some(function (p) {
     return pluginManager.pluginMetadata[plugin.name].url === p.url;
@@ -2220,12 +2207,11 @@ function InstalledPlugin(_ref2) {
     onClose: function onClose(name) {
       if (name) {
         var pluginMetadata = pluginManager.pluginMetadata[plugin.name];
-        var pluginUrl = pluginMetadata.url || pluginMetadata.esmUrl || pluginMetadata.umdUrl || pluginMetadata.cjsUrl;
 
         if (adminMode) {
-          jbrowse.removePlugin(pluginUrl);
+          jbrowse.removePlugin(pluginMetadata);
         } else if (isSessionWithSessionPlugins(session)) {
-          session.removeSessionPlugin(pluginUrl);
+          session.removeSessionPlugin(pluginMetadata);
         }
       }
 
@@ -2272,7 +2258,7 @@ function InstalledPluginsList(_ref) {
 
 var InstalledPluginsList$1 = /*#__PURE__*/observer(InstalledPluginsList);
 
-var useStyles$1 = /*#__PURE__*/makeStyles$1(function () {
+var useStyles$1 = /*#__PURE__*/makeStyles(function () {
   return {
     card: {
       margin: '1em'
@@ -2356,7 +2342,7 @@ function PluginCard(_ref) {
 
 var PluginCard$1 = /*#__PURE__*/observer(PluginCard);
 
-var useStyles$2 = /*#__PURE__*/makeStyles$1(function (theme) {
+var useStyles$2 = /*#__PURE__*/makeStyles(function (theme) {
   return {
     closeButton: {
       position: 'absolute',
@@ -2536,7 +2522,7 @@ function CustomPluginForm(_ref) {
 
 var CustomPluginForm$1 = /*#__PURE__*/observer(CustomPluginForm);
 
-var useStyles$3 = /*#__PURE__*/makeStyles$1(function (theme) {
+var useStyles$3 = /*#__PURE__*/makeStyles(function (theme) {
   return {
     root: {
       margin: theme.spacing(1)
@@ -2902,7 +2888,7 @@ var index = {
   'default': SetDefaultSession$1
 };
 
-var useStyles$4 = /*#__PURE__*/makeStyles$1(function () {
+var useStyles$4 = /*#__PURE__*/makeStyles(function () {
   return {
     table: {
       minWidth: 500,
@@ -2971,7 +2957,7 @@ var AssemblyTable = /*#__PURE__*/observer(function (_ref) {
   }, "Actions")))), /*#__PURE__*/React.createElement(TableBody, null, rows)));
 });
 
-var useStyles$5 = /*#__PURE__*/makeStyles$1(function (theme) {
+var useStyles$5 = /*#__PURE__*/makeStyles(function (theme) {
   return {
     root: {
       flexGrow: 1,
@@ -3251,7 +3237,7 @@ var AssemblyEditor = /*#__PURE__*/observer(function (_ref) {
   });
 });
 
-var useStyles$6 = /*#__PURE__*/makeStyles(function (theme) {
+var useStyles$6 = /*#__PURE__*/makeStyles$1(function (theme) {
   return {
     titleBox: {
       color: '#fff',
@@ -3375,7 +3361,7 @@ var ManageConnectionsDialog = /*#__PURE__*/lazy(function () {
 var ToggleConnectionsDialog = /*#__PURE__*/lazy(function () {
   return Promise.resolve().then(function () { return ToggleConnectionsDialog$2; });
 });
-var useStyles$7 = /*#__PURE__*/makeStyles$1(function (theme) {
+var useStyles$7 = /*#__PURE__*/makeStyles(function (theme) {
   var _theme$palette$tertia, _theme$palette$tertia2;
 
   return {
@@ -3942,7 +3928,7 @@ var HierarchicalTrackSelector$1 = {
   'default': HierarchicalTrackSelectorContainer
 };
 
-var useStyles$8 = /*#__PURE__*/makeStyles$1(function (theme) {
+var useStyles$8 = /*#__PURE__*/makeStyles(function (theme) {
   return {
     spacing: {
       marginBottom: theme.spacing(3)
@@ -4195,7 +4181,7 @@ function ConfirmTrack(_ref7) {
 
 var ConfirmTrack$1 = /*#__PURE__*/observer(ConfirmTrack);
 
-var useStyles$9 = /*#__PURE__*/makeStyles$1(function (theme) {
+var useStyles$9 = /*#__PURE__*/makeStyles(function (theme) {
   return {
     paper: {
       display: 'flex',
@@ -4235,7 +4221,7 @@ function TrackSourceSelect(_ref) {
 
 var TrackSourceSelect$1 = /*#__PURE__*/observer(TrackSourceSelect);
 
-var useStyles$a = /*#__PURE__*/makeStyles$1(function (theme) {
+var useStyles$a = /*#__PURE__*/makeStyles(function (theme) {
   return {
     root: {
       marginTop: theme.spacing(1)
@@ -4469,7 +4455,7 @@ function ConnectionTypeSelect(props) {
   })));
 }
 
-var useStyles$b = /*#__PURE__*/makeStyles(function (theme) {
+var useStyles$b = /*#__PURE__*/makeStyles$1(function (theme) {
   return {
     root: {
       marginTop: theme.spacing(1)
@@ -4684,7 +4670,7 @@ var DeleteConnectionDialog$3 = {
   'default': DeleteConnectionDialog$2
 };
 
-var useStyles$c = /*#__PURE__*/makeStyles$1(function (theme) {
+var useStyles$c = /*#__PURE__*/makeStyles(function (theme) {
   return {
     closeButton: {
       position: 'absolute',
@@ -4749,7 +4735,7 @@ var ManageConnectionsDialog$2 = {
   'default': ManageConnectionsDialog$1
 };
 
-var useStyles$d = /*#__PURE__*/makeStyles$1(function (theme) {
+var useStyles$d = /*#__PURE__*/makeStyles(function (theme) {
   return {
     closeButton: {
       position: 'absolute',