@jbrowse/plugin-config 2.6.1 → 2.6.3

package/esm/ConfigurationEditorWidget/components/JsonEditor.js.map

@@ -1 +0,0 @@
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package/esm/ConfigurationEditorWidget/components/NumberEditor.js.map

@@ -1 +0,0 @@
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package/esm/ConfigurationEditorWidget/components/NumberMapEditor.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"NumberMapEditor.js","sourceRoot":"","sources":["../../../src/ConfigurationEditorWidget/components/NumberMapEditor.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EACL,IAAI,EACJ,WAAW,EACX,UAAU,EACV,cAAc,EACd,UAAU,EACV,cAAc,EACd,UAAU,EACV,SAAS,GACV,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,QAAQ;AACR,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,OAAO,MAAM,yBAAyB,CAAA;AAC7C,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;CACF,CAAC,CAAC,CAAA;AAEH,eAAe,QAAQ,CAAC,UAAU,EAChC,IAAI,GASL;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACtC,OAAO,CACL;QACE,oBAAC,UAAU,QAAE,IAAI,CAAC,IAAI,CAAc;QACnC,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,EAAE,CAAC,CACnC,oBAAC,IAAI,IAAC,MAAM,QAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,OAAO,CAAC,IAAI;YAC5C,oBAAC,UAAU,IACT,KAAK,EAAE,GAAG,EACV,MAAM,EACJ,oBAAC,UAAU,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC;oBACzC,oBAAC,UAAU,OAAG,CACH,GAEf;YACF,oBAAC,WAAW;gBACV,oBAAC,YAAY,IACX,IAAI,EAAE;wBACJ,KAAK,EAAE,GAAG;wBACV,GAAG,EAAE,CAAC,GAAW,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC;qBACzC,GACD,CACU,CACT,CACR,CAAC;QACF,oBAAC,IAAI,IAAC,MAAM,QAAC,SAAS,EAAE,OAAO,CAAC,IAAI;YAClC,oBAAC,UAAU,IACT,iBAAiB,QACjB,KAAK,EACH,oBAAC,SAAS,IACR,SAAS,QACT,KAAK,EAAE,KAAK,EACZ,WAAW,EAAC,SAAS,EACrB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC/C,UAAU,EAAE;wBACV,YAAY,EAAE,CACZ,oBAAC,cAAc,IAAC,QAAQ,EAAC,KAAK;4BAC5B,oBAAC,UAAU,IACT,QAAQ,EAAE,KAAK,KAAK,EAAE,EACtB,OAAO,EAAE,GAAG,EAAE;oCACZ,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,CAAC,CAAC,CAAA;oCAClB,QAAQ,CAAC,EAAE,CAAC,CAAA;gCACd,CAAC;gCAED,oBAAC,OAAO,OAAG,CACA,CACE,CAClB;qBACF,GACD,GAEJ,CACG;QACP,oBAAC,cAAc,QAAE,IAAI,CAAC,WAAW,CAAkB,CAClD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA"}

