@jbrowse/plugin-config 3.7.0 → 4.0.0

package/dist/ConfigurationEditorWidget/components/SlotEditor.js

@@ -1,92 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const mst_reflection_1 = require("@jbrowse/core/util/mst-reflection");
-const RadioButtonUnchecked_1 = __importDefault(require("@mui/icons-material/RadioButtonUnchecked"));
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const BooleanEditor_1 = __importDefault(require("./BooleanEditor"));
-const CallbackEditor_1 = __importDefault(require("./CallbackEditor"));
-const ColorEditor_1 = __importDefault(require("./ColorEditor"));
-const ConfigurationTextField_1 = __importDefault(require("./ConfigurationTextField"));
-const JsonEditor_1 = __importDefault(require("./JsonEditor"));
-const NumberEditor_1 = __importDefault(require("./NumberEditor"));
-const NumberMapEditor_1 = __importDefault(require("./NumberMapEditor"));
-const StringArrayEditor_1 = __importDefault(require("./StringArrayEditor"));
-const StringArrayMapEditor_1 = __importDefault(require("./StringArrayMapEditor"));
-const useSlotEditorStyles_1 = require("./useSlotEditorStyles");
-const StringEditor = (0, mobx_react_1.observer)(function ({ slot, }) {
-    return ((0, jsx_runtime_1.jsx)(ConfigurationTextField_1.default, { label: slot.name, helperText: slot.description, value: slot.value, onChange: evt => {
-            slot.set(evt.target.value);
-        } }));
-});
-const TextEditor = (0, mobx_react_1.observer)(function ({ slot, }) {
-    return ((0, jsx_runtime_1.jsx)(material_1.TextField, { label: slot.name, helperText: slot.description, multiline: true, value: slot.value, onChange: evt => {
-            slot.set(evt.target.value);
-        } }));
-});
-const SvgCheckbox = () => ((0, jsx_runtime_1.jsx)(material_1.SvgIcon, { children: (0, jsx_runtime_1.jsx)("path", { d: "M20.41,3C21.8,5.71 22.35,8.84 22,12C21.8,15.16 20.7,18.29 18.83,21L17.3,20C18.91,17.57 19.85,14.8 20,12C20.34,9.2 19.89,6.43 18.7,4L20.41,3M5.17,3L6.7,4C5.09,6.43 4.15,9.2 4,12C3.66,14.8 4.12,17.57 5.3,20L3.61,21C2.21,18.29 1.65,15.17 2,12C2.2,8.84 3.3,5.71 5.17,3M12.08,10.68L14.4,7.45H16.93L13.15,12.45L15.35,17.37H13.09L11.71,14L9.28,17.33H6.76L10.66,12.21L8.53,7.45H10.8L12.08,10.68Z" }) }));
-const IntegerEditor = (0, mobx_react_1.observer)(function ({ slot, }) {
-    const [val, setVal] = (0, react_1.useState)(slot.value);
-    (0, react_1.useEffect)(() => {
-        const num = Number.parseInt(val, 10);
-        if (!Number.isNaN(num)) {
-            slot.set(num);
-        }
-    }, [slot, val]);
-    return ((0, jsx_runtime_1.jsx)(ConfigurationTextField_1.default, { label: slot.name, helperText: slot.description, value: val, type: "number", onChange: evt => {
-            setVal(evt.target.value);
-        } }));
-});
-const StringEnumEditor = (0, mobx_react_1.observer)(function ({ slot, slotSchema, }) {
