@jbrowse/plugin-config 2.4.1 → 2.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ConfigurationEditorWidget/components/BooleanEditor.d.ts +0 -1
- package/dist/ConfigurationEditorWidget/components/CallbackEditor.d.ts +0 -1
- package/dist/ConfigurationEditorWidget/components/ColorEditor.d.ts +0 -1
- package/dist/ConfigurationEditorWidget/components/ConfigurationEditor.d.ts +0 -1
- package/dist/ConfigurationEditorWidget/components/ConfigurationEditor.js +4 -6
- package/dist/ConfigurationEditorWidget/components/ConfigurationEditor.js.map +1 -1
- package/dist/ConfigurationEditorWidget/components/ConfigurationTextField.d.ts +0 -1
- package/dist/ConfigurationEditorWidget/components/JsonEditor.d.ts +0 -1
- package/dist/ConfigurationEditorWidget/components/NumberEditor.d.ts +0 -1
- package/dist/ConfigurationEditorWidget/components/NumberMapEditor.d.ts +0 -1
- package/dist/ConfigurationEditorWidget/components/SlotEditor.d.ts +1 -4
- package/dist/ConfigurationEditorWidget/components/SlotEditor.js +1 -1
- package/dist/ConfigurationEditorWidget/components/SlotEditor.js.map +1 -1
- package/dist/ConfigurationEditorWidget/components/StringArrayEditor.d.ts +0 -1
- package/dist/ConfigurationEditorWidget/components/StringArrayMapEditor.d.ts +0 -1
- package/dist/ConfigurationEditorWidget/index.d.ts +1 -2
- package/dist/FromConfigAdapter/configSchema.d.ts +9 -1
- package/dist/FromConfigRegionsAdapter/configSchema.d.ts +9 -1
- package/dist/FromConfigSequenceAdapter/configSchema.d.ts +9 -1
- package/dist/RefNameAliasAdapter/configSchema.d.ts +21 -1
- package/esm/ConfigurationEditorWidget/components/BooleanEditor.d.ts +0 -1
- package/esm/ConfigurationEditorWidget/components/CallbackEditor.d.ts +0 -1
- package/esm/ConfigurationEditorWidget/components/ColorEditor.d.ts +0 -1
- package/esm/ConfigurationEditorWidget/components/ConfigurationEditor.d.ts +0 -1
- package/esm/ConfigurationEditorWidget/components/ConfigurationEditor.js +4 -6
- package/esm/ConfigurationEditorWidget/components/ConfigurationEditor.js.map +1 -1
- package/esm/ConfigurationEditorWidget/components/ConfigurationTextField.d.ts +0 -1
- package/esm/ConfigurationEditorWidget/components/JsonEditor.d.ts +0 -1
- package/esm/ConfigurationEditorWidget/components/NumberEditor.d.ts +0 -1
- package/esm/ConfigurationEditorWidget/components/NumberMapEditor.d.ts +0 -1
- package/esm/ConfigurationEditorWidget/components/SlotEditor.d.ts +1 -4
- package/esm/ConfigurationEditorWidget/components/SlotEditor.js +2 -2
- package/esm/ConfigurationEditorWidget/components/SlotEditor.js.map +1 -1
- package/esm/ConfigurationEditorWidget/components/StringArrayEditor.d.ts +0 -1
- package/esm/ConfigurationEditorWidget/components/StringArrayMapEditor.d.ts +0 -1
- package/esm/ConfigurationEditorWidget/index.d.ts +1 -2
- package/esm/FromConfigAdapter/configSchema.d.ts +9 -1
- package/esm/FromConfigRegionsAdapter/configSchema.d.ts +9 -1
- package/esm/FromConfigSequenceAdapter/configSchema.d.ts +9 -1
- package/esm/RefNameAliasAdapter/configSchema.d.ts +21 -1
- package/package.json +2 -2
- package/src/ConfigurationEditorWidget/components/ConfigurationEditor.tsx +13 -18
- package/src/ConfigurationEditorWidget/components/SlotEditor.tsx +9 -6
- package/src/ConfigurationEditorWidget/components/__snapshots__/ConfigurationEditor.test.tsx.snap +4 -1
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@@ -84,12 +84,10 @@ const ConfigurationEditor = (0, mobx_react_1.observer)(function ({ model, }) {
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const { target } = model;
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const key = target && (0, configuration_1.readConfObject)(target, 'trackId');
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const name = target && (0, configuration_1.readConfObject)(target, 'name');
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return (react_1.default.createElement(
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react_1.default.createElement(material_1.
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react_1.default.createElement(material_1.
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-
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react_1.default.createElement(material_1.AccordionDetails, { className: classes.expansionPanelDetails, "data-testid": "configEditor" }, !target ? 'no target set' : react_1.default.createElement(Schema, { schema: target }))),
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react_1.default.createElement("div", { style: { height: 300 } })));
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return (react_1.default.createElement(material_1.Accordion, { key: key, defaultExpanded: true, className: classes.accordion },
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react_1.default.createElement(material_1.AccordionSummary, { expandIcon: react_1.default.createElement(ExpandMore_1.default, { className: classes.expandIcon }) },
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react_1.default.createElement(material_1.Typography, null, name !== null && name !== void 0 ? name : 'Configuration')),
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react_1.default.createElement(material_1.AccordionDetails, { className: classes.expansionPanelDetails, "data-testid": "configEditor" }, !target ? 'no target set' : react_1.default.createElement(Schema, { schema: target }))));
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});
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exports.default = ConfigurationEditor;
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//# sourceMappingURL=ConfigurationEditor.js.map
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-
