@jbrowse/plugin-config 2.2.0 → 2.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/FromConfigAdapter/fromConfig.js +0 -7
- package/dist/FromConfigAdapter/fromConfig.js.map +1 -1
- package/dist/FromConfigAdapter/fromConfigRegions.js +0 -7
- package/dist/FromConfigAdapter/fromConfigRegions.js.map +1 -1
- package/dist/FromConfigAdapter/fromConfigSequence.js +0 -7
- package/dist/FromConfigAdapter/fromConfigSequence.js.map +1 -1
- package/dist/RefNameAliasAdapter/configSchema.js +4 -0
- package/dist/RefNameAliasAdapter/configSchema.js.map +1 -1
- package/esm/FromConfigAdapter/fromConfig.js +0 -7
- package/esm/FromConfigAdapter/fromConfig.js.map +1 -1
- package/esm/FromConfigAdapter/fromConfigRegions.js +0 -7
- package/esm/FromConfigAdapter/fromConfigRegions.js.map +1 -1
- package/esm/FromConfigAdapter/fromConfigSequence.js +0 -7
- package/esm/FromConfigAdapter/fromConfigSequence.js.map +1 -1
- package/esm/RefNameAliasAdapter/configSchema.js +4 -0
- package/esm/RefNameAliasAdapter/configSchema.js.map +1 -1
- package/package.json +2 -2
- package/src/FromConfigAdapter/FromConfigAdapter.test.ts +1 -1
- package/src/FromConfigAdapter/fromConfig.ts +0 -7
- package/src/FromConfigAdapter/fromConfigRegions.ts +0 -7
- package/src/FromConfigAdapter/fromConfigSequence.ts +0 -7
- package/src/RefNameAliasAdapter/configSchema.ts +4 -0
- package/src/__snapshots__/index.test.js.snap +2 -2
- package/dist/FromConfigAdapter/configSchema.d.ts +0 -1
- package/dist/FromConfigAdapter/configSchema.js +0 -25
- package/dist/FromConfigAdapter/configSchema.js.map +0 -1
- package/esm/FromConfigAdapter/configSchema.d.ts +0 -1
- package/esm/FromConfigAdapter/configSchema.js +0 -22
- package/esm/FromConfigAdapter/configSchema.js.map +0 -1
- package/src/FromConfigAdapter/configSchema.ts +0 -27
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@@ -13,13 +13,6 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('FromConfigAdapter
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type: 'frozen',
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defaultValue: [],
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},
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/**
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* #slot
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*/
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featureClass: {
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type: 'string',
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defaultValue: 'SimpleFeature',
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},
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}, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
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exports.default = configSchema;
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//# sourceMappingURL=fromConfig.js.map
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@@ -1 +1 @@
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-
{"version":3,"file":"fromConfig.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfig.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;
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{"version":3,"file":"fromConfig.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfig.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}
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@@ -14,13 +14,6 @@ const regionsConfigSchema = (0, configuration_1.ConfigurationSchema)('FromConfig
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type: 'frozen',
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defaultValue: [],
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},
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/**
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* #slot
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*/
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featureClass: {
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type: 'string',
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defaultValue: 'SimpleFeature',
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},
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}, {
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explicitlyTyped: true,
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implicitIdentifier: 'adapterId',
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@@ -1 +1 @@
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{"version":3,"file":"fromConfigRegions.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigRegions.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,IAAA,mCAAmB,EAC7C,0BAA0B,EAC1B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;
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{"version":3,"file":"fromConfigRegions.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigRegions.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,IAAA,mCAAmB,EAC7C,0BAA0B,EAC1B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD;IACE,eAAe,EAAE,IAAI;IACrB,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AACD,kBAAe,mBAAmB,CAAA"}
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@@ -13,13 +13,6 @@ const sequenceConfigSchema = (0, configuration_1.ConfigurationSchema)('FromConfi
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type: 'frozen',
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defaultValue: [],
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},
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* #slot
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featureClass: {
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type: 'string',
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defaultValue: 'SimpleFeature',
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},
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}, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
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exports.default = sequenceConfigSchema;
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//# sourceMappingURL=fromConfigSequence.js.map
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{"version":3,"file":"fromConfigSequence.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigSequence.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,oBAAoB,GAAG,IAAA,mCAAmB,EAC9C,2BAA2B,EAC3B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;
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{"version":3,"file":"fromConfigSequence.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigSequence.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,oBAAoB,GAAG,IAAA,mCAAmB,EAC9C,2BAA2B,EAC3B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,kBAAe,oBAAoB,CAAA"}
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@@ -3,6 +3,8 @@ Object.defineProperty(exports, "__esModule", { value: true });
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const configuration_1 = require("@jbrowse/core/configuration");
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/**
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* #config RefNameAliasAdapter
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* can read "chromAliases" type files from UCSC or any tab separated file of
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* refName aliases
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*/
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function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
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const RefNameAliasAdapter = (0, configuration_1.ConfigurationSchema)('RefNameAliasAdapter', {
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},
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/**
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* #slot
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* by default, the "ref names that match the fasta" are assumed to be in the
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* first column (0), change this variable if needed