-    const p = (0, mobx_state_tree_1.getPropertyMembers)((0, mst_reflection_1.getSubType)(slotSchema));
-    const choices = (0, mst_reflection_1.getUnionSubTypes)((0, mst_reflection_1.getUnionSubTypes)((0, mst_reflection_1.getSubType)(p.properties.value))[1]).map(t => t.value);
-    return ((0, jsx_runtime_1.jsx)(ConfigurationTextField_1.default, { value: slot.value, label: slot.name, select: true, helperText: slot.description, onChange: evt => {
-            slot.set(evt.target.value);
-        }, children: choices.map(str => ((0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: str, children: str }, str))) }));
-});
-const FileSelectorWrapper = (0, mobx_react_1.observer)(function ({ slot, }) {
-    var _a;
-    return ((0, jsx_runtime_1.jsx)(ui_1.FileSelector, { location: slot.value, setLocation: location => {
-            slot.set(location);
-        }, name: slot.name, description: slot.description, rootModel: (_a = (0, util_1.getEnv)(slot).pluginManager) === null || _a === void 0 ? void 0 : _a.rootModel }));
-});
-const valueComponents = {
-    string: StringEditor,
-    text: TextEditor,
-    fileLocation: FileSelectorWrapper,
-    stringArray: StringArrayEditor_1.default,
-    stringArrayMap: StringArrayMapEditor_1.default,
-    numberMap: NumberMapEditor_1.default,
-    number: NumberEditor_1.default,
-    integer: IntegerEditor,
-    color: ColorEditor_1.default,
-    stringEnum: StringEnumEditor,
-    boolean: BooleanEditor_1.default,
-    frozen: JsonEditor_1.default,
-    configRelationships: JsonEditor_1.default,
-};
-const SlotEditor = (0, mobx_react_1.observer)(function ({ slot, slotSchema, }) {
-    const { classes } = (0, useSlotEditorStyles_1.useSlotEditorStyles)();
-    const { type } = slot;
-    let ValueComponent = slot.isCallback
-        ? CallbackEditor_1.default
-        :
-            valueComponents[type];
-    if (!ValueComponent) {
-        console.warn(`no slot editor defined for ${type}, editing as string`);
-        ValueComponent = StringEditor;
-    }
-    if (!(type in valueComponents)) {
-        console.warn(`SlotEditor needs to implement ${type}`);
-    }
-    return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { className: classes.paper, children: [(0, jsx_runtime_1.jsx)("div", { className: classes.paperContent, children: (0, jsx_runtime_1.jsx)(ValueComponent, { slot: slot, slotSchema: slotSchema }) }), (0, jsx_runtime_1.jsx)("div", { className: classes.slotModeSwitch, children: slot.contextVariable.length ? ((0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => slot.isCallback ? slot.convertToValue() : slot.convertToCallback(), title: `convert to ${slot.isCallback ? 'regular value' : 'callback'}`, children: slot.isCallback ? (0, jsx_runtime_1.jsx)(SvgCheckbox, {}) : (0, jsx_runtime_1.jsx)(RadioButtonUnchecked_1.default, {}) })) : null })] }));
-});
-exports.default = SlotEditor;

