@jbrowse/plugin-config 2.2.2 → 2.3.0

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Files changed (82) hide show
  1. package/dist/FromConfigAdapter/{fromConfig.d.ts → configSchema.d.ts} +0 -0
  2. package/dist/FromConfigAdapter/{fromConfig.js → configSchema.js} +1 -1
  3. package/dist/FromConfigAdapter/configSchema.js.map +1 -0
  4. package/dist/FromConfigAdapter/index.d.ts +3 -6
  5. package/dist/FromConfigAdapter/index.js +35 -13
  6. package/dist/FromConfigAdapter/index.js.map +1 -1
  7. package/dist/{FromConfigAdapter → FromConfigRegionsAdapter}/FromConfigRegionsAdapter.d.ts +0 -0
  8. package/dist/{FromConfigAdapter → FromConfigRegionsAdapter}/FromConfigRegionsAdapter.js +1 -1
  9. package/dist/FromConfigRegionsAdapter/FromConfigRegionsAdapter.js.map +1 -0
  10. package/dist/{FromConfigAdapter/fromConfigRegions.d.ts → FromConfigRegionsAdapter/configSchema.d.ts} +0 -0
  11. package/dist/{FromConfigAdapter/fromConfigRegions.js → FromConfigRegionsAdapter/configSchema.js} +1 -1
  12. package/dist/FromConfigRegionsAdapter/configSchema.js.map +1 -0
  13. package/dist/FromConfigRegionsAdapter/index.d.ts +3 -0
  14. package/dist/FromConfigRegionsAdapter/index.js +41 -0
  15. package/dist/FromConfigRegionsAdapter/index.js.map +1 -0
  16. package/{esm/FromConfigAdapter → dist/FromConfigSequenceAdapter}/FromConfigSequenceAdapter.d.ts +1 -1
  17. package/dist/{FromConfigAdapter → FromConfigSequenceAdapter}/FromConfigSequenceAdapter.js +2 -1
  18. package/dist/FromConfigSequenceAdapter/FromConfigSequenceAdapter.js.map +1 -0
  19. package/dist/{FromConfigAdapter/fromConfigSequence.d.ts → FromConfigSequenceAdapter/configSchema.d.ts} +0 -0
  20. package/dist/{FromConfigAdapter/fromConfigSequence.js → FromConfigSequenceAdapter/configSchema.js} +1 -1
  21. package/dist/FromConfigSequenceAdapter/configSchema.js.map +1 -0
  22. package/dist/FromConfigSequenceAdapter/index.d.ts +3 -0
  23. package/dist/FromConfigSequenceAdapter/index.js +41 -0
  24. package/dist/FromConfigSequenceAdapter/index.js.map +1 -0
  25. package/dist/RefNameAliasAdapter/index.d.ts +3 -2
  26. package/dist/RefNameAliasAdapter/index.js +35 -5
  27. package/dist/RefNameAliasAdapter/index.js.map +1 -1
  28. package/dist/index.js +8 -47
  29. package/dist/index.js.map +1 -1
  30. package/esm/FromConfigAdapter/{fromConfig.d.ts → configSchema.d.ts} +0 -0
  31. package/esm/FromConfigAdapter/{fromConfig.js → configSchema.js} +1 -1
  32. package/esm/FromConfigAdapter/configSchema.js.map +1 -0
  33. package/esm/FromConfigAdapter/index.d.ts +3 -6
  34. package/esm/FromConfigAdapter/index.js +12 -6
  35. package/esm/FromConfigAdapter/index.js.map +1 -1
  36. package/esm/{FromConfigAdapter → FromConfigRegionsAdapter}/FromConfigRegionsAdapter.d.ts +0 -0
  37. package/esm/{FromConfigAdapter → FromConfigRegionsAdapter}/FromConfigRegionsAdapter.js +1 -1
  38. package/esm/FromConfigRegionsAdapter/FromConfigRegionsAdapter.js.map +1 -0
  39. package/esm/{FromConfigAdapter/fromConfigRegions.d.ts → FromConfigRegionsAdapter/configSchema.d.ts} +0 -0
  40. package/esm/{FromConfigAdapter/fromConfigRegions.js → FromConfigRegionsAdapter/configSchema.js} +1 -1
  41. package/esm/FromConfigRegionsAdapter/configSchema.js.map +1 -0
  42. package/esm/FromConfigRegionsAdapter/index.d.ts +3 -0
  43. package/esm/FromConfigRegionsAdapter/index.js +13 -0
  44. package/esm/FromConfigRegionsAdapter/index.js.map +1 -0
  45. package/{dist/FromConfigAdapter → esm/FromConfigSequenceAdapter}/FromConfigSequenceAdapter.d.ts +1 -1
  46. package/esm/{FromConfigAdapter → FromConfigSequenceAdapter}/FromConfigSequenceAdapter.js +2 -1
  47. package/esm/FromConfigSequenceAdapter/FromConfigSequenceAdapter.js.map +1 -0
  48. package/esm/{FromConfigAdapter/fromConfigSequence.d.ts → FromConfigSequenceAdapter/configSchema.d.ts} +0 -0
  49. package/esm/{FromConfigAdapter/fromConfigSequence.js → FromConfigSequenceAdapter/configSchema.js} +1 -1
  50. package/esm/FromConfigSequenceAdapter/configSchema.js.map +1 -0
  51. package/esm/FromConfigSequenceAdapter/index.d.ts +3 -0
  52. package/esm/FromConfigSequenceAdapter/index.js +13 -0
  53. package/esm/FromConfigSequenceAdapter/index.js.map +1 -0
  54. package/esm/RefNameAliasAdapter/index.d.ts +3 -2
  55. package/esm/RefNameAliasAdapter/index.js +12 -2
  56. package/esm/RefNameAliasAdapter/index.js.map +1 -1
  57. package/esm/index.js +8 -47
  58. package/esm/index.js.map +1 -1
  59. package/package.json +3 -4
  60. package/src/FromConfigAdapter/FromConfigAdapter.test.ts +1 -1
  61. package/src/FromConfigAdapter/{fromConfig.ts → configSchema.ts} +0 -0
  62. package/src/FromConfigAdapter/index.ts +18 -6
  63. package/src/{FromConfigAdapter → FromConfigRegionsAdapter}/FromConfigRegionsAdapter.test.ts +1 -1
  64. package/src/{FromConfigAdapter → FromConfigRegionsAdapter}/FromConfigRegionsAdapter.ts +2 -1
  65. package/src/{FromConfigAdapter/fromConfigRegions.ts → FromConfigRegionsAdapter/configSchema.ts} +0 -0
  66. package/src/FromConfigRegionsAdapter/index.ts +18 -0
  67. package/src/{FromConfigAdapter → FromConfigSequenceAdapter}/FromConfigSequenceAdapter.test.ts +1 -1
  68. package/src/{FromConfigAdapter → FromConfigSequenceAdapter}/FromConfigSequenceAdapter.ts +3 -1
  69. package/src/{FromConfigAdapter/fromConfigSequence.ts → FromConfigSequenceAdapter/configSchema.ts} +0 -0
  70. package/src/FromConfigSequenceAdapter/index.ts +19 -0
  71. package/src/RefNameAliasAdapter/index.ts +19 -2
  72. package/src/index.ts +8 -75
  73. package/dist/FromConfigAdapter/FromConfigRegionsAdapter.js.map +0 -1
  74. package/dist/FromConfigAdapter/FromConfigSequenceAdapter.js.map +0 -1
  75. package/dist/FromConfigAdapter/fromConfig.js.map +0 -1
  76. package/dist/FromConfigAdapter/fromConfigRegions.js.map +0 -1
  77. package/dist/FromConfigAdapter/fromConfigSequence.js.map +0 -1
  78. package/esm/FromConfigAdapter/FromConfigRegionsAdapter.js.map +0 -1
  79. package/esm/FromConfigAdapter/FromConfigSequenceAdapter.js.map +0 -1
  80. package/esm/FromConfigAdapter/fromConfig.js.map +0 -1
  81. package/esm/FromConfigAdapter/fromConfigRegions.js.map +0 -1
  82. package/esm/FromConfigAdapter/fromConfigSequence.js.map +0 -1
@@ -15,4 +15,4 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('FromConfigAdapter
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  },
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  }, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
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  exports.default = configSchema;
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- //# sourceMappingURL=fromConfig.js.map
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+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}
@@ -1,6 +1,3 @@
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- export { default as AdapterClass } from './FromConfigAdapter';
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- export { default as RegionsAdapterClass } from './FromConfigRegionsAdapter';
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- export { default as SequenceAdapterClass } from './FromConfigSequenceAdapter';
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- export { default as configSchema } from './fromConfig';
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- export { default as regionsConfigSchema } from './fromConfigRegions';
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- export { default as sequenceConfigSchema } from './fromConfigSequence';
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+ import PluginManager from '@jbrowse/core/PluginManager';
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+ declare const _default: (pluginManager: PluginManager) => void;
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+ export default _default;
@@ -1,19 +1,41 @@
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  "use strict";