package/esm/ConfigurationEditorWidget/components/SlotEditor.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"SlotEditor.js","sourceRoot":"","sources":["../../../src/ConfigurationEditorWidget/components/SlotEditor.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,kBAAkB,EAAY,MAAM,iBAAiB,CAAA;AAC9D,OAAO,EAAE,MAAM,EAAgB,MAAM,oBAAoB,CAAA;AACzD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EACL,UAAU,EACV,gBAAgB,GAEjB,MAAM,mCAAmC,CAAA;AAC1C,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,KAAK,EAAE,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AAC/E,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,QAAQ;AACR,OAAO,wBAAwB,MAAM,0CAA0C,CAAA;AAE/E,SAAS;AACT,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AACnD,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,WAAW,MAAM,eAAe,CAAA;AACvC,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AACzD,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,aAAa,MAAM,iBAAiB,CAAA;AAM3C,MAAM,YAAY,GAAG,QAAQ,CAC3B,CAAC,EACC,IAAI,GAQL,EAAE,EAAE,CAAC,CACJ,oBAAC,sBAAsB,IACrB,KAAK,EAAE,IAAI,CAAC,IAAI,EAChB,UAAU,EAAE,IAAI,CAAC,WAAW,EAC5B,KAAK,EAAE,IAAI,CAAC,KAAK,EACjB,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,GAC3C,CACH,CACF,CAAA;AAED,MAAM,UAAU,GAAG,QAAQ,CACzB,CAAC,EACC,IAAI,GAQL,EAAE,EAAE,CAAC,CACJ,oBAAC,SAAS,IACR,KAAK,EAAE,IAAI,CAAC,IAAI,EAChB,UAAU,EAAE,IAAI,CAAC,WAAW,EAC5B,SAAS,QACT,KAAK,EAAE,IAAI,CAAC,KAAK,EACjB,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,GAC3C,CACH,CACF,CAAA;AAED,4CAA4C;AAC5C,MAAM,WAAW,GAAG,GAAG,EAAE,CAAC,CACxB,oBAAC,OAAO;IACN,8BAAM,CAAC,EAAC,qYAAqY,GAAG,CACxY,CACX,CAAA;AAED,MAAM,aAAa,GAAG,QAAQ,CAC5B,CAAC,EACC,IAAI,GAQL,EAAE,EAAE;IACH,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAC1C,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,MAAM,CAAC,QAAQ,CAAC,GAAG,EAAE,EAAE,CAAC,CAAA;QACpC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE;YACtB,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAA;SACd;IACH,CAAC,EAAE,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,CAAA;IACf,OAAO,CACL,oBAAC,sBAAsB,IACrB,KAAK,EAAE,IAAI,CAAC,IAAI,EAChB,UAAU,EAAE,IAAI,CAAC,WAAW,EAC5B,KAAK,EAAE,GAAG,EACV,IAAI,EAAC,QAAQ,EACb,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,GACzC,CACH,CAAA;AACH,CAAC,CACF,CAAA;AAED,MAAM,gBAAgB,GAAG,QAAQ,CAAC,UAAU,EAC1C,IAAI,EACJ,UAAU,GAIX;IACC,MAAM,CAAC,GAAG,kBAAkB,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC,CAAA;IACpD,MAAM,OAAO,GAAG,gBAAgB,CAC9B,gBAAgB,CAAC,UAAU,CAAC,CAAC,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CACpD,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAE,CAA0B,CAAC,KAAK,CAAC,CAAA;IAE7C,OAAO,CACL,oBAAC,sBAAsB,IACrB,KAAK,EAAE,IAAI,CAAC,KAAK,EACjB,KAAK,EAAE,IAAI,CAAC,IAAI,EAChB