package/dist/ConfigurationEditorWidget/components/StringArrayEditor.d.ts

@@ -1,11 +0,0 @@
-declare const StringArrayEditor: ({ slot, }: {
-    slot: {
-        name: string;
-        value: string[];
-        setAtIndex: (arg: number, arg2: string) => void;
-        removeAtIndex: (arg: number) => void;
-        add: (arg: string) => void;
-        description: string;
-    };
-}) => import("react/jsx-runtime").JSX.Element;
-export default StringArrayEditor;

package/dist/ConfigurationEditorWidget/components/StringArrayEditor.js

@@ -1,39 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const Delete_1 = __importDefault(require("@mui/icons-material/Delete"));
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const StringArrayEditor = (0, mobx_react_1.observer)(function ({ slot, }) {
-    const [value, setValue] = (0, react_1.useState)('');
-    const [addNew, setAddNew] = (0, react_1.useState)(false);
-    return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [slot.name ? (0, jsx_runtime_1.jsx)(material_1.InputLabel, { children: slot.name }) : null, (0, jsx_runtime_1.jsxs)(material_1.List, { disablePadding: true, children: [slot.value.map((val, idx) => ((0, jsx_runtime_1.jsx)(material_1.ListItem, { disableGutters: true, children: (0, jsx_runtime_1.jsx)(material_1.TextField, { value: val, onChange: evt => {
-                                slot.setAtIndex(idx, evt.target.value);
-                            }, slotProps: {
-                                input: {
-                                    endAdornment: ((0, jsx_runtime_1.jsx)(material_1.InputAdornment, { position: "end", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
-                                                slot.removeAtIndex(idx);
-                                            }, children: (0, jsx_runtime_1.jsx)(Delete_1.default, {}) }) })),
-                                },
-                            } }) }, `${JSON.stringify(val)}-${idx}`))), addNew ? ((0, jsx_runtime_1.jsx)(material_1.ListItem, { disableGutters: true, children: (0, jsx_runtime_1.jsx)(material_1.TextField, { value: value, placeholder: "add new", onChange: event => {
-                                setValue(event.target.value);
-                            }, slotProps: {
-                                input: {
-                                    endAdornment: ((0, jsx_runtime_1.jsx)(material_1.InputAdornment, { position: "end", children: (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { color: "primary", variant: "contained", style: { margin: 2 }, "data-testid": `stringArrayAdd-${slot.name}`, onClick: () => {
-                                                        setAddNew(false);
-                                                        slot.add(value);
-                                                        setValue('');
-                                                    }, children: "OK" }), (0, jsx_runtime_1.jsx)(material_1.Button, { color: "primary", variant: "contained", style: { margin: 2 }, onClick: () => {
-                                                        setAddNew(false);
-                                                        setValue('');
-                                                    }, children: "Cancel" })] }) })),
-                                },
-                            } }) })) : null, (0, jsx_runtime_1.jsx)(material_1.Button, { color: "primary", variant: "contained", style: { margin: 4 }, disabled: addNew, onClick: () => {
-                            setAddNew(true);
-                        }, children: "Add item" })] }), (0, jsx_runtime_1.jsx)(material_1.FormHelperText, { children: slot.description })] }));
-});
-exports.default = StringArrayEditor;

package/dist/ConfigurationEditorWidget/components/StringArrayMapEditor.d.ts

@@ -1,13 +0,0 @@
-declare const StringArrayMapEditor: ({ slot, }: {
-    slot: {
-        name: string;
-        value: Map<string, string[]>;
-        remove: (key: string) => void;
-        add: (key: string, val: string[]) => void;
-        description: string;
-        setAtKeyIndex: (key: string, idx: number, val: string) => void;
-        removeAtKeyIndex: (key: string, idx: number) => void;
-        addToKey: (key: string, val: string) => void;
-    };
-}) => import("react/jsx-runtime").JSX.Element;
-export default StringArrayMapEditor;

package/dist/ConfigurationEditorWidget/components/StringArrayMapEditor.js

@@ -1,48 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const Add_1 = __importDefault(require("@mui/icons-material/Add"));
-const Delete_1 = __importDefault(require("@mui/icons-material/Delete"));
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const StringArrayEditor_1 = __importDefault(require("./StringArrayEditor"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    card: {
-        marginTop: theme.spacing(1),
-    },
-}));
-const StringArrayMapEditor = (0, mobx_react_1.observer)(function ({ slot, }) {
-    const { classes } = useStyles();
-    const [value, setValue] = (0, react_1.useState)('');
-    return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.InputLabel, { children: slot.name }), [...slot.value].map(([key, val]) => ((0, jsx_runtime_1.jsxs)(material_1.Card, { raised: true, className: classes.card, children: [(0, jsx_runtime_1.jsx)(material_1.CardHeader, { title: key, action: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
-                                slot.remove(key);
-                            }, children: (0, jsx_runtime_1.jsx)(Delete_1.default, {}) }) }), (0, jsx_runtime_1.jsx)(material_1.CardContent, { children: (0, jsx_runtime_1.jsx)(StringArrayEditor_1.default, { slot: {
-                                name: slot.name,
-                                value: val,
-                                description: `Values associated with entry ${key}`,
-                                setAtIndex: (idx, val) => {
-                                    slot.setAtKeyIndex(key, idx, val);
-                                },
-                                removeAtIndex: (idx) => {
-                                    slot.removeAtKeyIndex(key, idx);
-                                },
-                                add: (val) => {
-                                    slot.addToKey(key, val);
-                                },
-                            } }) })] }, key))), (0, jsx_runtime_1.jsx)(material_1.Card, { raised: true, className: classes.card, children: (0, jsx_runtime_1.jsx)(material_1.CardHeader, { disableTypography: true, title: (0, jsx_runtime_1.jsx)(material_1.TextField, { fullWidth: true, value: value, placeholder: "add new", onChange: event => {
-                            setValue(event.target.value);
-                        }, slotProps: {
-                            input: {
-                                endAdornment: ((0, jsx_runtime_1.jsx)(material_1.InputAdornment, { position: "end", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { disabled: value === '', onClick: () => {
-                                            slot.add(value, []);
-                                            setValue('');
-                                        }, children: (0, jsx_runtime_1.jsx)(Add_1.default, {}) }) })),
-                            },
-                        } }) }) }), (0, jsx_runtime_1.jsx)(material_1.FormHelperText, { children: slot.description })] }));
-});
-exports.default = StringArrayMapEditor;