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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+ });
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+ var __importStar = (this && this.__importStar) || function (mod) {
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+ if (mod && mod.__esModule) return mod;
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+ var result = {};
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+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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+ __setModuleDefault(result, mod);
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+ return result;
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+ };
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  var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- exports.sequenceConfigSchema = exports.regionsConfigSchema = exports.configSchema = exports.SequenceAdapterClass = exports.RegionsAdapterClass = exports.AdapterClass = void 0;
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- var FromConfigAdapter_1 = require("./FromConfigAdapter");
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- Object.defineProperty(exports, "AdapterClass", { enumerable: true, get: function () { return __importDefault(FromConfigAdapter_1).default; } });
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- var FromConfigRegionsAdapter_1 = require("./FromConfigRegionsAdapter");
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- Object.defineProperty(exports, "RegionsAdapterClass", { enumerable: true, get: function () { return __importDefault(FromConfigRegionsAdapter_1).default; } });
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- var FromConfigSequenceAdapter_1 = require("./FromConfigSequenceAdapter");
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- Object.defineProperty(exports, "SequenceAdapterClass", { enumerable: true, get: function () { return __importDefault(FromConfigSequenceAdapter_1).default; } });
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- var fromConfig_1 = require("./fromConfig");
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- Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(fromConfig_1).default; } });
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- var fromConfigRegions_1 = require("./fromConfigRegions");
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- Object.defineProperty(exports, "regionsConfigSchema", { enumerable: true, get: function () { return __importDefault(fromConfigRegions_1).default; } });
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- var fromConfigSequence_1 = require("./fromConfigSequence");
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- Object.defineProperty(exports, "sequenceConfigSchema", { enumerable: true, get: function () { return __importDefault(fromConfigSequence_1).default; } });
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+ const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
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+ const configSchema_1 = __importDefault(require("./configSchema"));
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+ exports.default = (pluginManager) => {
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+ pluginManager.addAdapterType(() => new pluggableElementTypes_1.AdapterType({
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+ name: 'FromConfigAdapter',
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+ configSchema: configSchema_1.default,
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+ getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./FromConfigAdapter'))).then(r => r.default),
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+ adapterMetadata: {
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+ hiddenFromGUI: true,
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+ },
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+ }));
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+ };
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  //# sourceMappingURL=index.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/index.ts"],"names":[],"mappings":";;;;;;AAAA,yDAA6D;AAApD,kIAAA,OAAO,OAAgB;AAChC,uEAA2E;AAAlE,gJAAA,OAAO,OAAuB;AACvC,yEAA6E;AAApE,kJAAA,OAAO,OAAwB;AACxC,2CAAsD;AAA7C,2HAAA,OAAO,OAAgB;AAChC,yDAAoE;AAA3D,yIAAA,OAAO,OAAuB;AACvC,2DAAsE;AAA7D,2IAAA,OAAO,OAAwB"}
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+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+EAAiE;AAEjE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,mCAAW,CAAC;QACd,IAAI,EAAE,mBAAmB;QACzB,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,qBAAqB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;QACpD,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;KACF,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
@@ -5,7 +5,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  Object.defineProperty(exports, "__esModule", { value: true });
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  const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
7
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  const configuration_1 = require("@jbrowse/core/configuration");
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- const FromConfigAdapter_1 = __importDefault(require("./FromConfigAdapter"));
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+ const FromConfigAdapter_1 = __importDefault(require("../FromConfigAdapter/FromConfigAdapter"));
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  /**
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  * Adapter that just returns the features defined in its `features` configuration
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  * key, like:
@@ -0,0 +1 @@
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+ {"version":3,"file":"FromConfigRegionsAdapter.js","sourceRoot":"","sources":["../../src/FromConfigRegionsAdapter/FromConfigRegionsAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAKhD,+DAGoC;AAIpC,+FAAsE;AAEtE;;;;GAIG;AACH,MAAqB,wBACnB,SAAQ,yBAAW;IAKnB,YACE,MAA6B,EAC7B,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,QAAQ,GAAG,IAAA,8BAAc,EAC7B,MAAM,EACN,UAAU,CACkB,CAAA;QAC9B,IAAI,CAAC,QAAQ,GAAG,2BAAiB,CAAC,YAAY,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAA;IAChE,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,UAAU;QACd,MAAM,OAAO,GAAG,EAAE,CAAA;QAElB,wEAAwE;QACxE,KAAK,MAAM,CAAC,OAAO,EAAE,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,EAAE;YAC/C,IAAI,aAAa,CAAA;YACjB,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE;gBAC9B,IACE,aAAa;oBACb,aAAa,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;oBACzC,aAAa,CAAC,KAAK,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EACzC;oBACA,aAAa,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;iBACvC;qBAAM;oBACL,IAAI,aAAa,EAAE;wBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;qBAC5B;oBACD,aAAa,GAAG;wBACd,OAAO;wBACP,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;qBACxB,CAAA;iBACF;aACF;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;aAC5B;SACF;QAED,8BAA8B;QAC9B,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAA;QAE1D,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;CACzC;AA1DD,2CA0DC"}
@@ -19,4 +19,4 @@ const regionsConfigSchema = (0, configuration_1.ConfigurationSchema)('FromConfig
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  implicitIdentifier: 'adapterId',
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  });
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  exports.default = regionsConfigSchema;
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- //# sourceMappingURL=fromConfigRegions.js.map
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+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigRegionsAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,IAAA,mCAAmB,EAC7C,0BAA0B,EAC1B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD;IACE,eAAe,EAAE,IAAI;IACrB,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AACD,kBAAe,mBAAmB,CAAA"}