,MAAM,QACN,UAAU,EAAE,IAAI,CAAC,WAAW,EAC5B,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,IAE1C,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAClB,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACqB,CAC1B,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,mBAAmB,GAAG,QAAQ,CAAC,UAAU,EAC7C,IAAI,GAQL;;IACC,OAAO,CACL,oBAAC,YAAY,IACX,QAAQ,EAAE,IAAI,CAAC,KAAK,EACpB,WAAW,EAAE,QAAQ,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,EAC3C,IAAI,EAAE,IAAI,CAAC,IAAI,EACf,WAAW,EAAE,IAAI,CAAC,WAAW,EAC7B,SAAS,EAAE,MAAA,MAAM,CAAC,IAAI,CAAC,CAAC,aAAa,0CAAE,SAAS,GAChD,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,eAAe,GAAG;IACtB,MAAM,EAAE,YAAY;IACpB,IAAI,EAAE,UAAU;IAChB,YAAY,EAAE,mBAAmB;IACjC,WAAW,EAAE,iBAAiB;IAC9B,cAAc,EAAE,oBAAoB;IACpC,SAAS,EAAE,eAAe;IAC1B,MAAM,EAAE,YAAY;IACpB,OAAO,EAAE,aAAa;IACtB,KAAK,EAAE,WAAW;IAClB,UAAU,EAAE,gBAAgB;IAC5B,OAAO,EAAE,aAAa;IACtB,MAAM,EAAE,UAAU;IAClB,mBAAmB,EAAE,UAAU;CAChC,CAAA;AAED,MAAM,CAAC,MAAM,mBAAmB,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACxD,KAAK,EAAE;QACL,OAAO,EAAE,MAAM;QACf,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC9B,QAAQ,EAAE,UAAU;KACrB;IACD,YAAY,EAAE;QACZ,KAAK,EAAE,MAAM;KACd;IACD,cAAc,EAAE;QACd,KAAK,EAAE,EAAE;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,SAAS,CAAC,KAAK;QACzC,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,QAAQ;QACxB,UAAU,EAAE,QAAQ;KACrB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,UAAU,GAAG,QAAQ;AACzB,8DAA8D;AAC9D,CAAC,EAAE,IAAI,EAAE,UAAU,EAAuC,EAAE,EAAE;IAC5D,MAAM,EAAE,OAAO,EAAE,GAAG,mBAAmB,EAAE,CAAA;IACzC,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAA;IACrB,IAAI,cAAc,GAAG,IAAI,CAAC,UAAU;QAClC,CAAC,CAAC,cAAc;QAChB,CAAC,CAAC,mBAAmB;YACnB,eAAe,CAAC,IAAI,CAAC,CAAA;IACzB,IAAI,CAAC,cAAc,EAAE;QACnB,OAAO,CAAC,IAAI,CAAC,8BAA8B,IAAI,qBAAqB,CAAC,CAAA;QACrE,cAAc,GAAG,YAAY,CAAA;KAC9B;IACD,IAAI,CAAC,CAAC,IAAI,IAAI,eAAe,CAAC,EAAE;QAC9B,OAAO,CAAC,IAAI,CAAC,iCAAiC,IAAI,EAAE,CAAC,CAAA;KACtD;IACD,OAAO,CACL,oBAAC,KAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,6BAAK,SAAS,EAAE,OAAO,CAAC,YAAY;YAClC,oBAAC,cAAc,IAAC,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,GAAI,CAClD;QACN,6BAAK,SAAS,EAAE,OAAO,CAAC,cAAc,IACnC,IAAI,CAAC,eAAe,CAAC,MAAM,CAAC,CAAC,CAAC,CAC7B,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE,CACZ,IAAI,CAAC,UAAU;gBACb,CAAC,CAAC,IAAI,CAAC,cAAc,EAAE;gBACvB,CAAC,CAAC,IAAI,CAAC,iBAAiB,EAAE,EAE9B,KAAK,EAAE,cACL,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,UACtC,EAAE,IAED,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,oBAAC,WAAW,OAAG,CAAC,CAAC,CAAC,oBAAC,wBAAwB,OAAG,CA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package/esm/ConfigurationEditorWidget/components/StringArrayEditor.js.map