package/dist/ConfigurationEditorWidget/components/TypeSelector.d.ts

@@ -1,8 +0,0 @@
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-declare const TypeSelector: ({ typeNameChoices, slot, slotName, onChange, }: {
-    typeNameChoices: string[];
-    slot: AnyConfigurationModel;
-    slotName: string;
-    onChange: (event: React.ChangeEvent<HTMLInputElement>) => void;
-}) => import("react/jsx-runtime").JSX.Element;
-export default TypeSelector;

package/dist/ConfigurationEditorWidget/components/TypeSelector.js

@@ -1,11 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const useSlotEditorStyles_1 = require("./useSlotEditorStyles");
-const TypeSelector = (0, mobx_react_1.observer)(function ({ typeNameChoices, slot, slotName, onChange, }) {
-    const { classes } = (0, useSlotEditorStyles_1.useSlotEditorStyles)();
-    return ((0, jsx_runtime_1.jsx)(material_1.Paper, { className: classes.paper, children: (0, jsx_runtime_1.jsx)("div", { className: classes.paperContent, children: (0, jsx_runtime_1.jsx)(material_1.TextField, { value: slot.type, label: "Type", select: true, helperText: `Type of ${slotName} to use`, fullWidth: true, onChange: onChange, children: typeNameChoices.map(str => ((0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: str, children: str }, str))) }) }) }));
-});
-exports.default = TypeSelector;

package/dist/ConfigurationEditorWidget/components/useSlotEditorStyles.d.ts

@@ -1,9 +0,0 @@
-export declare const useSlotEditorStyles: (params: void, muiStyleOverridesParams?: {
-    props: Record<string, unknown>;
-    ownerState?: Record<string, unknown> | undefined;
-} | undefined) => {
-    classes: Record<"paper" | "paperContent" | "slotModeSwitch", string>;
-    theme: import("@mui/material").Theme;
-    css: import("tss-react/types").Css;
-    cx: import("tss-react/types").Cx;
-};

package/dist/ConfigurationEditorWidget/components/useSlotEditorStyles.js

@@ -1,21 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.useSlotEditorStyles = void 0;
-const mui_1 = require("tss-react/mui");
-exports.useSlotEditorStyles = (0, mui_1.makeStyles)()(theme => ({
-    paper: {
-        display: 'flex',
-        marginBottom: theme.spacing(2),
-        position: 'relative',
-    },
-    paperContent: {
-        width: '100%',
-    },
-    slotModeSwitch: {
-        width: 24,
-        background: theme.palette.secondary.light,
-        display: 'flex',
-        justifyContent: 'center',
-        alignItems: 'center',
-    },
-}));

package/dist/ConfigurationEditorWidget/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function registerConfigurationEditorWidget(pluginManager: PluginManager): void;