@@ -0,0 +1,3 @@
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+ import PluginManager from '@jbrowse/core/PluginManager';
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+ declare const _default: (pluginManager: PluginManager) => void;
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+ export default _default;
@@ -0,0 +1,41 @@
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+ "use strict";
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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+ });
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+ var __importStar = (this && this.__importStar) || function (mod) {
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+ if (mod && mod.__esModule) return mod;
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+ var result = {};
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+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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+ __setModuleDefault(result, mod);
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+ return result;
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+ };
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+ var __importDefault = (this && this.__importDefault) || function (mod) {
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+ return (mod && mod.__esModule) ? mod : { "default": mod };
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
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+ const configSchema_1 = __importDefault(require("./configSchema"));
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+ exports.default = (pluginManager) => {
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+ pluginManager.addAdapterType(() => new pluggableElementTypes_1.AdapterType({
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+ name: 'FromConfigRegionsAdapter',
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+ configSchema: configSchema_1.default,
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+ getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./FromConfigRegionsAdapter'))).then(r => r.default),
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+ adapterMetadata: {
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+ hiddenFromGUI: true,
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+ },
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+ }));
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+ };
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+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigRegionsAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+EAAiE;AAEjE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,mCAAW,CAAC;QACd,IAAI,EAAE,0BAA0B;QAChC,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,4BAA4B,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;QAC3D,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;KACF,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
@@ -1,7 +1,7 @@
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  import { Feature } from '@jbrowse/core/util/simpleFeature';
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  import { NoAssemblyRegion } from '@jbrowse/core/util/types';
3
- import FromConfigAdapter from './FromConfigAdapter';
4
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  import { RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
4
+ import FromConfigAdapter from '../FromConfigAdapter/FromConfigAdapter';
5
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  export default class FromConfigSequenceAdapter extends FromConfigAdapter implements RegionsAdapter {
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  /**
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  * Fetch features for a certain region
@@ -6,7 +6,8 @@ Object.defineProperty(exports, "__esModule", { value: true });
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  const simpleFeature_1 = __importDefault(require("@jbrowse/core/util/simpleFeature"));
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  const rxjs_1 = require("@jbrowse/core/util/rxjs");
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  const operators_1 = require("rxjs/operators");
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- const FromConfigAdapter_1 = __importDefault(require("./FromConfigAdapter"));
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+ // locals
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+ const FromConfigAdapter_1 = __importDefault(require("../FromConfigAdapter/FromConfigAdapter"));
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  class FromConfigSequenceAdapter extends FromConfigAdapter_1.default {
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  /**
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  * Fetch features for a certain region
@@ -0,0 +1 @@
1
+ {"version":3,"file":"FromConfigSequenceAdapter.js","sourceRoot":"","sources":["../../src/FromConfigSequenceAdapter/FromConfigSequenceAdapter.ts"],"names":[],"mappings":";;;;;AAAA,qFAAyE;AACzE,kDAA0D;AAE1D,8CAAwC;AAGxC,SAAS;AACT,+FAAsE;AAEtE,MAAqB,yBACnB,SAAQ,2BAAiB;IAGzB;;;;OAIG;IACH,WAAW,CAAC,MAAwB;QAClC,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,KAAK,GAAG,MAAM,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC,CAAC,SAAS,EAAE,CAAA;YACzE,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;YACrB,QAAQ,CAAC,IAAI,CACX,IAAI,uBAAa,CAAC;gBAChB,GAAG,IAAI,CAAC,MAAM,EAAE;gBAChB,QAAQ,EAAE,GAAG,IAAI,CAAC,EAAE,EAAE,IAAI,MAAM,CAAC,KAAK,IAAI,MAAM,CAAC,GAAG,EAAE;gBACtD,GAAG,EAAE,MAAM,CAAC,GAAG;gBACf,KAAK,EAAE,MAAM,CAAC,KAAK;gBACnB,GAAG,EAAE,IAAI;qBACN,GAAG,CAAC,KAAK,CAAC;qBACV,KAAK,CACJ,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,EAC7C,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,CAC5C;aACJ,CAAC,CACH,CAAA;YAED,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,UAAU;QACd,MAAM,OAAO,GAAG,EAAE,CAAA;QAElB,wEAAwE;QACxE,KAAK,MAAM,CAAC,OAAO,EAAE,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,EAAE;YAC/C,IAAI,aAAa,CAAA;YACjB,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE;gBAC9B,IACE,aAAa;oBACb,aAAa,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;oBACzC,aAAa,CAAC,KAAK,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EACzC;oBACA,aAAa,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;iBACvC;qBAAM;oBACL,IAAI,aAAa,EAAE;wBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;qBAC5B;oBACD,aAAa,GAAG;wBACd,OAAO;wBACP,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;qBACxB,CAAA;iBACF;aACF;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;aAC5B;SACF;QAED,OAAO,OAAO,CAAA;IAChB,CAAC;IAED;;;;OAIG;IACH,aAAa,EAAC,gBAAgB,IAAS,CAAC;CACzC;AAzED,4CAyEC"}
@@ -15,4 +15,4 @@ const sequenceConfigSchema = (0, configuration_1.ConfigurationSchema)('FromConfi
15
15
  },
16
16
  }, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
17
17
  exports.default = sequenceConfigSchema;
18
- //# sourceMappingURL=fromConfigSequence.js.map
18
+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigSequenceAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,oBAAoB,GAAG,IAAA,mCAAmB,EAC9C,2BAA2B,EAC3B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,kBAAe,oBAAoB,CAAA"}
@@ -0,0 +1,3 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ declare const _default: (pluginManager: PluginManager) => void;
3
+ export default _default;
@@ -0,0 +1,41 @@
1
+ "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
17
+ });
18
+ var __importStar = (this && this.__importStar) || function (mod) {
19
+ if (mod && mod.__esModule) return mod;
20
+ var result = {};
21
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
+ __setModuleDefault(result, mod);
23
+ return result;
24
+ };
25
+ var __importDefault = (this && this.__importDefault) || function (mod) {
26
+ return (mod && mod.__esModule) ? mod : { "default": mod };