@@ -1 +0,0 @@
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package/esm/ConfigurationEditorWidget/components/StringArrayMapEditor.js.map

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package/esm/ConfigurationEditorWidget/index.js.map

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package/esm/ConfigurationEditorWidget/model.js.map

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package/esm/FromConfigAdapter/FromConfigAdapter.js.map

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package/esm/FromConfigAdapter/configSchema.js.map

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package/esm/FromConfigAdapter/index.js.map

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package/esm/FromConfigRegionsAdapter/FromConfigRegionsAdapter.js.map

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package/esm/FromConfigRegionsAdapter/configSchema.js.map

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package/esm/FromConfigSequenceAdapter/FromConfigSequenceAdapter.js.map

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package/esm/FromConfigSequenceAdapter/index.js.map

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package/esm/RefNameAliasAdapter/RefNameAliasAdapter.js.map

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package/esm/RefNameAliasAdapter/index.js.map

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package/esm/index.js.map

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package/src/ConfigurationEditorWidget/components/BooleanEditor.tsx

@@ -1,35 +0,0 @@
-import React from 'react'
-import { observer } from 'mobx-react'
-
-import {
-  Checkbox,
-  FormControl,
-  FormControlLabel,
-  FormHelperText,
-} from '@mui/material'
-
-export default observer(function ({
-  slot,
-}: {
-  slot: {
-    name: string
-    value: boolean
-    set: (arg: boolean) => void
-    description: string
-  }
-}) {
-  return (
-    <FormControl>
-      <FormControlLabel
-        label={slot.name}
-        control={
-          <Checkbox
-            checked={slot.value}
-            onChange={evt => slot.set(evt.target.checked)}
-          />
-        }
-      />
-      <FormHelperText>{slot.description}</FormHelperText>
-    </FormControl>
-  )
-})

package/src/ConfigurationEditorWidget/components/CallbackEditor.tsx

@@ -1,126 +0,0 @@
-import React, { useEffect, useState } from 'react'
-import { Tooltip, IconButton, TextField } from '@mui/material'
-import { useDebounce } from '@jbrowse/core/util'
-import { stringToJexlExpression } from '@jbrowse/core/util/jexlStrings'
-import { getEnv } from 'mobx-state-tree'
-import { observer } from 'mobx-react'
-import { makeStyles } from 'tss-react/mui'
-
-// icons
-import HelpIcon from '@mui/icons-material/Help'
-
-// Optimize by using system default fonts:
-// https://css-tricks.com/snippets/css/font-stacks/
-const fontFamily =
-  'Consolas, "Andale Mono WT", "Andale Mono", "Lucida Console", "Lucida Sans Typewriter", "DejaVu Sans Mono", "Bitstream Vera Sans Mono", "Liberation Mono", "Nimbus Mono L", Monaco, "Courier New", Courier, monospace'
-
-const useStyles = makeStyles()(theme => ({
-  callbackEditor: {
-    marginTop: '16px',
-    borderBottom: `1px solid ${theme.palette.divider}`,
-    width: '100%',
-    fontFamily,
-  },
-  textAreaFont: {
-    fontFamily,
-  },
-  callbackContainer: {
-    width: '100%',
-    overflowX: 'auto',
-  },
-
-  error: {
-    color: 'red',
-    fontSize: '0.8em',
-  },
-}))
-
-function CallbackEditor({
-  slot,
-}: {
-  slot: {
-    set: (arg: string) => void
-    description: string
-    name: string
-    value: string
-    contextVariable: string
-  }
-}) {
-  const { classes } = useStyles()
-
-  const [code, setCode] = useState(slot.value)
-  const [error, setCodeError] = useState<unknown>()
-  const debouncedCode = useDebounce(code, 400)
-
-  useEffect(() => {
-    try {
-      const jexlDebouncedCode = debouncedCode.startsWith('jexl:')
-        ? debouncedCode
-        : `jexl:${debouncedCode}`
-
-      if (jexlDebouncedCode === 'jexl:') {
-        throw new Error('Empty jexl expression is not valid')
-      }
-      stringToJexlExpression(
-        jexlDebouncedCode,
-        getEnv(slot).pluginManager?.jexl,
-      )
-      slot.set(jexlDebouncedCode)
-      setCodeError(undefined)
-    } catch (e) {
-      console.error({ e })
-      setCodeError(e)
-    }
-  }, [debouncedCode, slot])
-
-  // if default value is a callback, will have to remove jexl:
-  // do this last
-  return (
-    <>
-      {error ? <p className={classes.error}>{`${error}`}</p> : null}
-      <div className={classes.callbackContainer}>
-        <TextField
-          multiline
-          className={classes.callbackEditor}
-          value={code.startsWith('jexl:') ? code.split('jexl:')[1] : code}
-          onChange={event => setCode(event.target.value)}
-          style={{ background: error ? '#fdd' : undefined }}
-          InputProps={{
-            classes: {
-              input: classes.textAreaFont,
-            },
-          }}
-        />
-
-        <p>{slot.description}</p>
-        <Tooltip
-          title={
-            <div>
-              Callbacks are written in Jexl format. Click to learn more.
-              <br /> Names of available context items: {slot.contextVariable}
-            </div>
-          }
-          arrow
-        >
-          <IconButton
-            color="primary"
-            onClick={() => {
-              const newWindow = window.open(
-                'https://github.com/TomFrost/Jexl',
-                '_blank',
-                'noopener,noreferrer',
-              )
-              if (newWindow) {
-                newWindow.opener = null
-              }
-            }}
-          >
-            <HelpIcon />
-          </IconButton>
-        </Tooltip>
-      </div>
-    </>
-  )
-}
-
-export default observer(CallbackEditor)