package/dist/ConfigurationEditorWidget/index.js

@@ -1,57 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = registerConfigurationEditorWidget;
-const react_1 = require("react");
-const configuration_1 = require("@jbrowse/core/configuration");
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const HeadingComponent_1 = __importDefault(require("./components/HeadingComponent"));
-const model_1 = __importDefault(require("./model"));
-const configSchema = (0, configuration_1.ConfigurationSchema)('ConfigurationEditorWidget', {});
-const LazyConfigurationEditorComponent = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/ConfigurationEditor'))));
-function registerConfigurationEditorWidget(pluginManager) {
-    pluginManager.addWidgetType(() => {
-        return new pluggableElementTypes_1.WidgetType({
-            name: 'ConfigurationEditorWidget',
-            HeadingComponent: HeadingComponent_1.default,
-            configSchema,
-            stateModel: (0, model_1.default)(pluginManager),
-            ReactComponent: LazyConfigurationEditorComponent,
-        });
-    });
-}

package/dist/ConfigurationEditorWidget/model.d.ts

@@ -1,8 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"ConfigurationEditorWidget">;
-    target: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyModelType>>;
-}, {
-    setTarget(newTarget: any): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/ConfigurationEditorWidget/model.js

@@ -1,18 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = stateModelFactory;
-const mst_1 = require("@jbrowse/core/util/types/mst");
-const mobx_state_tree_1 = require("mobx-state-tree");
-function stateModelFactory(pluginManager) {
-    return mobx_state_tree_1.types
-        .model('ConfigurationEditorWidget', {
-        id: mst_1.ElementId,
-        type: mobx_state_tree_1.types.literal('ConfigurationEditorWidget'),
-        target: mobx_state_tree_1.types.safeReference(pluginManager.pluggableConfigSchemaType('track')),
-    })
-        .actions(self => ({
-        setTarget(newTarget) {
-            self.target = newTarget;
-        },
-    }));
-}

package/dist/FromConfigAdapter/FromConfigAdapter.d.ts

@@ -1,17 +0,0 @@
-import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-import type { Feature, SimpleFeatureSerialized } from '@jbrowse/core/util/simpleFeature';
-import type { NoAssemblyRegion } from '@jbrowse/core/util/types';
-export declare function makeFeatures(fdata: SimpleFeatureSerialized[]): Map<string, Feature[]>;
-export default class FromConfigAdapter extends BaseFeatureDataAdapter {
-    protected features: Map<string, Feature[]>;
-    constructor(conf: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    getRefNames(): Promise<string[]>;
-    getRefNameAliases(): Promise<{
-        refName: string;
-        aliases: any;
-    }[]>;
-    getFeatures(region: NoAssemblyRegion): import("rxjs").Observable<Feature>;
-}

package/dist/FromConfigAdapter/FromConfigAdapter.js

@@ -1,56 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.makeFeatures = makeFeatures;
-const configuration_1 = require("@jbrowse/core/configuration");
-const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
-const rxjs_1 = require("@jbrowse/core/util/rxjs");
-const simpleFeature_1 = __importDefault(require("@jbrowse/core/util/simpleFeature"));
-function makeFeatures(fdata) {
-    const features = new Map();
-    for (const entry of fdata) {
-        const f = new simpleFeature_1.default(entry);
-        const refName = f.get('refName');
-        let bucket = features.get(refName);
-        if (!bucket) {
-            bucket = [];
-            features.set(refName, bucket);
-        }
-        bucket.push(f);
-    }
-    for (const refFeatures of features.values()) {
-        refFeatures.sort((a, b) => a.get('start') - b.get('start'));
-    }
-    return features;
-}
-class FromConfigAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
-    constructor(conf, getSubAdapter, pluginManager) {
-        super(conf, getSubAdapter, pluginManager);
-        const feats = (0, configuration_1.readConfObject)(conf, 'features');
-        this.features = makeFeatures(feats);
-    }
-    async getRefNames() {
-        return [...this.features.keys()];
-    }
-    async getRefNameAliases() {
-        return [...this.features.values()].map(featureArray => ({
-            refName: featureArray[0].get('refName'),
-            aliases: featureArray[0].get('aliases'),
-        }));
-    }
-    getFeatures(region) {
-        const { refName, start, end } = region;
-        return (0, rxjs_1.ObservableCreate)(async (observer) => {
-            const features = this.features.get(refName) || [];
-            for (const f of features) {
-                if (f.get('end') > start && f.get('start') < end) {
-                    observer.next(f);
-                }
-            }
-            observer.complete();
-        });
-    }
-}
-exports.default = FromConfigAdapter;