27
+ };
28
+ Object.defineProperty(exports, "__esModule", { value: true });
29
+ const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
30
+ const configSchema_1 = __importDefault(require("./configSchema"));
31
+ exports.default = (pluginManager) => {
32
+ pluginManager.addAdapterType(() => new pluggableElementTypes_1.AdapterType({
33
+ name: 'FromConfigSequenceAdapter',
34
+ configSchema: configSchema_1.default,
35
+ getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./FromConfigSequenceAdapter'))).then(r => r.default),
36
+ adapterMetadata: {
37
+ hiddenFromGUI: true,
38
+ },
39
+ }));
40
+ };
41
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigSequenceAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+EAAiE;AAGjE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,mCAAW,CAAC;QACd,IAAI,EAAE,2BAA2B;QACjC,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,6BAA6B,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;QAC5D,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;KACF,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
@@ -1,2 +1,3 @@
1
- export { default as AdapterClass } from './RefNameAliasAdapter';
2
- export { default as configSchema } from './configSchema';
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ declare const _default: (pluginManager: PluginManager) => void;
3
+ export default _default;
@@ -1,11 +1,41 @@
1
1
  "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
17
+ });
18
+ var __importStar = (this && this.__importStar) || function (mod) {
19
+ if (mod && mod.__esModule) return mod;
20
+ var result = {};
21
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
+ __setModuleDefault(result, mod);
23
+ return result;
24
+ };
2
25
  var __importDefault = (this && this.__importDefault) || function (mod) {
3
26
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
27
  };
5
28
  Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.configSchema = exports.AdapterClass = void 0;
7
- var RefNameAliasAdapter_1 = require("./RefNameAliasAdapter");
8
- Object.defineProperty(exports, "AdapterClass", { enumerable: true, get: function () { return __importDefault(RefNameAliasAdapter_1).default; } });
9
- var configSchema_1 = require("./configSchema");
10
- Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(configSchema_1).default; } });
29
+ const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
30
+ const configSchema_1 = __importDefault(require("./configSchema"));
31
+ exports.default = (pluginManager) => {
32
+ pluginManager.addAdapterType(() => new pluggableElementTypes_1.AdapterType({
33
+ name: 'RefNameAliasAdapter',
34
+ configSchema: configSchema_1.default,
35
+ getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./RefNameAliasAdapter'))).then(r => r.default),
36
+ adapterMetadata: {
37
+ hiddenFromGUI: true,
38
+ },
39
+ }));
40
+ };
11
41
  //# sourceMappingURL=index.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/index.ts"],"names":[],"mappings":";;;;;;AAAA,6DAA+D;AAAtD,oIAAA,OAAO,OAAgB;AAChC,+CAAwD;AAA/C,6HAAA,OAAO,OAAgB"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+EAAiE;AAGjE,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,mCAAW,CAAC;QACd,IAAI,EAAE,qBAAqB;QAC3B,YAAY,EAAZ,sBAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,uBAAuB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;QACtD,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;KACF,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/dist/index.js CHANGED
@@ -28,12 +28,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
28
28
  Object.defineProperty(exports, "__esModule", { value: true });
29
29
  exports.ConfigurationEditor = exports.JsonEditor = void 0;
30
30
  const react_1 = require("react");
31
- const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
32
31
  const WidgetType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/WidgetType"));
33
32
  const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
34
33
  const ConfigurationEditorWidget_1 = require("./ConfigurationEditorWidget");
35
- const FromConfigAdapter_1 = require("./FromConfigAdapter");
36
- const RefNameAliasAdapter_1 = require("./RefNameAliasAdapter");
34
+ const FromConfigAdapter_1 = __importDefault(require("./FromConfigAdapter"));
35
+ const FromConfigRegionsAdapter_1 = __importDefault(require("./FromConfigRegionsAdapter"));
36
+ const FromConfigSequenceAdapter_1 = __importDefault(require("./FromConfigSequenceAdapter"));
37
+ const RefNameAliasAdapter_1 = __importDefault(require("./RefNameAliasAdapter"));
37
38
  const LazyConfigurationEditorComponent = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./ConfigurationEditorWidget/components/ConfigurationEditor'))));
38
39
  exports.ConfigurationEditor = LazyConfigurationEditorComponent;
39
40
  class default_1 extends Plugin_1.default {
@@ -42,50 +43,10 @@ class default_1 extends Plugin_1.default {
42
43
  this.name = 'ConfigurationPlugin';
43
44
  }
44
45
  install(pluginManager) {
45
- pluginManager.addAdapterType(() => new AdapterType_1.default({
46
- name: 'FromConfigAdapter',
47
- configSchema: FromConfigAdapter_1.configSchema,
48
- getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./FromConfigAdapter/FromConfigAdapter'))).then(r => r.default),
49
- adapterMetadata: {
50
- category: null,
51
- hiddenFromGUI: true,
52
- displayName: null,
53
- description: null,
54
- },
55
- }));
56
- pluginManager.addAdapterType(() => new AdapterType_1.default({
57
- name: 'FromConfigRegionsAdapter',
58
- configSchema: FromConfigAdapter_1.regionsConfigSchema,
59
- getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./FromConfigAdapter/FromConfigRegionsAdapter'))).then(r => r.default),
60
- adapterMetadata: {
61
- category: null,
62
- hiddenFromGUI: true,
63
- displayName: null,
64
- description: null,
65
- },
66
- }));
67
- pluginManager.addAdapterType(() => new AdapterType_1.default({
68
- name: 'FromConfigSequenceAdapter',
69
- configSchema: FromConfigAdapter_1.sequenceConfigSchema,
70
- getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./FromConfigAdapter/FromConfigSequenceAdapter'))).then(r => r.default),
71
- adapterMetadata: {
72
- category: null,
73
- hiddenFromGUI: true,
74
- displayName: null,
75
- description: null,
76
- },
77
- }));
78
- pluginManager.addAdapterType(() => new AdapterType_1.default({
79
- name: 'RefNameAliasAdapter',
80
- configSchema: RefNameAliasAdapter_1.configSchema,
81
- getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./RefNameAliasAdapter/RefNameAliasAdapter'))).then(r => r.default),
82
- adapterMetadata: {
83
- category: null,
84
- hiddenFromGUI: true,
85
- displayName: null,
86
- description: null,
87
- },
88
- }));
46
+ (0, FromConfigAdapter_1.default)(pluginManager);
47
+ (0, FromConfigRegionsAdapter_1.default)(pluginManager);
48
+ (0, FromConfigSequenceAdapter_1.default)(pluginManager);
49
+ (0, RefNameAliasAdapter_1.default)(pluginManager);
89
50
  pluginManager.addWidgetType(() => {
90
51
  return new WidgetType_1.default({
91
52
  name: 'ConfigurationEditorWidget',