package/src/ConfigurationEditorWidget/components/ColorEditor.test.tsx

@@ -1,14 +0,0 @@
-import React from 'react'
-import { render, fireEvent } from '@testing-library/react'
-
-import { ColorSlot } from './ColorEditor'
-
-test('can change value via the text field', () => {
-  const myfn = jest.fn()
-  const { getByDisplayValue } = render(
-    <ColorSlot value="green" onChange={myfn} />,
-  )
-  const ret = getByDisplayValue('green')
-  fireEvent.change(ret, { target: { value: 'red' } })
-  expect(myfn).toHaveBeenCalledWith('red')
-})

package/src/ConfigurationEditorWidget/components/ColorEditor.tsx

@@ -1,59 +0,0 @@
-import React, { lazy, useState } from 'react'
-import { observer } from 'mobx-react'
-import { TextField } from '@mui/material'
-
-const ColorPicker = lazy(() => import('@jbrowse/core/ui/ColorPicker'))
-
-export const ColorSlot = (props: {
-  value: string
-  label?: string
-  TextFieldProps?: {
-    helperText: string
-    fullWidth: boolean
-  }
-  onChange: (arg: string) => void
-}) => {
-  const { value = '#000', label = '', TextFieldProps = {}, onChange } = props
-  const [displayed, setDisplayed] = useState(false)
-
-  return (
-    <div style={{ display: 'flex' }}>
-      <TextField
-        value={value}
-        label={label}
-        onClick={() => setDisplayed(!displayed)}
-        onChange={event => onChange(event.target.value)}
-        {...TextFieldProps}
-      />
-      <div style={{ marginTop: 10 }}>
-        <React.Suspense fallback={<div />}>
-          <ColorPicker color={value} onChange={event => onChange(event)} />
-        </React.Suspense>
-      </div>
-    </div>
-  )
-}
-
-function ColorEditorSlot(props: {
-  slot: {
-    name: string
-    value: string
-    description: string
-    set: (arg: string) => void
-  }
-}) {
-  const { slot } = props
-  return (
-    <ColorSlot
-      label={slot.name}
-      value={slot.value}
-      onChange={color => slot.set(color)}
-      TextFieldProps={{
-        helperText: slot.description,
-        fullWidth: true,
-      }}
-    />
-  )
-}
-
-export default observer(ColorEditorSlot)