{"version":3,"file":"ConfigurationEditor.js","sourceRoot":"","sources":["../../../src/ConfigurationEditorWidget/components/ConfigurationEditor.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,+DAMoC;AACpC,4CAMsB;AACtB,uCAA0C;AAC1C,2CAAqC;AACrC,qDAAsD;AACtD,yCAAoC;AAEpC,QAAQ;AACR,gFAA2D;AAE3D,SAAS;AACT,8DAAqC;AACrC,kEAAyC;AAGzC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE;;IAAC,OAAA,CAAC;QACvC,UAAU,EAAE;YACV,KAAK,EAAE,CAAA,MAAA,KAAK,CAAC,OAAO,CAAC,QAAQ,0CAAE,YAAY,KAAI,MAAM;SACtD;QACD,IAAI,EAAE;YACJ,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;SACnC;QACD,qBAAqB,EAAE;YACrB,OAAO,EAAE,OAAO;YAChB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC1B;QACD,SAAS,EAAE;YACT,MAAM,EAAE,aAAa,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,EAAE;SAClD;QACD,UAAU,EAAE;YACV,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,MAAM;SAClB;KACF,CAAC,CAAA;CAAA,CAAC,CAAA;AAEH,MAAM,MAAM,GAAG,IAAA,qBAAQ,EAAC,UAAU,KAMjC;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EACJ,QAAQ,EACR,UAAU,EACV,MAAM,EACN,IAAI,GAAG,MAAM,CAAC,QAAQ,CAAC,EACvB,IAAI,GAAG,EAAE,GACV,GAAG,KAAK,CAAA;IACT,IAAI,YAAY,CAAA;IAChB,IAAI,IAAA,yCAAyB,EAAC,UAAU,CAAC,EAAE;QACzC,IAAI,IAAI,CAAC,MAAM,EAAE;YACf,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,OAA8B,EAAE,SAAiB,EAAE,EAAE;gBACpE,MAAM,GAAG,GAAG,GAAG,IAAA,oBAAQ,EAAC,QAAQ,CAAC,IAAI,SAAS,GAAG,CAAC,EAAE,CAAA;gBACpD,OAAO,8BAAC,MAAM,OAAK,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,GAAI,CAAA;YACtE,CAAC,CAAC,CAAA;SACH;QACD,wEAAwE;QACxE,sCAAsC;QACtC,MAAM,eAAe,GAAG,IAAA,oDAAoC,EAAC,UAAU,CAAC,CAAA;QACxE,IAAI,eAAe,CAAC,MAAM,EAAE;YAC1B,YAAY,GAAG,CACb,8BAAC,sBAAY,IACX,eAAe,EAAE,eAAe,EAChC,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,IAAI,EACV,QAAQ,EAAE,GAAG,CAAC,EAAE;oBACd,IAAI,GAAG,CAAC,MAAM,CAAC,KAAK,KAAK,IAAI,CAAC,IAAI,EAAE;wBAClC,MAAM,CAAC,YAAY,CAAC,QAAQ,EAAE,EAAE,IAAI,EAAE,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAA;qBAC1D;gBACH,CAAC,GACD,CACH,CAAA;SACF;QACD,OAAO,CACL,8BAAC,oBAAS,IAAC,eAAe,QAAC,SAAS,EAAE,OAAO,CAAC,SAAS;YACrD,8BAAC,2BAAgB,IACf,UAAU,EAAE,8BAAC,oBAAc,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU,GAAI;gBAE7D,8BAAC,qBAAU,QAAE,CAAC,GAAG,IAAI,EAAE,QAAQ,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAc,CACvC;YACnB,8BAAC,2BAAgB,IAAC,SAAS,EAAE,OAAO,CAAC,qBAAqB;gBACvD,YAAY;gBACb,8BAAC,oBAAS,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU;oBACtC,8BAAC,MAAM,IAAC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,GAAG,IAAI,EAAE,QAAQ,CAAC,GAAI,CACzC,CACK,CACT,CACb,CAAA;KACF;IAED,IAAI,IAAA,uCAAuB,EAAC,UAAU,CAAC,EAAE;QACvC,gCAAgC;QAChC,OAAO,8BAAC,oBAAU,IAAC,GAAG,EAAE,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,GAAI,CAAA;KACzE;IAED,OAAO,IAAI,CAAA;AACb,CAAC,CAAC,CAAA;AAEF,MAAM,MAAM,GAAG,IAAA,qBAAQ,EAAC,UAAU,EAChC,MAAM,EACN,IAAI,GAAG,EAAE,GAIV;IACC,MAAM,UAAU,GAAG,IAAA,4BAAU,EAAC,MAAM,CAAC,CAAC,UAAU,CAAA;IAChD,OAAO,CACL,8DACG,MAAM,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,EAAE,EAAE,CAAC,CAC1D,8BAAC,MAAM,IACL,GAAG,EAAE,QAAQ,EACb,QAAQ,EAAE,QAAQ,EAClB,UAAU,EAAE,UAAU,EACtB,IAAI,EAAE,IAAI,EACV,MAAM,EAAE,MAAM,GACd,CACH,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAAC,UAAU,EAC7C,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,yEAAyE;IACzE,wEAAwE;IACxE,cAAc;IACd,MAAM,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;IACxB,MAAM,GAAG,GAAG,MAAM,IAAI,IAAA,8BAAc,EAAC,MAAM,EAAE,SAAS,CAAC,CAAA;IACvD,MAAM,IAAI,GAAG,MAAM,IAAI,IAAA,8BAAc,EAAC,MAAM,EAAE,MAAM,CAAC,CAAA;IACrD,OAAO,CACL
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{"version":3,"file":"ConfigurationEditor.js","sourceRoot":"","sources":["../../../src/ConfigurationEditorWidget/components/ConfigurationEditor.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,+DAMoC;AACpC,4CAMsB;AACtB,uCAA0C;AAC1C,2CAAqC;AACrC,qDAAsD;AACtD,yCAAoC;AAEpC,QAAQ;AACR,gFAA2D;AAE3D,SAAS;AACT,8DAAqC;AACrC,kEAAyC;AAGzC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE;;IAAC,OAAA,CAAC;QACvC,UAAU,EAAE;YACV,KAAK,EAAE,CAAA,MAAA,KAAK,CAAC,OAAO,CAAC,QAAQ,0CAAE,YAAY,KAAI,MAAM;SACtD;QACD,IAAI,EAAE;YACJ,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;SACnC;QACD,qBAAqB,EAAE;YACrB,OAAO,EAAE,OAAO;YAChB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC1B;QACD,SAAS,EAAE;YACT,MAAM,EAAE,aAAa,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,EAAE;SAClD;QACD,UAAU,EAAE;YACV,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,MAAM;SAClB;KACF,CAAC,CAAA;CAAA,CAAC,CAAA;AAEH,MAAM,MAAM,GAAG,IAAA,qBAAQ,EAAC,UAAU,KAMjC;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EACJ,QAAQ,EACR,UAAU,EACV,MAAM,EACN,IAAI,GAAG,MAAM,CAAC,QAAQ,CAAC,EACvB,IAAI,GAAG,EAAE,GACV,GAAG,KAAK,CAAA;IACT,IAAI,YAAY,CAAA;IAChB,IAAI,IAAA,yCAAyB,EAAC,UAAU,CAAC,EAAE;QACzC,IAAI,IAAI,CAAC,MAAM,EAAE;YACf,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,OAA8B,EAAE,SAAiB,EAAE,EAAE;gBACpE,MAAM,GAAG,GAAG,GAAG,IAAA,oBAAQ,EAAC,QAAQ,CAAC,IAAI,SAAS,GAAG,CAAC,EAAE,CAAA;gBACpD,OAAO,8BAAC,MAAM,OAAK,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,GAAI,CAAA;YACtE,CAAC,CAAC,CAAA;SACH;QACD,wEAAwE;QACxE,sCAAsC;QACtC,MAAM,eAAe,GAAG,IAAA,oDAAoC,EAAC,UAAU,CAAC,CAAA;QACxE,IAAI,eAAe,CAAC,MAAM,EAAE;YAC1B,YAAY,GAAG,CACb,8BAAC,sBAAY,IACX,eAAe,EAAE,eAAe,EAChC,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,IAAI,EACV,QAAQ,EAAE,GAAG,CAAC,EAAE;oBACd,IAAI,GAAG,CAAC,MAAM,CAAC,KAAK,KAAK,IAAI,CAAC,IAAI,EAAE;wBAClC,MAAM,CAAC,YAAY,CAAC,QAAQ,EAAE,EAAE,IAAI,EAAE,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAA;qBAC1D;gBACH,CAAC,GACD,CACH,CAAA;SACF;QACD,OAAO,CACL,8BAAC,oBAAS,IAAC,eAAe,QAAC,SAAS,EAAE,OAAO,CAAC,SAAS;YACrD,8BAAC,2BAAgB,IACf,UAAU,EAAE,8BAAC,oBAAc,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU,GAAI;gBAE7D,8BAAC,qBAAU,QAAE,CAAC,GAAG,IAAI,EAAE,QAAQ,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAc,CACvC;YACnB,8BAAC,2BAAgB,IAAC,SAAS,EAAE,OAAO,CAAC,qBAAqB;gBACvD,YAAY;gBACb,8BAAC,oBAAS,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU;oBACtC,8BAAC,MAAM,IAAC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,GAAG,IAAI,EAAE,QAAQ,CAAC,GAAI,CACzC,CACK,CACT,CACb,CAAA;KACF;IAED,IAAI,IAAA,uCAAuB,EAAC,UAAU,CAAC,EAAE;QACvC,gCAAgC;QAChC,OAAO,8BAAC,oBAAU,IAAC,GAAG,EAAE,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,GAAI,CAAA;KACzE;IAED,OAAO,IAAI,CAAA;AACb,CAAC,CAAC,CAAA;AAEF,MAAM,MAAM,GAAG,IAAA,qBAAQ,EAAC,UAAU,EAChC,MAAM,EACN,IAAI,GAAG,EAAE,GAIV;IACC,MAAM,UAAU,GAAG,IAAA,4BAAU,EAAC,MAAM,CAAC,CAAC,UAAU,CAAA;IAChD,OAAO,CACL,8DACG,MAAM,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,EAAE,EAAE,CAAC,CAC1D,8BAAC,MAAM,IACL,GAAG,EAAE,QAAQ,EACb,QAAQ,EAAE,QAAQ,EAClB,UAAU,EAAE,UAAU,EACtB,IAAI,EAAE,IAAI,EACV,MAAM,EAAE,MAAM,GACd,CACH,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAAC,UAAU,EAC7C,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,yEAAyE;IACzE,wEAAwE;IACxE,cAAc;IACd,MAAM,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;IACxB,MAAM,GAAG,GAAG,MAAM,IAAI,IAAA,8BAAc,EAAC,MAAM,EAAE,SAAS,CAAC,CAAA;IACvD,MAAM,IAAI,GAAG,MAAM,IAAI,IAAA,8BAAc,EAAC,MAAM,EAAE,MAAM,CAAC,CAAA;IACrD,OAAO,CACL,8BAAC,oBAAS,IAAC,GAAG,EAAE,GAAG,EAAE,eAAe,QAAC,SAAS,EAAE,OAAO,CAAC,SAAS;QAC/D,8BAAC,2BAAgB,IACf,UAAU,EAAE,8BAAC,oBAAc,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU,GAAI;YAE7D,8BAAC,qBAAU,QAAE,IAAI,aAAJ,IAAI,cAAJ,IAAI,GAAI,eAAe,CAAc,CACjC;QACnB,8BAAC,2BAAgB,IACf,SAAS,EAAE,OAAO,CAAC,qBAAqB,iBAC5B,cAAc,IAEzB,CAAC,MAAM,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,8BAAC,MAAM,IAAC,MAAM,EAAE,MAAM,GAAI,CACtC,CACT,CACb,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,mBAAmB,CAAA"}