package/dist/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,iCAA4B;AAC5B,kGAAyE;AACzE,gGAAuE;AACvE,kEAAyC;AAEzC,2EAIoC;AACpC,2DAI4B;AAC5B,+DAAuF;AAEvF,MAAM,gCAAgC,GAAG,IAAA,YAAI,EAC3C,GAAG,EAAE,mDAAQ,4DAA4D,GAAC,CAC3E,CAAA;AAyF4C,+DAAmB;AAvFhE,eAAqB,SAAQ,gBAAM;IAAnC;;QACE,SAAI,GAAG,qBAAqB,CAAA;IAkF9B,CAAC;IAhFC,OAAO,CAAC,aAA4B;QAClC,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;YACd,IAAI,EAAE,mBAAmB;YACzB,YAAY,EAAE,gCAA6B;YAC3C,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,uCAAuC,IAAE,IAAI,CAClD,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CACf;YACH,eAAe,EAAE;gBACf,QAAQ,EAAE,IAAI;gBACd,aAAa,EAAE,IAAI;gBACnB,WAAW,EAAE,IAAI;gBACjB,WAAW,EAAE,IAAI;aAClB;SACF,CAAC,CACL,CAAA;QACD,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;YACd,IAAI,EAAE,0BAA0B;YAChC,YAAY,EAAE,uCAAoC;YAClD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,8CAA8C,IAAE,IAAI,CACzD,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CACf;YACH,eAAe,EAAE;gBACf,QAAQ,EAAE,IAAI;gBACd,aAAa,EAAE,IAAI;gBACnB,WAAW,EAAE,IAAI;gBACjB,WAAW,EAAE,IAAI;aAClB;SACF,CAAC,CACL,CAAA;QACD,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;YACd,IAAI,EAAE,2BAA2B;YACjC,YAAY,EAAE,wCAAqC;YACnD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,+CAA+C,IAAE,IAAI,CAC1D,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CACf;YACH,eAAe,EAAE;gBACf,QAAQ,EAAE,IAAI;gBACd,aAAa,EAAE,IAAI;gBACnB,WAAW,EAAE,IAAI;gBACjB,WAAW,EAAE,IAAI;aAClB;SACF,CAAC,CACL,CAAA;QACD,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;YACd,IAAI,EAAE,qBAAqB;YAC3B,YAAY,EAAE,kCAA+B;YAC7C,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,2CAA2C,IAAE,IAAI,CACtD,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CACf;YACH,eAAe,EAAE;gBACf,QAAQ,EAAE,IAAI;gBACd,aAAa,EAAE,IAAI;gBACnB,WAAW,EAAE,IAAI;gBACjB,WAAW,EAAE,IAAI;aAClB;SACF,CAAC,CACL,CAAA;QAED,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;YAC/B,OAAO,IAAI,oBAAU,CAAC;gBACpB,IAAI,EAAE,2BAA2B;gBACjC,gBAAgB,EAAE,4CAAmC;gBACrD,YAAY,EAAE,wCAA+B;gBAC7C,UAAU,EAAE,IAAA,6CAAoC,EAAC,aAAa,CAAC;gBAC/D,cAAc,EAAE,gCAAgC;aACjD,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;IACJ,CAAC;CACF;AAnFD,4BAmFC;AAED,gFAAyF;AAAhF,yHAAA,OAAO,OAAc"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,iCAA4B;AAC5B,gGAAuE;AACvE,kEAAyC;AAEzC,2EAIoC;AACpC,4EAAoD;AACpD,0FAAkE;AAClE,4FAAoE;AACpE,gFAAwD;AAExD,MAAM,gCAAgC,GAAG,IAAA,YAAI,EAC3C,GAAG,EAAE,mDAAQ,4DAA4D,GAAC,CAC3E,CAAA;AAyB4C,+DAAmB;AAvBhE,eAAqB,SAAQ,gBAAM;IAAnC;;QACE,SAAI,GAAG,qBAAqB,CAAA;IAkB9B,CAAC;IAhBC,OAAO,CAAC,aAA4B;QAClC,IAAA,2BAAkB,EAAC,aAAa,CAAC,CAAA;QACjC,IAAA,kCAAyB,EAAC,aAAa,CAAC,CAAA;QACxC,IAAA,mCAA0B,EAAC,aAAa,CAAC,CAAA;QACzC,IAAA,6BAAoB,EAAC,aAAa,CAAC,CAAA;QAEnC,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;YAC/B,OAAO,IAAI,oBAAU,CAAC;gBACpB,IAAI,EAAE,2BAA2B;gBACjC,gBAAgB,EAAE,4CAAmC;gBACrD,YAAY,EAAE,wCAA+B;gBAC7C,UAAU,EAAE,IAAA,6CAAoC,EAAC,aAAa,CAAC;gBAC/D,cAAc,EAAE,gCAAgC;aACjD,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;IACJ,CAAC;CACF;AAnBD,4BAmBC;AAED,gFAAyF;AAAhF,yHAAA,OAAO,OAAc"}
@@ -13,4 +13,4 @@ const configSchema = ConfigurationSchema('FromConfigAdapter', {
13
13
  },
14
14
  }, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
15
15
  export default configSchema;
16
- //# sourceMappingURL=fromConfig.js.map
16
+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,YAAY,GAAG,mBAAmB,CACtC,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,eAAe,YAAY,CAAA"}
@@ -1,6 +1,3 @@
1
- export { default as AdapterClass } from './FromConfigAdapter';
2
- export { default as RegionsAdapterClass } from './FromConfigRegionsAdapter';
3
- export { default as SequenceAdapterClass } from './FromConfigSequenceAdapter';
4
- export { default as configSchema } from './fromConfig';
5
- export { default as regionsConfigSchema } from './fromConfigRegions';
6
- export { default as sequenceConfigSchema } from './fromConfigSequence';
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ declare const _default: (pluginManager: PluginManager) => void;
3
+ export default _default;
@@ -1,7 +1,13 @@
1
- export { default as AdapterClass } from './FromConfigAdapter';
2
- export { default as RegionsAdapterClass } from './FromConfigRegionsAdapter';
3
- export { default as SequenceAdapterClass } from './FromConfigSequenceAdapter';
4
- export { default as configSchema } from './fromConfig';
5
- export { default as regionsConfigSchema } from './fromConfigRegions';
6
- export { default as sequenceConfigSchema } from './fromConfigSequence';
1
+ import { AdapterType } from '@jbrowse/core/pluggableElementTypes';
2
+ import configSchema from './configSchema';
3
+ export default (pluginManager) => {
4
+ pluginManager.addAdapterType(() => new AdapterType({
5
+ name: 'FromConfigAdapter',
6
+ configSchema,
7
+ getAdapterClass: () => import('./FromConfigAdapter').then(r => r.default),
8
+ adapterMetadata: {
9
+ hiddenFromGUI: true,
10
+ },
11
+ }));
12
+ };
7
13
  //# sourceMappingURL=index.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,qBAAqB,CAAA;AAC7D,OAAO,EAAE,OAAO,IAAI,mBAAmB,EAAE,MAAM,4BAA4B,CAAA;AAC3E,OAAO,EAAE,OAAO,IAAI,oBAAoB,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,cAAc,CAAA;AACtD,OAAO,EAAE,OAAO,IAAI,mBAAmB,EAAE,MAAM,qBAAqB,CAAA;AACpE,OAAO,EAAE,OAAO,IAAI,oBAAoB,EAAE,MAAM,sBAAsB,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,qCAAqC,CAAA;AAEjE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,mBAAmB;QACzB,YAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,qBAAqB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;QACpD,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;KACF,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
@@ -1,6 +1,6 @@
1
1
  import { BaseAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
2
2
  import { readConfObject, } from '@jbrowse/core/configuration';
3
- import FromConfigAdapter from './FromConfigAdapter';
3
+ import FromConfigAdapter from '../FromConfigAdapter/FromConfigAdapter';
4
4
  /**
5
5
  * Adapter that just returns the features defined in its `features` configuration
6
6
  * key, like:
@@ -0,0 +1 @@
1
+ {"version":3,"file":"FromConfigRegionsAdapter.js","sourceRoot":"","sources":["../../src/FromConfigRegionsAdapter/FromConfigRegionsAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,WAAW,GAEZ,MAAM,yCAAyC,CAAA;AAKhD,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAIpC,OAAO,iBAAiB,MAAM,wCAAwC,CAAA;AAEtE;;;;GAIG;AACH,MAAM,CAAC,OAAO,OAAO,wBACnB,SAAQ,WAAW;IAKnB,YACE,MAA6B,EAC7B,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,QAAQ,GAAG,cAAc,CAC7B,MAAM,EACN,UAAU,CACkB,CAAA;QAC9B,IAAI,CAAC,QAAQ,GAAG,iBAAiB,CAAC,YAAY,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAA;IAChE,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,UAAU;QACd,MAAM,OAAO,GAAG,EAAE,CAAA;QAElB,wEAAwE;QACxE,KAAK,MAAM,CAAC,OAAO,EAAE,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,EAAE;YAC/C,IAAI,aAAa,CAAA;YACjB,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE;gBAC9B,IACE,aAAa;oBACb,aAAa,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;oBACzC,aAAa,CAAC,KAAK,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EACzC;oBACA,aAAa,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;iBACvC;qBAAM;oBACL,IAAI,aAAa,EAAE;wBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;qBAC5B;oBACD,aAAa,GAAG;wBACd,OAAO;wBACP,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;qBACxB,CAAA;iBACF;aACF;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;aAC5B;SACF;QAED,8BAA8B;QAC9B,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAA;QAE1D,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;CACzC"}
@@ -17,4 +17,4 @@ const regionsConfigSchema = ConfigurationSchema('FromConfigRegionsAdapter', {
17
17
  implicitIdentifier: 'adapterId',
18
18
  });
19
19
  export default regionsConfigSchema;
20
- //# sourceMappingURL=fromConfigRegions.js.map
20
+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigRegionsAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,mBAAmB,CAC7C,0BAA0B,EAC1B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD;IACE,eAAe,EAAE,IAAI;IACrB,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AACD,eAAe,mBAAmB,CAAA"}
@@ -0,0 +1,3 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ declare const _default: (pluginManager: PluginManager) => void;
3
+ export default _default;
@@ -0,0 +1,13 @@
1
+ import { AdapterType } from '@jbrowse/core/pluggableElementTypes';
2
+ import configSchema from './configSchema';
3
+ export default (pluginManager) => {
4
+ pluginManager.addAdapterType(() => new AdapterType({
5
+ name: 'FromConfigRegionsAdapter',
6
+ configSchema,
7
+ getAdapterClass: () => import('./FromConfigRegionsAdapter').then(r => r.default),
8
+ adapterMetadata: {
9
+ hiddenFromGUI: true,
10
+ },
11
+ }));
12
+ };
13