package/src/ConfigurationEditorWidget/components/ConfigurationEditor.test.tsx

@@ -1,95 +0,0 @@
-import React from 'react'
-import { render } from '@testing-library/react'
-
-import { ConfigurationSchema } from '@jbrowse/core/configuration'
-import PluginManager from '@jbrowse/core/PluginManager'
-import Alignments from '@jbrowse/plugin-alignments'
-import SVG from '@jbrowse/plugin-svg'
-import { linearBasicDisplayConfigSchemaFactory } from '@jbrowse/plugin-linear-genome-view'
-import ConfigurationEditor from './ConfigurationEditor'
-
-describe('ConfigurationEditor widget', () => {
-  it('renders with just the required model elements', () => {
-    const TestSchema = ConfigurationSchema('TestThing', {
-      foo: {
-        type: 'string',
-        defaultValue: 'bar',
-      },
-    })
-
-    const { container } = render(
-      <ConfigurationEditor model={{ target: TestSchema.create() }} />,
-    )
-    expect(container.firstChild).toMatchSnapshot()
-  })
-
-  it('renders all the different types of built-in slots', () => {
-    const TestSchema = ConfigurationSchema('TestThing', {
-      stringTest: {
-        name: 'stringTest',
-        description: 'stringTest',
-        type: 'string',
-        defaultValue: 'string1',
-      },
-      fileLocationTest: {
-        name: 'fileLocationTest',
-        description: 'fileLocationTest',
-        type: 'fileLocation',
-        defaultValue: { uri: '/path/to/my.file', locationType: 'UriLocation' },
-      },
-      stringArrayTest: {
-        name: 'stringArrayTest',
-        description: 'stringArrayTest',
-        type: 'stringArray',
-        defaultValue: ['string1', 'string2'],
-      },
-      stringArrayMapTest: {
-        name: 'stringArrayMapTest',
-        description: 'stringArrayMapTest',
-        type: 'stringArrayMap',
-        defaultValue: { key1: ['string1', 'string2'] },
-      },
-      numberTest: {
-        name: 'numberTest',
-        description: 'numberTest',
-        type: 'number',
-        defaultValue: 88.5,
-      },
-      integerTest: {
-        name: 'integerTest',
-        description: 'integerTest',
-        type: 'integer',
-        defaultValue: 42,
-      },
-      colorTest: {
-        name: 'colorTest',
-        description: 'colorTest',
-        type: 'color',
-        defaultValue: '#396494',
-      },
-      booleanTest: {
-        name: 'booleanTest',
-        description: 'booleanTest',
-        type: 'boolean',
-        defaultValue: true,
-      },
-    })
-
-    const { container } = render(
-      <ConfigurationEditor model={{ target: TestSchema.create() }} />,
-    )
-    expect(container.firstChild).toMatchSnapshot()
-  })
-
-  it('renders with defaults of the PileupTrack schema', () => {
-    const pluginManager = new PluginManager([new Alignments(), new SVG()])
-    pluginManager.createPluggableElements()
-    pluginManager.configure()
-    const PileupDisplaySchema =
-      linearBasicDisplayConfigSchemaFactory(pluginManager)
-    const { container } = render(
-      <ConfigurationEditor model={{ target: PileupDisplaySchema.create() }} />,
-    )
-    expect(container.firstChild).toMatchSnapshot()
-  })
-})