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{"version":3,"file":"SlotEditor.js","sourceRoot":"","sources":["../../../src/ConfigurationEditorWidget/components/SlotEditor.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAkD;AAClD,2CAAqC;AACrC,qDAA8D;AAC9D,6CAAyD;AACzD,yCAA+C;AAC/C,sEAI0C;AAC1C,4CAA+E;AAC/E,uCAA0C;AAE1C,QAAQ;AACR,oGAA+E;AAE/E,SAAS;AACT,4EAAmD;AACnD,sEAA6C;AAC7C,gEAAuC;AACvC,8DAAqC;AACrC,kFAAyD;AACzD,sFAA6D;AAC7D,wEAA+C;AAC/C,kEAAyC;AACzC,oEAA2C;
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@@ -1,6 +1,5 @@
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1
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-
/// <reference types="react" />
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2
1
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export { default as stateModelFactory } from './model';
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-
export declare const configSchema: import("@jbrowse/core/configuration").
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+
export declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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4
3
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export declare const HeadingComponent: ({ model }: {
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5
4
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model?: {
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6
5
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target: {
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@@ -1,2 +1,10 @@
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1
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-
declare const configSchema: import("@jbrowse/core/configuration").
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1
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+
declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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2
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+
/**
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3
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+
* #slot
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4
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+
*/
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features: {
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6
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type: string;
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7
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defaultValue: never[];
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8
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};
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9
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+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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2
10
|
export default configSchema;
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@@ -1,2 +1,10 @@
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1
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-
declare const regionsConfigSchema: import("@jbrowse/core/configuration").
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1
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+
declare const regionsConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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2
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+
/**
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3
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+
* #slot
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4
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+
*/
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5
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+
features: {
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6
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+
type: string;
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7
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defaultValue: never[];
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8
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+
};
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9
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+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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2
10
|
export default regionsConfigSchema;
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@@ -1,2 +1,10 @@
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1
|
-
declare const sequenceConfigSchema: import("@jbrowse/core/configuration").
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1
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+
declare const sequenceConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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2
|
+
/**
|
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3
|
+
* #slot
|
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4
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+
*/
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5
|
+
features: {
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6
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+
type: string;
|
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7
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+
defaultValue: never[];
|
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8
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+
};
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9
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+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
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2
10
|
export default sequenceConfigSchema;
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@@ -1,2 +1,22 @@
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|
1
|
-
declare const RefNameAliasAdapter: import("@jbrowse/core/configuration").