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigRegionsAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,qCAAqC,CAAA;AAEjE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,0BAA0B;QAChC,YAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,4BAA4B,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;QAC3D,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;KACF,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
@@ -1,7 +1,7 @@
1
1
  import { Feature } from '@jbrowse/core/util/simpleFeature';
2
2
  import { NoAssemblyRegion } from '@jbrowse/core/util/types';
3
- import FromConfigAdapter from './FromConfigAdapter';
4
3
  import { RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
4
+ import FromConfigAdapter from '../FromConfigAdapter/FromConfigAdapter';
5
5
  export default class FromConfigSequenceAdapter extends FromConfigAdapter implements RegionsAdapter {
6
6
  /**
7
7
  * Fetch features for a certain region
@@ -1,7 +1,8 @@
1
1
  import SimpleFeature from '@jbrowse/core/util/simpleFeature';
2
2
  import { ObservableCreate } from '@jbrowse/core/util/rxjs';
3
3
  import { toArray } from 'rxjs/operators';
4
- import FromConfigAdapter from './FromConfigAdapter';
4
+ // locals
5
+ import FromConfigAdapter from '../FromConfigAdapter/FromConfigAdapter';
5
6
  export default class FromConfigSequenceAdapter extends FromConfigAdapter {
6
7
  /**
7
8
  * Fetch features for a certain region
@@ -0,0 +1 @@
1
+ {"version":3,"file":"FromConfigSequenceAdapter.js","sourceRoot":"","sources":["../../src/FromConfigSequenceAdapter/FromConfigSequenceAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,aAA0B,MAAM,kCAAkC,CAAA;AACzE,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAE1D,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AAGxC,SAAS;AACT,OAAO,iBAAiB,MAAM,wCAAwC,CAAA;AAEtE,MAAM,CAAC,OAAO,OAAO,yBACnB,SAAQ,iBAAiB;IAGzB;;;;OAIG;IACH,WAAW,CAAC,MAAwB;QAClC,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,KAAK,GAAG,MAAM,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,SAAS,EAAE,CAAA;YACzE,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;YACrB,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;gBAChB,GAAG,IAAI,CAAC,MAAM,EAAE;gBAChB,QAAQ,EAAE,GAAG,IAAI,CAAC,EAAE,EAAE,IAAI,MAAM,CAAC,KAAK,IAAI,MAAM,CAAC,GAAG,EAAE;gBACtD,GAAG,EAAE,MAAM,CAAC,GAAG;gBACf,KAAK,EAAE,MAAM,CAAC,KAAK;gBACnB,GAAG,EAAE,IAAI;qBACN,GAAG,CAAC,KAAK,CAAC;qBACV,KAAK,CACJ,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,EAC7C,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,CAC5C;aACJ,CAAC,CACH,CAAA;YAED,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,UAAU;QACd,MAAM,OAAO,GAAG,EAAE,CAAA;QAElB,wEAAwE;QACxE,KAAK,MAAM,CAAC,OAAO,EAAE,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,EAAE;YAC/C,IAAI,aAAa,CAAA;YACjB,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE;gBAC9B,IACE,aAAa;oBACb,aAAa,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;oBACzC,aAAa,CAAC,KAAK,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EACzC;oBACA,aAAa,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;iBACvC;qBAAM;oBACL,IAAI,aAAa,EAAE;wBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;qBAC5B;oBACD,aAAa,GAAG;wBACd,OAAO;wBACP,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;qBACxB,CAAA;iBACF;aACF;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;aAC5B;SACF;QAED,OAAO,OAAO,CAAA;IAChB,CAAC;IAED;;;;OAIG;IACH,aAAa,EAAC,gBAAgB,IAAS,CAAC;CACzC"}
@@ -13,4 +13,4 @@ const sequenceConfigSchema = ConfigurationSchema('FromConfigSequenceAdapter', {
13
13
  },
14
14
  }, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
15
15
  export default sequenceConfigSchema;
16
- //# sourceMappingURL=fromConfigSequence.js.map
16
+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigSequenceAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,oBAAoB,GAAG,mBAAmB,CAC9C,2BAA2B,EAC3B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,eAAe,oBAAoB,CAAA"}
@@ -0,0 +1,3 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ declare const _default: (pluginManager: PluginManager) => void;
3
+ export default _default;
@@ -0,0 +1,13 @@
1
+ import { AdapterType } from '@jbrowse/core/pluggableElementTypes';
2
+ import configSchema from './configSchema';
3
+ export default (pluginManager) => {
4
+ pluginManager.addAdapterType(() => new AdapterType({
5
+ name: 'FromConfigSequenceAdapter',
6
+ configSchema,
7
+ getAdapterClass: () => import('./FromConfigSequenceAdapter').then(r => r.default),
8
+ adapterMetadata: {
9
+ hiddenFromGUI: true,
10
+ },
11
+ }));
12
+ };
13
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigSequenceAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,qCAAqC,CAAA;AAGjE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,2BAA2B;QACjC,YAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,6BAA6B,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;QAC5D,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;KACF,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
@@ -1,2 +1,3 @@
1
- export { default as AdapterClass } from './RefNameAliasAdapter';
2
- export { default as configSchema } from './configSchema';
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ declare const _default: (pluginManager: PluginManager) => void;
3
+ export default _default;
@@ -1,3 +1,13 @@
1
- export { default as AdapterClass } from './RefNameAliasAdapter';
2
- export { default as configSchema } from './configSchema';
1
+ import { AdapterType } from '@jbrowse/core/pluggableElementTypes';
2
+ import configSchema from './configSchema';
3
+ export default (pluginManager) => {
4
+ pluginManager.addAdapterType(() => new AdapterType({
5
+ name: 'RefNameAliasAdapter',
6
+ configSchema,
7
+ getAdapterClass: () => import('./RefNameAliasAdapter').then(r => r.default),
8
+ adapterMetadata: {
9
+ hiddenFromGUI: true,
10
+ },
11
+ }));
12
+ };
3
13
  //# sourceMappingURL=index.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,uBAAuB,CAAA;AAC/D,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,gBAAgB,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,qCAAqC,CAAA;AAGjE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,qBAAqB;QAC3B,YAAY;QACZ,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,uBAAuB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;QACtD,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;KACF,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
package/esm/index.js CHANGED
@@ -1,10 +1,11 @@
1
1
  import { lazy } from 'react';
2
- import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType';
3
2
  import WidgetType from '@jbrowse/core/pluggableElementTypes/WidgetType';
4
3
  import Plugin from '@jbrowse/core/Plugin';
5
4
  import { configSchema as ConfigurationEditorConfigSchema, HeadingComponent as ConfigurationEditorHeadingComponent, stateModelFactory as ConfigurationEditorStateModelFactory, } from './ConfigurationEditorWidget';
6
- import { configSchema as fromConfigAdapterConfigSchema, regionsConfigSchema as fromConfigRegionsAdapterConfigSchema, sequenceConfigSchema as fromConfigSequenceAdapterConfigSchema, } from './FromConfigAdapter';
7
- import { configSchema as refNameAliasAdapterConfigSchema } from './RefNameAliasAdapter';
5
+ import FromConfigAdapterF from './FromConfigAdapter';
6
+ import FromConfigRegionsAdapterF from './FromConfigRegionsAdapter';
7
+ import FromConfigSequenceAdapterF from './FromConfigSequenceAdapter';
8
+ import RefNameAliasAdapterF from './RefNameAliasAdapter';
8
9
  const LazyConfigurationEditorComponent = lazy(() => import('./ConfigurationEditorWidget/components/ConfigurationEditor'));
9
10
  export default class extends Plugin {
10
11
  constructor() {
@@ -12,50 +13,10 @@ export default class extends Plugin {
12
13
  this.name = 'ConfigurationPlugin';
13
14
  }
14
15
  install(pluginManager) {
15
- pluginManager.addAdapterType(() => new AdapterType({
16
- name: 'FromConfigAdapter',
17
- configSchema: fromConfigAdapterConfigSchema,
18