package/dist/FromConfigAdapter/configSchema.d.ts

@@ -1,7 +0,0 @@
-declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    features: {
-        type: string;
-        defaultValue: never[];
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default configSchema;

package/dist/FromConfigAdapter/configSchema.js

@@ -1,11 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-function x() { }
-const configSchema = (0, configuration_1.ConfigurationSchema)('FromConfigAdapter', {
-    features: {
-        type: 'frozen',
-        defaultValue: [],
-    },
-}, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
-exports.default = configSchema;

package/dist/FromConfigAdapter/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function FromConfigAdapterF(pluginManager: PluginManager): void;

package/dist/FromConfigAdapter/index.js

@@ -1,51 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = FromConfigAdapterF;
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const configSchema_1 = __importDefault(require("./configSchema"));
-function FromConfigAdapterF(pluginManager) {
-    pluginManager.addAdapterType(() => new pluggableElementTypes_1.AdapterType({
-        name: 'FromConfigAdapter',
-        configSchema: configSchema_1.default,
-        getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./FromConfigAdapter'))).then(r => r.default),
-        adapterMetadata: {
-            hiddenFromGUI: true,
-        },
-    }));
-}

package/dist/FromConfigRegionsAdapter/FromConfigRegionsAdapter.d.ts

@@ -1,14 +0,0 @@
-import { BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-export default class FromConfigRegionsAdapter extends BaseAdapter implements RegionsAdapter {
-    private features;
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    getRegions(): Promise<{
-        refName: string;
-        start: number;
-        end: number;
-    }[]>;
-}

package/dist/FromConfigRegionsAdapter/FromConfigRegionsAdapter.js

@@ -1,41 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
-const FromConfigAdapter_1 = require("../FromConfigAdapter/FromConfigAdapter");
-class FromConfigRegionsAdapter extends BaseAdapter_1.BaseAdapter {
-    constructor(config, getSubAdapter, pluginManager) {
-        super(config, getSubAdapter, pluginManager);
-        const f = (0, configuration_1.readConfObject)(config, 'features');
-        this.features = (0, FromConfigAdapter_1.makeFeatures)(f);
-    }
-    async getRegions() {
-        const regions = [];
-        for (const [refName, features] of this.features) {
-            let currentRegion;
-            for (const feature of features) {
-                if (currentRegion &&
-                    currentRegion.end >= feature.get('start') &&
-                    currentRegion.start <= feature.get('end')) {
-                    currentRegion.end = feature.get('end');
-                }
-                else {
-                    if (currentRegion) {
-                        regions.push(currentRegion);
-                    }
-                    currentRegion = {
-                        refName,
-                        start: feature.get('start'),
-                        end: feature.get('end'),
-                    };
-                }
-            }
-            if (currentRegion) {
-                regions.push(currentRegion);
-            }
-        }
-        regions.sort((a, b) => a.refName.localeCompare(b.refName));
-        return regions;
-    }
-}
-exports.default = FromConfigRegionsAdapter;

package/dist/FromConfigRegionsAdapter/configSchema.d.ts

@@ -1,7 +0,0 @@
-declare const regionsConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    features: {
-        type: string;
-        defaultValue: never[];
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default regionsConfigSchema;

package/dist/FromConfigRegionsAdapter/configSchema.js

@@ -1,14 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-function x() { }
-const regionsConfigSchema = (0, configuration_1.ConfigurationSchema)('FromConfigRegionsAdapter', {
-    features: {
-        type: 'frozen',
-        defaultValue: [],
-    },
-}, {
-    explicitlyTyped: true,
-    implicitIdentifier: 'adapterId',
-});
-exports.default = regionsConfigSchema;

package/dist/FromConfigRegionsAdapter/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function FromConfigRegionsAdapterF(pluginManager: PluginManager): void;