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1
|
+
declare const RefNameAliasAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
+
/**
|
|
3
|
+
* #slot
|
|
4
|
+
*/
|
|
5
|
+
location: {
|
|
6
|
+
type: string;
|
|
7
|
+
defaultValue: {
|
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8
|
+
uri: string;
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9
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+
locationType: string;
|
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10
|
+
};
|
|
11
|
+
};
|
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12
|
+
/**
|
|
13
|
+
* #slot
|
|
14
|
+
* by default, the "ref names that match the fasta" are assumed to be in the
|
|
15
|
+
* first column (0), change this variable if needed
|
|
16
|
+
*/
|
|
17
|
+
refNameColumn: {
|
|
18
|
+
type: string;
|
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19
|
+
defaultValue: number;
|
|
20
|
+
};
|
|
21
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
2
22
|
export default RefNameAliasAdapter;
|
|
@@ -79,12 +79,10 @@ const ConfigurationEditor = observer(function ({ model, }) {
|
|
|
79
79
|
const { target } = model;
|
|
80
80
|
const key = target && readConfObject(target, 'trackId');
|
|
81
81
|
const name = target && readConfObject(target, 'name');
|
|
82
|
-
return (React.createElement(
|
|
83
|
-
React.createElement(
|
|
84
|
-
React.createElement(
|
|
85
|
-
|
|
86
|
-
React.createElement(AccordionDetails, { className: classes.expansionPanelDetails, "data-testid": "configEditor" }, !target ? 'no target set' : React.createElement(Schema, { schema: target }))),
|
|
87
|
-
React.createElement("div", { style: { height: 300 } })));
|
|
82
|
+
return (React.createElement(Accordion, { key: key, defaultExpanded: true, className: classes.accordion },
|
|
83
|
+
React.createElement(AccordionSummary, { expandIcon: React.createElement(ExpandMoreIcon, { className: classes.expandIcon }) },
|
|
84
|
+
React.createElement(Typography, null, name !== null && name !== void 0 ? name : 'Configuration')),
|
|
85
|
+
React.createElement(AccordionDetails, { className: classes.expansionPanelDetails, "data-testid": "configEditor" }, !target ? 'no target set' : React.createElement(Schema, { schema: target }))));
|
|
88
86
|
});
|
|
89
87
|
export default ConfigurationEditor;
|
|
90
88
|
//# sourceMappingURL=ConfigurationEditor.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ConfigurationEditor.js","sourceRoot":"","sources":["../../../src/ConfigurationEditorWidget/components/ConfigurationEditor.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,cAAc,EACd,oCAAoC,EACpC,yBAAyB,EACzB,uBAAuB,GAExB,MAAM,6BAA6B,CAAA;AACpC,OAAO,EACL,SAAS,EACT,SAAS,EACT,gBAAgB,EAChB,gBAAgB,EAChB,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAY,MAAM,iBAAiB,CAAA;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAA;AAEpC,QAAQ;AACR,OAAO,cAAc,MAAM,gCAAgC,CAAA;AAE3D,SAAS;AACT,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAGzC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE;;IAAC,OAAA,CAAC;QACvC,UAAU,EAAE;YACV,KAAK,EAAE,CAAA,MAAA,KAAK,CAAC,OAAO,CAAC,QAAQ,0CAAE,YAAY,KAAI,MAAM;SACtD;QACD,IAAI,EAAE;YACJ,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;SACnC;QACD,qBAAqB,EAAE;YACrB,OAAO,EAAE,OAAO;YAChB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC1B;QACD,SAAS,EAAE;YACT,MAAM,EAAE,aAAa,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,EAAE;SAClD;QACD,UAAU,EAAE;YACV,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,MAAM;SAClB;KACF,CAAC,CAAA;CAAA,CAAC,CAAA;AAEH,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,KAMjC;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EACJ,QAAQ,EACR,UAAU,EACV,MAAM,EACN,IAAI,GAAG,MAAM,CAAC,QAAQ,CAAC,EACvB,IAAI,GAAG,EAAE,GACV,GAAG,KAAK,CAAA;IACT,IAAI,YAAY,CAAA;IAChB,IAAI,yBAAyB,CAAC,UAAU,CAAC,EAAE;QACzC,IAAI,IAAI,CAAC,MAAM,EAAE;YACf,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,OAA8B,EAAE,SAAiB,EAAE,EAAE;gBACpE,MAAM,GAAG,GAAG,GAAG,QAAQ,CAAC,QAAQ,CAAC,IAAI,SAAS,GAAG,CAAC,EAAE,CAAA;gBACpD,OAAO,oBAAC,MAAM,OAAK,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,GAAI,CAAA;YACtE,CAAC,CAAC,CAAA;SACH;QACD,wEAAwE;QACxE,sCAAsC;QACtC,MAAM,eAAe,GAAG,oCAAoC,CAAC,UAAU,CAAC,CAAA;QACxE,IAAI,eAAe,CAAC,MAAM,EAAE;YAC1B,YAAY,GAAG,CACb,oBAAC,YAAY,IACX,eAAe,EAAE,eAAe,EAChC,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,IAAI,EACV,QAAQ,EAAE,GAAG,CAAC,EAAE;oBACd,IAAI,GAAG,CAAC,MAAM,CAAC,KAAK,KAAK,IAAI,CAAC,IAAI,EAAE;wBAClC,MAAM,CAAC,YAAY,CAAC,QAAQ,EAAE,EAAE,IAAI,EAAE,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAA;qBAC1D;gBACH,CAAC,GACD,CACH,CAAA;SACF;QACD,OAAO,CACL,oBAAC,SAAS,IAAC,eAAe,QAAC,SAAS,EAAE,OAAO,CAAC,SAAS;YACrD,oBAAC,gBAAgB,IACf,UAAU,EAAE,oBAAC,cAAc,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU,GAAI;gBAE7D,oBAAC,UAAU,QAAE,CAAC,GAAG,IAAI,EAAE,QAAQ,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAc,CACvC;YACnB,oBAAC,gBAAgB,IAAC,SAAS,EAAE,OAAO,CAAC,qBAAqB;gBACvD,YAAY;gBACb,oBAAC,SAAS,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU;oBACtC,oBAAC,MAAM,IAAC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,GAAG,IAAI,EAAE,QAAQ,CAAC,GAAI,CACzC,CACK,CACT,CACb,CAAA;KACF;IAED,IAAI,uBAAuB,CAAC,UAAU,CAAC,EAAE;QACvC,gCAAgC;QAChC,OAAO,oBAAC,UAAU,IAAC,GAAG,EAAE,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,GAAI,CAAA;KACzE;IAED,OAAO,IAAI,CAAA;AACb,CAAC,CAAC,CAAA;AAEF,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,EAChC,MAAM,EACN,IAAI,GAAG,EAAE,GAIV;IACC,MAAM,UAAU,GAAG,UAAU,CAAC,MAAM,CAAC,CAAC,UAAU,CAAA;IAChD,OAAO,CACL,0CACG,MAAM,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,EAAE,EAAE,CAAC,CAC1D,oBAAC,MAAM,IACL,GAAG,EAAE,QAAQ,EACb,QAAQ,EAAE,QAAQ,EAClB,UAAU,EAAE,UAAU,EACtB,IAAI,EAAE,IAAI,EACV,MAAM,EAAE,MAAM,GACd,CACH,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,mBAAmB,GAAG,QAAQ,CAAC,UAAU,EAC7C,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,yEAAyE;IACzE,wEAAwE;IACxE,cAAc;IACd,MAAM,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;IACxB,MAAM,GAAG,GAAG,MAAM,IAAI,cAAc,CAAC,MAAM,EAAE,SAAS,CAAC,CAAA;IACvD,MAAM,IAAI,GAAG,MAAM,IAAI,cAAc,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;IACrD,OAAO,CACL
|
|
1
|
+
{"version":3,"file":"ConfigurationEditor.js","sourceRoot":"","sources":["../../../src/ConfigurationEditorWidget/components/ConfigurationEditor.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,cAAc,EACd,oCAAoC,EACpC,yBAAyB,EACzB,uBAAuB,GAExB,MAAM,6BAA6B,CAAA;AACpC,OAAO,EACL,SAAS,EACT,SAAS,EACT,gBAAgB,EAChB,gBAAgB,EAChB,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAY,MAAM,iBAAiB,CAAA;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAA;AAEpC,QAAQ;AACR,OAAO,cAAc,MAAM,gCAAgC,CAAA;AAE3D,SAAS;AACT,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAGzC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE;;IAAC,OAAA,CAAC;QACvC,UAAU,EAAE;YACV,KAAK,EAAE,CAAA,MAAA,KAAK,CAAC,OAAO,CAAC,QAAQ,0CAAE,YAAY,KAAI,MAAM;SACtD;QACD,IAAI,EAAE;YACJ,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;SACnC;QACD,qBAAqB,EAAE;YACrB,OAAO,EAAE,OAAO;YAChB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC1B;QACD,SAAS,EAAE;YACT,MAAM,EAAE,aAAa,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,EAAE;SAClD;QACD,UAAU,EAAE;YACV,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,MAAM;SAClB;KACF,CAAC,CAAA;CAAA,CAAC,CAAA;AAEH,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,KAMjC;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EACJ,QAAQ,EACR,UAAU,EACV,MAAM,EACN,IAAI,GAAG,MAAM,CAAC,QAAQ,CAAC,EACvB,IAAI,GAAG,EAAE,GACV,GAAG,KAAK,CAAA;IACT,IAAI,YAAY,CAAA;IAChB,IAAI,yBAAyB,CAAC,UAAU,CAAC,EAAE;QACzC,IAAI,IAAI,CAAC,MAAM,EAAE;YACf,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,OAA8B,EAAE,SAAiB,EAAE,EAAE;gBACpE,MAAM,GAAG,GAAG,GAAG,QAAQ,CAAC,QAAQ,CAAC,IAAI,SAAS,GAAG,CAAC,EAAE,CAAA;gBACpD,OAAO,oBAAC,MAAM,OAAK,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,GAAI,CAAA;YACtE,CAAC,CAAC,CAAA;SACH;QACD,wEAAwE;QACxE,sCAAsC;QACtC,MAAM,eAAe,GAAG,oCAAoC,CAAC,UAAU,CAAC,CAAA;QACxE,IAAI,eAAe,CAAC,MAAM,EAAE;YAC1B,YAAY,GAAG,CACb,oBAAC,YAAY,IACX,eAAe,EAAE,eAAe,EAChC,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,IAAI,EACV,QAAQ,EAAE,GAAG,CAAC,EAAE;oBACd,IAAI,GAAG,CAAC,MAAM,CAAC,KAAK,KAAK,IAAI,CAAC,IAAI,EAAE;wBAClC,MAAM,CAAC,YAAY,CAAC,QAAQ,EAAE,EAAE,IAAI,EAAE,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAA;qBAC1D;gBACH,CAAC,GACD,CACH,CAAA;SACF;QACD,OAAO,CACL,oBAAC,SAAS,IAAC,eAAe,QAAC,SAAS,EAAE,OAAO,CAAC,SAAS;YACrD,oBAAC,gBAAgB,IACf,UAAU,EAAE,oBAAC,cAAc,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU,GAAI;gBAE7D,oBAAC,UAAU,QAAE,CAAC,GAAG,IAAI,EAAE,QAAQ,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAc,CACvC;YACnB,oBAAC,gBAAgB,IAAC,SAAS,EAAE,OAAO,CAAC,qBAAqB;gBACvD,YAAY;gBACb,oBAAC,SAAS,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU;oBACtC,oBAAC,MAAM,IAAC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,GAAG,IAAI,EAAE,QAAQ,CAAC,GAAI,CACzC,CACK,CACT,CACb,CAAA;KACF;IAED,IAAI,uBAAuB,CAAC,UAAU,CAAC,EAAE;QACvC,gCAAgC;QAChC,OAAO,oBAAC,UAAU,IAAC,GAAG,EAAE,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,GAAI,CAAA;KACzE;IAED,OAAO,IAAI,CAAA;AACb,CAAC,CAAC,CAAA;AAEF,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,EAChC,MAAM,EACN,IAAI,GAAG,EAAE,GAIV;IACC,MAAM,UAAU,GAAG,UAAU,CAAC,MAAM,CAAC,CAAC,UAAU,CAAA;IAChD,OAAO,CACL,0CACG,MAAM,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,EAAE,EAAE,CAAC,CAC1D,oBAAC,MAAM,IACL,GAAG,EAAE,QAAQ,EACb,QAAQ,EAAE,QAAQ,EAClB,UAAU,EAAE,UAAU,EACtB,IAAI,EAAE,IAAI,EACV,MAAM,EAAE,MAAM,GACd,CACH,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,mBAAmB,GAAG,QAAQ,CAAC,UAAU,EAC7C,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,yEAAyE;IACzE,wEAAwE;IACxE,cAAc;IACd,MAAM,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;IACxB,MAAM,GAAG,GAAG,MAAM,IAAI,cAAc,CAAC,MAAM,EAAE,SAAS,CAAC,CAAA;IACvD,MAAM,IAAI,GAAG,MAAM,IAAI,cAAc,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;IACrD,OAAO,CACL,oBAAC,SAAS,IAAC,GAAG,EAAE,GAAG,EAAE,eAAe,QAAC,SAAS,EAAE,OAAO,CAAC,SAAS;QAC/D,oBAAC,gBAAgB,IACf,UAAU,EAAE,oBAAC,cAAc,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU,GAAI;YAE7D,oBAAC,UAAU,QAAE,IAAI,aAAJ,IAAI,cAAJ,IAAI,GAAI,eAAe,CAAc,CACjC;QACnB,oBAAC,gBAAgB,IACf,SAAS,EAAE,OAAO,CAAC,qBAAqB,iBAC5B,cAAc,IAEzB,CAAC,MAAM,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,oBAAC,MAAM,IAAC,MAAM,EAAE,MAAM,GAAI,CACtC,CACT,CACb,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,mBAAmB,CAAA"}