package/src/ConfigurationEditorWidget/components/ConfigurationEditor.tsx

@@ -1,167 +0,0 @@
-import React from 'react'
-import {
-  readConfObject,
-  getTypeNamesFromExplicitlyTypedUnion,
-  isConfigurationSchemaType,
-  isConfigurationSlotType,
-  AnyConfigurationModel,
-} from '@jbrowse/core/configuration'
-import {
-  FormGroup,
-  Accordion,
-  AccordionDetails,
-  AccordionSummary,
-  Typography,
-} from '@mui/material'
-import { makeStyles } from 'tss-react/mui'
-import { observer } from 'mobx-react'
-import { getMembers, IAnyType } from 'mobx-state-tree'
-import { singular } from 'pluralize'
-
-// icons
-import ExpandMoreIcon from '@mui/icons-material/ExpandMore'
-
-// locals
-import SlotEditor from './SlotEditor'
-import TypeSelector from './TypeSelector'
-import { AbstractSessionModel } from '@jbrowse/core/util'
-
-const useStyles = makeStyles()(theme => ({
-  expandIcon: {
-    color: theme.palette.tertiary?.contrastText || '#fff',
-  },
-  root: {
-    padding: theme.spacing(1, 3, 1, 1),
-  },
-  expansionPanelDetails: {
-    display: 'block',
-    padding: theme.spacing(1),
-  },
-  accordion: {
-    border: `1px solid ${theme.palette.text.primary}`,
-  },
-  noOverflow: {
-    width: '100%',
-    overflowX: 'auto',
-  },
-}))
-
-const Member = observer(function (props: {
-  slotName: string
-  slotSchema: IAnyType
-  schema: AnyConfigurationModel
-  slot?: AnyConfigurationModel | AnyConfigurationModel[]
-  path?: string[]
-}) {
-  const { classes } = useStyles()
-  const {
-    slotName,
-    slotSchema,
-    schema,
-    slot = schema[slotName],
-    path = [],
-  } = props
-  let typeSelector
-  if (isConfigurationSchemaType(slotSchema)) {
-    if (slot.length) {
-      return slot.map((subslot: AnyConfigurationModel, slotIndex: number) => {
-        const key = `${singular(slotName)} ${slotIndex + 1}`
-        return <Member {...props} key={key} slot={subslot} slotName={key} />
-      })
-    }
-    // if this is an explicitly typed schema, make a type-selecting dropdown
-    // that can be used to change its type
-    const typeNameChoices = getTypeNamesFromExplicitlyTypedUnion(slotSchema)
-    if (typeNameChoices.length) {
-      typeSelector = (
-        <TypeSelector
-          typeNameChoices={typeNameChoices}
-          slotName={slotName}
-          slot={slot}
-          onChange={evt => {
-            if (evt.target.value !== slot.type) {
-              schema.setSubschema(slotName, { type: evt.target.value })
-            }
-          }}
-        />
-      )
-    }
-    return (
-      <Accordion defaultExpanded className={classes.accordion}>
-        <AccordionSummary
-          expandIcon={<ExpandMoreIcon className={classes.expandIcon} />}
-        >
-          <Typography>{[...path, slotName].join('➔')}</Typography>
-        </AccordionSummary>
-        <AccordionDetails className={classes.expansionPanelDetails}>
-          {typeSelector}
-          <FormGroup className={classes.noOverflow}>
-            <Schema schema={slot} path={[...path, slotName]} />
-          </FormGroup>
-        </AccordionDetails>
-      </Accordion>
-    )
-  }
-
-  if (isConfigurationSlotType(slotSchema)) {
-    // this is a regular config slot
-    return <SlotEditor key={slotName} slot={slot} slotSchema={slotSchema} />
-  }
-
-  return null
-})
-
-const Schema = observer(function ({
-  schema,
-  path = [],
-}: {
-  schema: AnyConfigurationModel
-  path?: string[]
-}) {
-  const properties = getMembers(schema).properties
-  return (
-    <>
-      {Object.entries(properties).map(([slotName, slotSchema]) => (
-        <Member
-          key={slotName}
-          slotName={slotName}
-          slotSchema={slotSchema}
-          path={path}
-          schema={schema}
-        />
-      ))}
-    </>
-  )
-})
-
-const ConfigurationEditor = observer(function ({
-  model,
-}: {
-  model: { target: AnyConfigurationModel }
-  session?: AbstractSessionModel
-}) {
-  const { classes } = useStyles()
-  // key forces a re-render, otherwise the same field can end up being used
-  // for different tracks since only the backing model changes for example
-  // see pr #804
-  const { target } = model
-  const key = target && readConfObject(target, 'trackId')
-  const name = target && readConfObject(target, 'name')
-  return (
-    <Accordion key={key} defaultExpanded className={classes.accordion}>
-      <AccordionSummary
-        expandIcon={<ExpandMoreIcon className={classes.expandIcon} />}
-      >
-        <Typography>{name ?? 'Configuration'}</Typography>
-      </AccordionSummary>
-      <AccordionDetails
-        className={classes.expansionPanelDetails}
-        data-testid="configEditor"
-      >
-        {!target ? 'no target set' : <Schema schema={target} />}
-      </AccordionDetails>
-    </Accordion>
-  )
-})
-
-export default ConfigurationEditor

package/src/ConfigurationEditorWidget/components/ConfigurationTextField.tsx

@@ -1,22 +0,0 @@
-import React from 'react'
-import { TextField, TextFieldProps } from '@mui/material'
-import { SanitizedHTML } from '@jbrowse/core/ui'
-
-// adds ability to have html in helperText. note that FormHelperTextProps is
-// div because the default is p which does not like div children
-export default function ConfigurationTextField(
-  props: { helperText?: string } & TextFieldProps,
-) {
-  const { helperText } = props
-  return (
-    <TextField
-      {...props}
-      helperText={<SanitizedHTML html={helperText || ''} />}
-      FormHelperTextProps={{
-        // @ts-expect-error
-        component: 'div',
-      }}
-      fullWidth
-    />
-  )
-}