- getAdapterClass: () => import('./FromConfigAdapter/FromConfigAdapter').then(r => r.default),
19
- adapterMetadata: {
20
- category: null,
21
- hiddenFromGUI: true,
22
- displayName: null,
23
- description: null,
24
- },
25
- }));
26
- pluginManager.addAdapterType(() => new AdapterType({
27
- name: 'FromConfigRegionsAdapter',
28
- configSchema: fromConfigRegionsAdapterConfigSchema,
29
- getAdapterClass: () => import('./FromConfigAdapter/FromConfigRegionsAdapter').then(r => r.default),
30
- adapterMetadata: {
31
- category: null,
32
- hiddenFromGUI: true,
33
- displayName: null,
34
- description: null,
35
- },
36
- }));
37
- pluginManager.addAdapterType(() => new AdapterType({
38
- name: 'FromConfigSequenceAdapter',
39
- configSchema: fromConfigSequenceAdapterConfigSchema,
40
- getAdapterClass: () => import('./FromConfigAdapter/FromConfigSequenceAdapter').then(r => r.default),
41
- adapterMetadata: {
42
- category: null,
43
- hiddenFromGUI: true,
44
- displayName: null,
45
- description: null,
46
- },
47
- }));
48
- pluginManager.addAdapterType(() => new AdapterType({
49
- name: 'RefNameAliasAdapter',
50
- configSchema: refNameAliasAdapterConfigSchema,
51
- getAdapterClass: () => import('./RefNameAliasAdapter/RefNameAliasAdapter').then(r => r.default),
52
- adapterMetadata: {
53
- category: null,
54
- hiddenFromGUI: true,
55
- displayName: null,
56
- description: null,
57
- },
58
- }));
16
+ FromConfigAdapterF(pluginManager);
17
+ FromConfigRegionsAdapterF(pluginManager);
18
+ FromConfigSequenceAdapterF(pluginManager);
19
+ RefNameAliasAdapterF(pluginManager);
59
20
  pluginManager.addWidgetType(() => {
60
21
  return new WidgetType({
61
22
  name: 'ConfigurationEditorWidget',
package/esm/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAC5B,OAAO,WAAW,MAAM,iDAAiD,CAAA;AACzE,OAAO,UAAU,MAAM,gDAAgD,CAAA;AACvE,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAEzC,OAAO,EACL,YAAY,IAAI,+BAA+B,EAC/C,gBAAgB,IAAI,mCAAmC,EACvD,iBAAiB,IAAI,oCAAoC,GAC1D,MAAM,6BAA6B,CAAA;AACpC,OAAO,EACL,YAAY,IAAI,6BAA6B,EAC7C,mBAAmB,IAAI,oCAAoC,EAC3D,oBAAoB,IAAI,qCAAqC,GAC9D,MAAM,qBAAqB,CAAA;AAC5B,OAAO,EAAE,YAAY,IAAI,+BAA+B,EAAE,MAAM,uBAAuB,CAAA;AAEvF,MAAM,gCAAgC,GAAG,IAAI,CAC3C,GAAG,EAAE,CAAC,MAAM,CAAC,4DAA4D,CAAC,CAC3E,CAAA;AAED,MAAM,CAAC,OAAO,MAAO,SAAQ,MAAM;IAAnC;;QACE,SAAI,GAAG,qBAAqB,CAAA;IAkF9B,CAAC;IAhFC,OAAO,CAAC,aAA4B;QAClC,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;YACd,IAAI,EAAE,mBAAmB;YACzB,YAAY,EAAE,6BAA6B;YAC3C,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,uCAAuC,CAAC,CAAC,IAAI,CAClD,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CACf;YACH,eAAe,EAAE;gBACf,QAAQ,EAAE,IAAI;gBACd,aAAa,EAAE,IAAI;gBACnB,WAAW,EAAE,IAAI;gBACjB,WAAW,EAAE,IAAI;aAClB;SACF,CAAC,CACL,CAAA;QACD,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;YACd,IAAI,EAAE,0BAA0B;YAChC,YAAY,EAAE,oCAAoC;YAClD,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,8CAA8C,CAAC,CAAC,IAAI,CACzD,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CACf;YACH,eAAe,EAAE;gBACf,QAAQ,EAAE,IAAI;gBACd,aAAa,EAAE,IAAI;gBACnB,WAAW,EAAE,IAAI;gBACjB,WAAW,EAAE,IAAI;aAClB;SACF,CAAC,CACL,CAAA;QACD,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;YACd,IAAI,EAAE,2BAA2B;YACjC,YAAY,EAAE,qCAAqC;YACnD,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,+CAA+C,CAAC,CAAC,IAAI,CAC1D,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CACf;YACH,eAAe,EAAE;gBACf,QAAQ,EAAE,IAAI;gBACd,aAAa,EAAE,IAAI;gBACnB,WAAW,EAAE,IAAI;gBACjB,WAAW,EAAE,IAAI;aAClB;SACF,CAAC,CACL,CAAA;QACD,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;YACd,IAAI,EAAE,qBAAqB;YAC3B,YAAY,EAAE,+BAA+B;YAC7C,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,2CAA2C,CAAC,CAAC,IAAI,CACtD,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CACf;YACH,eAAe,EAAE;gBACf,QAAQ,EAAE,IAAI;gBACd,aAAa,EAAE,IAAI;gBACnB,WAAW,EAAE,IAAI;gBACjB,WAAW,EAAE,IAAI;aAClB;SACF,CAAC,CACL,CAAA;QAED,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;YAC/B,OAAO,IAAI,UAAU,CAAC;gBACpB,IAAI,EAAE,2BAA2B;gBACjC,gBAAgB,EAAE,mCAAmC;gBACrD,YAAY,EAAE,+BAA+B;gBAC7C,UAAU,EAAE,oCAAoC,CAAC,aAAa,CAAC;gBAC/D,cAAc,EAAE,gCAAgC;aACjD,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;IACJ,CAAC;CACF;AAED,OAAO,EAAE,OAAO,IAAI,UAAU,EAAE,MAAM,mDAAmD,CAAA;AAEzF,OAAO,EAAE,gCAAgC,IAAI,mBAAmB,EAAE,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAC5B,OAAO,UAAU,MAAM,gDAAgD,CAAA;AACvE,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAEzC,OAAO,EACL,YAAY,IAAI,+BAA+B,EAC/C,gBAAgB,IAAI,mCAAmC,EACvD,iBAAiB,IAAI,oCAAoC,GAC1D,MAAM,6BAA6B,CAAA;AACpC,OAAO,kBAAkB,MAAM,qBAAqB,CAAA;AACpD,OAAO,yBAAyB,MAAM,4BAA4B,CAAA;AAClE,OAAO,0BAA0B,MAAM,6BAA6B,CAAA;AACpE,OAAO,oBAAoB,MAAM,uBAAuB,CAAA;AAExD,MAAM,gCAAgC,GAAG,IAAI,CAC3C,GAAG,EAAE,CAAC,MAAM,CAAC,4DAA4D,CAAC,CAC3E,CAAA;AAED,MAAM,CAAC,OAAO,MAAO,SAAQ,MAAM;IAAnC;;QACE,SAAI,GAAG,qBAAqB,CAAA;IAkB9B,CAAC;IAhBC,OAAO,CAAC,aAA4B;QAClC,kBAAkB,CAAC,aAAa,CAAC,CAAA;QACjC,yBAAyB,CAAC,aAAa,CAAC,CAAA;QACxC,0BAA0B,CAAC,aAAa,CAAC,CAAA;QACzC,oBAAoB,CAAC,aAAa,CAAC,CAAA;QAEnC,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;YAC/B,OAAO,IAAI,UAAU,CAAC;gBACpB,IAAI,EAAE,2BAA2B;gBACjC,gBAAgB,EAAE,mCAAmC;gBACrD,YAAY,EAAE,+BAA+B;gBAC7C,UAAU,EAAE,oCAAoC,CAAC,aAAa,CAAC;gBAC/D,cAAc,EAAE,gCAAgC;aACjD,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;IACJ,CAAC;CACF;AAED,OAAO,EAAE,OAAO,IAAI,UAAU,EAAE,MAAM,mDAAmD,CAAA;AAEzF,OAAO,EAAE,gCAAgC,IAAI,mBAAmB,EAAE,CAAA"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-config",
3
- "version": "2.2.2",
3
+ "version": "2.3.0",
4
4
  "description": "JBrowse 2 config utilities",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -46,11 +46,10 @@
46
46
  "mobx": "^6.0.0",
47
47
  "mobx-react": "^7.0.0",
48
48
  "mobx-state-tree": "^5.0.0",
49
- "prop-types": "^15.0.0",
50
49
  "react": ">=16.8.0",
51
50
  "react-dom": ">=16.8.0",
52
51
  "rxjs": "^6.0.0",
53
- "tss-react": "^3.0.0"
52
+ "tss-react": "^4.0.0"
54
53
  },
55
54
  "publishConfig": {
56
55
  "access": "public"
@@ -58,5 +57,5 @@
58
57
  "distModule": "esm/index.js",
59
58
  "srcModule": "src/index.ts",
60
59
  "module": "esm/index.js",
61
- "gitHead": "abbc00e8feedbc58de84a7a3e735ec0224909b29"
60
+ "gitHead": "a85b280a8af4d1a11e81ab42913f5f6049e6e580"
62
61
  }
@@ -1,6 +1,6 @@
1
1
  import { toArray } from 'rxjs/operators'
2
2
  import Adapter from './FromConfigAdapter'
3
- import configSchema from './fromConfig'
3
+ import configSchema from './configSchema'
4
4
 
5
5
  test('adapter can fetch features', async () => {
6
6
  const features = [
@@ -1,6 +1,18 @@
1
- export { default as AdapterClass } from './FromConfigAdapter'
2
- export { default as RegionsAdapterClass } from './FromConfigRegionsAdapter'
3
- export { default as SequenceAdapterClass } from './FromConfigSequenceAdapter'
4
- export { default as configSchema } from './fromConfig'
5
- export { default as regionsConfigSchema } from './fromConfigRegions'
6
- export { default as sequenceConfigSchema } from './fromConfigSequence'
1
+ import { AdapterType } from '@jbrowse/core/pluggableElementTypes'
2
+ import PluginManager from '@jbrowse/core/PluginManager'
3
+ import configSchema from './configSchema'
4
+
5
+ export default (pluginManager: PluginManager) => {
6
+ pluginManager.addAdapterType(
7
+ () =>
8
+ new AdapterType({
9
+ name: 'FromConfigAdapter',
10
+ configSchema,
11
+ getAdapterClass: () =>
12
+ import('./FromConfigAdapter').then(r => r.default),
13
+ adapterMetadata: {
14
+ hiddenFromGUI: true,
15
+ },
16
+ }),
17
+ )
18
+ }
@@ -1,5 +1,5 @@
1
1
  import Adapter from './FromConfigRegionsAdapter'
2
- import regionsConfigSchema from './fromConfigRegions'
2
+ import regionsConfigSchema from './configSchema'
3
3
 
4
4
  test('adapter can fetch regions 1', async () => {
5
5
  const features = [
@@ -10,10 +10,11 @@ import {
10
10
  AnyConfigurationModel,
11
11
  readConfObject,
12
12
  } from '@jbrowse/core/configuration'
13
- import FromConfigAdapter from './FromConfigAdapter'
14
13
  import PluginManager from '@jbrowse/core/PluginManager'