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@@ -1,9 +1,6 @@
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|
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1
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-
/// <reference types="react" />
|
|
2
1
|
import { IAnyType } from 'mobx-state-tree';
|
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3
2
|
export declare const useSlotEditorStyles: (params: void, styleOverrides?: {
|
|
4
|
-
props:
|
|
5
|
-
classes?: Record<string, string> | undefined;
|
|
6
|
-
} & Record<string, unknown>;
|
|
3
|
+
props: any;
|
|
7
4
|
ownerState?: Record<string, unknown> | undefined;
|
|
8
5
|
} | undefined) => {
|
|
9
6
|
classes: Record<"paper" | "paperContent" | "slotModeSwitch", string>;
|
|
@@ -3,7 +3,7 @@ import { observer } from 'mobx-react';
|
|
|
3
3
|
import { getPropertyMembers } from 'mobx-state-tree';
|
|
4
4
|
import { getEnv } from '@jbrowse/core/util';
|
|
5
5
|
import { FileSelector } from '@jbrowse/core/ui';
|
|
6
|
-
import {
|
|
6
|
+
import { getSubType, getUnionSubTypes, } from '@jbrowse/core/util/mst-reflection';
|
|
7
7
|
import { IconButton, MenuItem, Paper, SvgIcon, TextField } from '@mui/material';
|
|
8
8
|
import { makeStyles } from 'tss-react/mui';
|
|
9
9
|
// icons
|
|
@@ -35,7 +35,7 @@ const IntegerEditor = observer(({ slot, }) => {
|
|
|
35
35
|
});
|
|
36
36
|
const StringEnumEditor = observer(function ({ slot, slotSchema, }) {
|
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37
37
|
const p = getPropertyMembers(getSubType(slotSchema));
|
|
38
|
-
const choices = getUnionSubTypes(getUnionSubTypes(getSubType(
|
|
38
|
+
const choices = getUnionSubTypes(getUnionSubTypes(getSubType(p.properties.value))[1]).map(t => t.value);
|
|
39
39
|
return (React.createElement(ConfigurationTextField, { value: slot.value, label: slot.name, select: true, helperText: slot.description, onChange: evt => slot.set(evt.target.value) }, choices.map(str => (React.createElement(MenuItem, { key: str, value: str }, str)))));
|
|
40
40
|
});
|
|
41
41
|
const FileSelectorWrapper = observer(function ({ slot, }) {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"SlotEditor.js","sourceRoot":"","sources":["../../../src/ConfigurationEditorWidget/components/SlotEditor.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,kBAAkB,EAAY,MAAM,iBAAiB,CAAA;AAC9D,OAAO,EAAE,MAAM,EAAgB,MAAM,oBAAoB,CAAA;AACzD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EACL,
|
|
1
|
+
{"version":3,"file":"SlotEditor.js","sourceRoot":"","sources":["../../../src/ConfigurationEditorWidget/components/SlotEditor.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,kBAAkB,EAAY,MAAM,iBAAiB,CAAA;AAC9D,OAAO,EAAE,MAAM,EAAgB,MAAM,oBAAoB,CAAA;AACzD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EACL,UAAU,EACV,gBAAgB,GAEjB,MAAM,mCAAmC,CAAA;AAC1C,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,KAAK,EAAE,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AAC/E,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,QAAQ;AACR,OAAO,wBAAwB,MAAM,0CAA0C,CAAA;AAE/E,SAAS;AACT,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AACnD,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,WAAW,MAAM,eAAe,CAAA;AACvC,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AACzD,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,aAAa,MAAM,iBAAiB,CAAA;AAM3C,MAAM,YAAY,GAAG,QAAQ,CAC3B,CAAC,EACC,IAAI,GAQL,EAAE,EAAE,CAAC,CACJ,oBAAC,sBAAsB,IACrB,KAAK,EAAE,IAAI,CAAC,IAAI,EAChB,UAAU,EAAE,IAAI,CAAC,WAAW,EAC5B,KAAK,EAAE,IAAI,CAAC,KAAK,EACjB,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,GAC3C,CACH,CACF,CAAA;AAED,MAAM,UAAU,GAAG,QAAQ,CACzB,CAAC,EACC,IAAI,GAQL,EAAE,EAAE,CAAC,CACJ,oBAAC,SAAS,IACR,KAAK,EAAE,IAAI,CAAC,IAAI,EAChB,UAAU,EAAE,IAAI,CAAC,WAAW,EAC5B,SAAS,QACT,KAAK,EAAE,IAAI,CAAC,KAAK,EACjB,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,GAC3C,CACH,CACF,CAAA;AAED,4CAA4C;AAC5C,MAAM,WAAW,GAAG,GAAG,EAAE,CAAC,CACxB,oBAAC,OAAO;IACN,8BAAM,CAAC,EAAC,qYAAqY,GAAG,CACxY,CACX,CAAA;AAED,MAAM,aAAa,GAAG,QAAQ,CAC5B,CAAC,EACC,IAAI,GAQL,EAAE,EAAE;IACH,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IAC1C,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,MAAM,CAAC,QAAQ,CAAC,GAAG,EAAE,EAAE,CAAC,CAAA;QACpC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE;YACtB,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAA;SACd;IACH,CAAC,EAAE,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,CAAA;IACf,OAAO,CACL,oBAAC,sBAAsB,IACrB,KAAK,EAAE,IAAI,CAAC,IAAI,EAChB,UAAU,EAAE,IAAI,CAAC,WAAW,EAC5B,KAAK,EAAE,GAAG,EACV,IAAI,EAAC,QAAQ,EACb,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,GACzC,CACH,CAAA;AACH,CAAC,CACF,CAAA;AAED,MAAM,gBAAgB,GAAG,QAAQ,CAAC,UAAU,EAC1C,IAAI,EACJ,UAAU,GAIX;IACC,MAAM,CAAC,GAAG,kBAAkB,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC,CAAA;IACpD,MAAM,OAAO,GAAG,gBAAgB,CAC9B,gBAAgB,CAAC,UAAU,CAAC,CAAC,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CACpD,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAE,CAA0B,CAAC,KAAK,CAAC,CAAA;IAE7C,OAAO,CACL,oBAAC,sBAAsB,IACrB,KAAK,EAAE,IAAI,CAAC,KAAK,EACjB,KAAK,EAAE,IAAI,CAAC,IAAI,EAChB,MAAM,QACN,UAAU,EAAE,IAAI,CAAC,WAAW,EAC5B,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,IAE1C,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAClB,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACqB,CAC1B,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,mBAAmB,GAAG,QAAQ,CAAC,UAAU,EAC7C,IAAI,GAQL;;IACC,OAAO,CACL,oBAAC,YAAY,IACX,QAAQ,EAAE,IAAI,CAAC,KAAK,EACpB,WAAW,EAAE,QAAQ,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,EAC3C,IAAI,EAAE,IAAI,CAAC,IAAI,EACf,WAAW,EAAE,IAAI,CAAC,WAAW,EAC7B,SAAS,EAAE,MAAA,MAAM,CAAC,IAAI,CAAC,CAAC,aAAa,0CAAE,SAAS,GAChD,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,eAAe,GAAG;IACtB,MAAM,EAAE,YAAY;IACpB,IAAI,EAAE,UAAU;IAChB,YAAY,EAAE,mBAAmB;IACjC,WAAW,EAAE,iBAAiB;IAC9B,cAAc,EAAE,oBAAoB;IACpC,SAAS,EAAE,eAAe;IAC1B,MAAM,EAAE,YAAY;IACpB,OAAO,EAAE,aAAa;IACtB,KAAK,EAAE,WAAW;IAClB,UAAU,EAAE,gBAAgB;IAC5B,OAAO,EAAE,aAAa;IACtB,MAAM,EAAE,UAAU;IAClB,mBAAmB,EAAE,UAAU;CAChC,CAAA;AAED,MAAM,CAAC,MAAM,mBAAmB,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACxD,KAAK,EAAE;QACL,OAAO,EAAE,MAAM;QACf,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC9B,QAAQ,EAAE,UAAU;KACrB;IACD,YAAY,EAAE;QACZ,KAAK,EAAE,MAAM;KACd;IACD,cAAc,EAAE;QACd,KAAK,EAAE,EAAE;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,SAAS,CAAC,KAAK;QACzC,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,QAAQ;QACxB,UAAU,EAAE,QAAQ;KACrB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,UAAU,GAAG,QAAQ;AACzB,8DAA8D;AAC9D,CAAC,EAAE,IAAI,EAAE,UAAU,EAAuC,EAAE,EAAE;IAC5D,MAAM,EAAE,OAAO,EAAE,GAAG,mBAAmB,EAAE,CAAA;IACzC,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAA;IACrB,IAAI,cAAc,GAAG,IAAI,CAAC,UAAU;QAClC,CAAC,CAAC,cAAc;QAChB,CAAC,CAAC,mBAAmB;YACnB,eAAe,CAAC,IAAI,CAAC,CAAA;IACzB,IAAI,CAAC,cAAc,EAAE;QACnB,OAAO,CAAC,IAAI,CAAC,8BAA8B,IAAI,qBAAqB,CAAC,CAAA;QACrE,cAAc,GAAG,YAAY,CAAA;KAC9B;IACD,IAAI,CAAC,CAAC,IAAI,IAAI,eAAe,CAAC,EAAE;QAC9B,OAAO,CAAC,IAAI,CAAC,iCAAiC,IAAI,EAAE,CAAC,CAAA;KACtD;IACD,OAAO,CACL,oBAAC,KAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,6BAAK,SAAS,EAAE,OAAO,CAAC,YAAY;YAClC,oBAAC,cAAc,IAAC,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,GAAI,CAClD;QACN,6BAAK,SAAS,EAAE,OAAO,CAAC,cAAc,IACnC,IAAI,CAAC,eAAe,CAAC,MAAM,CAAC,CAAC,CAAC,CAC7B,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE,CACZ,IAAI,CAAC,UAAU;gBACb,CAAC,CAAC,IAAI,CAAC,cAAc,EAAE;gBACvB,CAAC,CAAC,IAAI,CAAC,iBAAiB,EAAE,EAE9B,KAAK,EAAE,cACL,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,UACtC,EAAE,IAED,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,oBAAC,WAAW,OAAG,CAAC,CAAC,CAAC,oBAAC,wBAAwB,OAAG,CACtD,CACd,CAAC,CAAC,CAAC,IAAI,CACJ,CACA,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,UAAU,CAAA"}
|
|
@@ -1,6 +1,5 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
1
|
export { default as stateModelFactory } from './model';
|
|
3
|
-
export declare const configSchema: import("@jbrowse/core/configuration").
|
|
2
|
+
export declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4
3
|
export declare const HeadingComponent: ({ model }: {
|
|
5
4
|
model?: {
|
|
6
5
|
target: {
|
|
@@ -1,2 +1,10 @@
|
|
|
1
|
-
declare const configSchema: import("@jbrowse/core/configuration").
|
|
1
|
+
declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
+
/**
|
|
3
|
+
* #slot
|
|
4
|
+
*/
|
|
5
|
+
features: {
|
|
6
|
+
type: string;
|
|
7
|
+
defaultValue: never[];
|
|
8
|
+
};
|
|
9
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
2
10
|
export default configSchema;
|
|
@@ -1,2 +1,10 @@
|
|
|
1
|
-
declare const regionsConfigSchema: import("@jbrowse/core/configuration").
|
|
1
|
+
declare const regionsConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
+
/**
|
|
3
|
+
* #slot
|
|
4
|
+
*/
|
|
5
|
+
features: {
|
|
6
|
+
type: string;
|
|
7
|
+
defaultValue: never[];
|
|
8
|
+
};
|
|
9
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
2
10
|
export default regionsConfigSchema;
|
|
@@ -1,2 +1,10 @@
|
|
|
1
|
-
declare const sequenceConfigSchema: import("@jbrowse/core/configuration").
|
|
1
|
+
declare const sequenceConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
+
/**
|
|
3
|
+
* #slot
|
|
4
|
+
*/
|
|
5
|
+
features: {
|
|
6
|
+
type: string;
|
|
7
|
+
defaultValue: never[];
|
|
8
|
+
};
|
|
9
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
2
10
|
export default sequenceConfigSchema;
|
|
@@ -1,2 +1,22 @@
|
|
|
1
|
-
declare const RefNameAliasAdapter: import("@jbrowse/core/configuration").
|
|
1
|
+
declare const RefNameAliasAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
+
/**
|
|
3
|
+
* #slot
|
|
4
|
+
*/
|
|
5
|
+
location: {
|
|
6
|
+
type: string;
|
|
7
|
+
defaultValue: {
|
|
8
|
+
uri: string;
|
|
9
|
+
locationType: string;
|
|
10
|
+
};
|
|
11
|
+
};
|
|
12
|
+
/**
|
|
13
|
+
* #slot
|
|
14
|
+
* by default, the "ref names that match the fasta" are assumed to be in the
|
|
15
|
+
* first column (0), change this variable if needed
|
|
16
|
+
*/
|
|
17
|
+
refNameColumn: {
|
|
18
|
+
type: string;
|
|
19
|
+
defaultValue: number;
|
|
20
|
+
};
|
|
21
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
2
22
|
export default RefNameAliasAdapter;
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-config",
|
|
3
|
-
"version": "2.
|
|
3
|
+
"version": "2.5.0",
|
|
4
4
|
"description": "JBrowse 2 config utilities",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -57,5 +57,5 @@
|
|
|
57
57
|
"distModule": "esm/index.js",
|
|
58
58
|
"srcModule": "src/index.ts",
|
|
59
59
|
"module": "esm/index.js",
|
|
60
|
-
"gitHead": "
|
|
60
|
+
"gitHead": "d1ca073996d008f0fe9a52f7c1a47ae649dcfdaf"
|
|
61
61
|
}
|
|
@@ -148,24 +148,19 @@ const ConfigurationEditor = observer(function ({
|
|
|
148
148
|
const key = target && readConfObject(target, 'trackId')
|
|
149
149
|
const name = target && readConfObject(target, 'name')
|
|
150
150
|
return (
|
|
151
|
-
|
|
152
|
-
<
|
|
153
|
-
<
|
|
154
|
-
|
|
155
|
-
>
|
|
156
|
-
|
|
157
|
-
|
|
158
|
-
|
|
159
|
-
|
|
160
|
-
|
|
161
|
-
|
|
162
|
-
|
|
163
|
-
|
|
164
|
-
</Accordion>
|
|
165
|
-
|
|
166
|
-
{/* blank space at the bottom of screen allows scroll */}
|
|
167
|
-
<div style={{ height: 300 }} />
|
|
168
|
-
</>
|
|
151
|
+
<Accordion key={key} defaultExpanded className={classes.accordion}>
|
|
152
|
+
<AccordionSummary
|
|
153
|
+
expandIcon={<ExpandMoreIcon className={classes.expandIcon} />}
|
|
154
|
+
>
|
|
155
|
+
<Typography>{name ?? 'Configuration'}</Typography>
|
|
156
|
+
</AccordionSummary>
|
|
157
|
+
<AccordionDetails
|
|
158
|
+
className={classes.expansionPanelDetails}
|
|
159
|
+
data-testid="configEditor"
|
|
160
|
+
>
|
|
161
|
+
{!target ? 'no target set' : <Schema schema={target} />}
|
|
162
|
+
</AccordionDetails>
|
|
163
|
+
</Accordion>
|
|
169
164
|
)
|
|
170
165
|
})
|
|
171
166
|
|
|
@@ -4,9 +4,9 @@ import { getPropertyMembers, IAnyType } from 'mobx-state-tree'
|
|
|
4
4
|
import { getEnv, FileLocation } from '@jbrowse/core/util'
|
|
5
5
|
import { FileSelector } from '@jbrowse/core/ui'
|
|
6
6
|
import {
|
|
7
|
-
getPropertyType,
|
|
8
7
|
getSubType,
|
|
9
8
|
getUnionSubTypes,
|
|
9
|
+
ILiteralType,
|
|
10
10
|
} from '@jbrowse/core/util/mst-reflection'
|
|
11
11
|
import { IconButton, MenuItem, Paper, SvgIcon, TextField } from '@mui/material'
|
|
12
12
|
import { makeStyles } from 'tss-react/mui'
|
|
@@ -24,6 +24,10 @@ import ConfigurationTextField from './ConfigurationTextField'
|
|
|
24
24
|
import NumberMapEditor from './NumberMapEditor'
|
|
25
25
|
import NumberEditor from './NumberEditor'
|
|
26
26
|
import BooleanEditor from './BooleanEditor'
|
|
27
|
+
import {
|
|
28
|
+
AnyConfigurationSlot,
|
|
29
|
+
AnyConfigurationSlotType,
|
|
30
|
+
} from '@jbrowse/core/configuration'
|
|
27
31
|
|
|
28
32
|
const StringEditor = observer(
|
|
29
33
|
({
|
|
@@ -107,14 +111,13 @@ const StringEnumEditor = observer(function ({
|
|
|
107
111
|
slot,
|
|
108
112
|
slotSchema,
|
|
109
113
|
}: {
|
|
110
|
-
|
|
111
|
-
|
|
112
|
-
slotSchema: IAnyType
|
|
114
|
+
slot: AnyConfigurationSlot
|
|
115
|
+
slotSchema: AnyConfigurationSlotType
|
|
113
116
|
}) {
|
|
114
117
|
const p = getPropertyMembers(getSubType(slotSchema))
|
|
115
118
|
const choices = getUnionSubTypes(
|
|
116
|
-
getUnionSubTypes(getSubType(
|
|
117
|
-
).map(t => t.value)
|
|
119
|
+
getUnionSubTypes(getSubType(p.properties.value))[1],
|
|
120
|
+
).map(t => (t as ILiteralType<string>).value)
|
|
118
121
|
|
|
119
122
|
return (
|
|
120
123
|
<ConfigurationTextField
|
package/src/ConfigurationEditorWidget/components/__snapshots__/ConfigurationEditor.test.tsx.snap
CHANGED
|
@@ -1127,7 +1127,7 @@ exports[`ConfigurationEditor widget renders with defaults of the PileupTrack sch
|
|
|
1127
1127
|
</div>
|
|
1128
1128
|
</div>
|
|
1129
1129
|
<p>
|
|
1130
|
-
|
|
1130
|
+
text to display when the cursor hovers over a feature
|
|
1131
1131
|
</p>
|
|
1132
1132
|
<button
|
|
1133
1133
|
class="MuiButtonBase-root MuiIconButton-root MuiIconButton-colorPrimary MuiIconButton-sizeMedium css-1kuq5xv-MuiButtonBase-root-MuiIconButton-root"
|
|
@@ -1262,6 +1262,7 @@ exports[`ConfigurationEditor widget renders with defaults of the PileupTrack sch
|
|
|
1262
1262
|
</div>
|
|
1263
1263
|
<input
|
|
1264
1264
|
aria-hidden="true"
|
|
1265
|
+
aria-invalid="false"
|
|
1265
1266
|
class="MuiSelect-nativeInput css-yf8vq0-MuiSelect-nativeInput"
|
|
1266
1267
|
tabindex="-1"
|
|
1267
1268
|
value="PileupRenderer"
|
|
@@ -1427,6 +1428,7 @@ exports[`ConfigurationEditor widget renders with defaults of the PileupTrack sch
|
|
|
1427
1428
|
</div>
|
|
1428
1429
|
<input
|
|
1429
1430
|
aria-hidden="true"
|
|
1431
|
+
aria-invalid="false"
|
|
1430
1432
|
class="MuiSelect-nativeInput css-yf8vq0-MuiSelect-nativeInput"
|
|
1431
1433
|
tabindex="-1"
|
|
1432
1434
|
value="fr"
|
|
@@ -1503,6 +1505,7 @@ exports[`ConfigurationEditor widget renders with defaults of the PileupTrack sch
|
|
|
1503
1505
|
</div>
|
|
1504
1506
|
<input
|
|
1505
1507
|
aria-hidden="true"
|
|
1508
|
+
aria-invalid="false"
|
|
1506
1509
|
class="MuiSelect-nativeInput css-yf8vq0-MuiSelect-nativeInput"
|
|
1507
1510
|
tabindex="-1"
|
|
1508
1511
|
value="normal"
|