15
14
  import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache'
16
15
 
16
+ import FromConfigAdapter from '../FromConfigAdapter/FromConfigAdapter'
17
+
17
18
  /**
18
19
  * Adapter that just returns the features defined in its `features` configuration
19
20
  * key, like:
@@ -0,0 +1,18 @@
1
+ import { AdapterType } from '@jbrowse/core/pluggableElementTypes'
2
+ import PluginManager from '@jbrowse/core/PluginManager'
3
+ import configSchema from './configSchema'
4
+
5
+ export default (pluginManager: PluginManager) => {
6
+ pluginManager.addAdapterType(
7
+ () =>
8
+ new AdapterType({
9
+ name: 'FromConfigRegionsAdapter',
10
+ configSchema,
11
+ getAdapterClass: () =>
12
+ import('./FromConfigRegionsAdapter').then(r => r.default),
13
+ adapterMetadata: {
14
+ hiddenFromGUI: true,
15
+ },
16
+ }),
17
+ )
18
+ }
@@ -1,6 +1,6 @@
1
1
  import { toArray } from 'rxjs/operators'
2
2
  import Adapter from './FromConfigSequenceAdapter'
3
- import sequenceConfigSchema from './fromConfigSequence'
3
+ import sequenceConfigSchema from './configSchema'
4
4
 
5
5
  test('adapter can fetch sequences when there is just one feature representing whole refseq', async () => {
6
6
  const features = [
@@ -2,9 +2,11 @@ import SimpleFeature, { Feature } from '@jbrowse/core/util/simpleFeature'
2
2
  import { ObservableCreate } from '@jbrowse/core/util/rxjs'
3
3
  import { NoAssemblyRegion } from '@jbrowse/core/util/types'
4
4
  import { toArray } from 'rxjs/operators'
5
- import FromConfigAdapter from './FromConfigAdapter'
6
5
  import { RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter'
7
6
 
7
+ // locals
8
+ import FromConfigAdapter from '../FromConfigAdapter/FromConfigAdapter'
9
+
8
10
  export default class FromConfigSequenceAdapter
9
11
  extends FromConfigAdapter
10
12
  implements RegionsAdapter
@@ -0,0 +1,19 @@
1
+ import { AdapterType } from '@jbrowse/core/pluggableElementTypes'
2
+ import PluginManager from '@jbrowse/core/PluginManager'
3
+
4
+ import configSchema from './configSchema'
5
+
6
+ export default (pluginManager: PluginManager) => {
7
+ pluginManager.addAdapterType(
8
+ () =>
9
+ new AdapterType({
10
+ name: 'FromConfigSequenceAdapter',
11
+ configSchema,
12
+ getAdapterClass: () =>
13
+ import('./FromConfigSequenceAdapter').then(r => r.default),
14
+ adapterMetadata: {
15
+ hiddenFromGUI: true,
16
+ },
17
+ }),
18
+ )
19
+ }
@@ -1,2 +1,19 @@
1
- export { default as AdapterClass } from './RefNameAliasAdapter'
2
- export { default as configSchema } from './configSchema'
1
+ import { AdapterType } from '@jbrowse/core/pluggableElementTypes'
2
+ import PluginManager from '@jbrowse/core/PluginManager'
3
+
4
+ import configSchema from './configSchema'
5
+
6
+ export default (pluginManager: PluginManager) => {
7
+ pluginManager.addAdapterType(
8
+ () =>
9
+ new AdapterType({
10
+ name: 'RefNameAliasAdapter',
11
+ configSchema,
12
+ getAdapterClass: () =>
13
+ import('./RefNameAliasAdapter').then(r => r.default),
14
+ adapterMetadata: {
15
+ hiddenFromGUI: true,
16
+ },
17
+ }),
18
+ )
19
+ }
package/src/index.ts CHANGED
@@ -1,5 +1,4 @@
1
1
  import { lazy } from 'react'
2
- import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType'
3
2
  import WidgetType from '@jbrowse/core/pluggableElementTypes/WidgetType'
4
3
  import Plugin from '@jbrowse/core/Plugin'
5
4
  import PluginManager from '@jbrowse/core/PluginManager'
@@ -8,12 +7,10 @@ import {
8
7
  HeadingComponent as ConfigurationEditorHeadingComponent,
9
8
  stateModelFactory as ConfigurationEditorStateModelFactory,
10
9
  } from './ConfigurationEditorWidget'
11
- import {
12
- configSchema as fromConfigAdapterConfigSchema,
13
- regionsConfigSchema as fromConfigRegionsAdapterConfigSchema,
14
- sequenceConfigSchema as fromConfigSequenceAdapterConfigSchema,
15
- } from './FromConfigAdapter'
16
- import { configSchema as refNameAliasAdapterConfigSchema } from './RefNameAliasAdapter'
10
+ import FromConfigAdapterF from './FromConfigAdapter'
11
+ import FromConfigRegionsAdapterF from './FromConfigRegionsAdapter'
12
+ import FromConfigSequenceAdapterF from './FromConfigSequenceAdapter'
13
+ import RefNameAliasAdapterF from './RefNameAliasAdapter'
17
14
 
18
15
  const LazyConfigurationEditorComponent = lazy(
19
16
  () => import('./ConfigurationEditorWidget/components/ConfigurationEditor'),
@@ -23,74 +20,10 @@ export default class extends Plugin {
23
20
  name = 'ConfigurationPlugin'
24
21
 
25
22
  install(pluginManager: PluginManager) {
26
- pluginManager.addAdapterType(
27
- () =>
28
- new AdapterType({
29
- name: 'FromConfigAdapter',
30
- configSchema: fromConfigAdapterConfigSchema,
31
- getAdapterClass: () =>
32
- import('./FromConfigAdapter/FromConfigAdapter').then(
33
- r => r.default,
34
- ),
35
- adapterMetadata: {
36
- category: null,
37
- hiddenFromGUI: true,
38
- displayName: null,
39
- description: null,
40
- },
41
- }),
42
- )
43
- pluginManager.addAdapterType(
44
- () =>
45
- new AdapterType({
46
- name: 'FromConfigRegionsAdapter',
47
- configSchema: fromConfigRegionsAdapterConfigSchema,
48
- getAdapterClass: () =>
49
- import('./FromConfigAdapter/FromConfigRegionsAdapter').then(
50
- r => r.default,
51
- ),
52
- adapterMetadata: {
53
- category: null,
54
- hiddenFromGUI: true,
55
- displayName: null,
56
- description: null,
57
- },
58
- }),
59
- )
60
- pluginManager.addAdapterType(
61
- () =>
62
- new AdapterType({
63
- name: 'FromConfigSequenceAdapter',
64
- configSchema: fromConfigSequenceAdapterConfigSchema,
65
- getAdapterClass: () =>
66
- import('./FromConfigAdapter/FromConfigSequenceAdapter').then(
67
- r => r.default,
68
- ),
69
- adapterMetadata: {
70
- category: null,
71
- hiddenFromGUI: true,
72
- displayName: null,
73
- description: null,
74
- },
75
- }),
76
- )
77
- pluginManager.addAdapterType(
78
- () =>
79
- new AdapterType({
80
- name: 'RefNameAliasAdapter',
81
- configSchema: refNameAliasAdapterConfigSchema,
82
- getAdapterClass: () =>
83
- import('./RefNameAliasAdapter/RefNameAliasAdapter').then(
84
- r => r.default,
85
- ),
86
- adapterMetadata: {
87
- category: null,
88
- hiddenFromGUI: true,
89
- displayName: null,
90
- description: null,
91
- },
92
- }),
93
- )
23
+ FromConfigAdapterF(pluginManager)
24
+ FromConfigRegionsAdapterF(pluginManager)
25
+ FromConfigSequenceAdapterF(pluginManager)
26
+ RefNameAliasAdapterF(pluginManager)
94
27
 
95
28
  pluginManager.addWidgetType(() => {
96
29
  return new WidgetType({
@@ -1 +0,0 @@
1
- {"version":3,"file":"FromConfigRegionsAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigRegionsAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAKhD,+DAGoC;AACpC,4EAAmD;AAInD;;;;GAIG;AACH,MAAqB,wBACnB,SAAQ,yBAAW;IAKnB,YACE,MAA6B,EAC7B,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,QAAQ,GAAG,IAAA,8BAAc,EAC7B,MAAM,EACN,UAAU,CACkB,CAAA;QAC9B,IAAI,CAAC,QAAQ,GAAG,2BAAiB,CAAC,YAAY,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAA;IAChE,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,UAAU;QACd,MAAM,OAAO,GAAG,EAAE,CAAA;QAElB,wEAAwE;QACxE,KAAK,MAAM,CAAC,OAAO,EAAE,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,EAAE;YAC/C,IAAI,aAAa,CAAA;YACjB,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE;gBAC9B,IACE,aAAa;oBACb,aAAa,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;oBACzC,aAAa,CAAC,KAAK,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EACzC;oBACA,aAAa,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;iBACvC;qBAAM;oBACL,IAAI,aAAa,EAAE;wBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;qBAC5B;oBACD,aAAa,GAAG;wBACd,OAAO;wBACP,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;qBACxB,CAAA;iBACF;aACF;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;aAC5B;SACF;QAED,8BAA8B;QAC9B,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAA;QAE1D,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;CACzC;AA1DD,2CA0DC"}
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