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*/
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refNameColumn: {
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type: 'number',
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@@ -1 +1 @@
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;;;GAIG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,IAAA,mCAAmB,EAC7C,qBAAqB,EACrB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,yBAAyB;YAC9B,YAAY,EAAE,aAAa;SAC5B;KACF;IACD;;;;OAIG;IACH,aAAa,EAAE;QACb,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AAED,kBAAe,mBAAmB,CAAA"}
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@@ -11,13 +11,6 @@ const configSchema = ConfigurationSchema('FromConfigAdapter', {
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type: 'frozen',
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defaultValue: [],
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defaultValue: 'SimpleFeature',
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},
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export default configSchema;
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//# sourceMappingURL=fromConfig.js.map
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{"version":3,"file":"fromConfig.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfig.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,YAAY,GAAG,mBAAmB,CACtC,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;
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{"version":3,"file":"fromConfig.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfig.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,YAAY,GAAG,mBAAmB,CACtC,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,eAAe,YAAY,CAAA"}
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{"version":3,"file":"fromConfigRegions.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigRegions.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,mBAAmB,CAC7C,0BAA0B,EAC1B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;
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{"version":3,"file":"fromConfigRegions.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigRegions.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,mBAAmB,CAC7C,0BAA0B,EAC1B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD;IACE,eAAe,EAAE,IAAI;IACrB,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AACD,eAAe,mBAAmB,CAAA"}
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{"version":3,"file":"fromConfigSequence.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigSequence.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,oBAAoB,GAAG,mBAAmB,CAC9C,2BAA2B,EAC3B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;
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{"version":3,"file":"fromConfigSequence.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigSequence.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,oBAAoB,GAAG,mBAAmB,CAC9C,2BAA2B,EAC3B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,eAAe,oBAAoB,CAAA"}
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;;;GAIG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,mBAAmB,CAC7C,qBAAqB,EACrB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,yBAAyB;YAC9B,YAAY,EAAE,aAAa;SAC5B;KACF;IACD;;;;OAIG;IACH,aAAa,EAAE;QACb,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AAED,eAAe,mBAAmB,CAAA"}
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CHANGED
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{
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"name": "@jbrowse/plugin-config",
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"version": "2.2.
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"description": "JBrowse 2 config utilities",
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"gitHead": "896d175c5d9345049faea8e1155f243c912aac42"
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/**
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18
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-
* #slot
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-
*/
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featureClass: {
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type: 'string',
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defaultValue: 'SimpleFeature',
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-
},
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17
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},
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18
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{ explicitlyTyped: true, implicitIdentifier: 'adapterId' },
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19
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)
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@@ -2,6 +2,8 @@ import { ConfigurationSchema } from '@jbrowse/core/configuration'
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2
2
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3
3
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/**
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4
4
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* #config RefNameAliasAdapter
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5
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+
* can read "chromAliases" type files from UCSC or any tab separated file of
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6
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+
* refName aliases
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5
7
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*/
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6
8
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function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
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7
9
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@@ -20,6 +22,8 @@ const RefNameAliasAdapter = ConfigurationSchema(
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20
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},
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/**
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22
24
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* #slot
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25
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+
* by default, the "ref names that match the fasta" are assumed to be in the
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26
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+
* first column (0), change this variable if needed
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23
27
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*/
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28
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refNameColumn: {
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25
29
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type: 'number',
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@@ -1,9 +1,9 @@
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1
1
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// Jest Snapshot v1, https://goo.gl/fbAQLP
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2
2
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3
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-
exports[`Config editing adds config editor widget 1`] = `
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3
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+
exports[`Config editing adds config editor widget 1`] = `{}`;
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4
4
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5
5
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exports[`Config editing creates proper FromConfigAdapter 1`] = `
|
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6
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-
|
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6
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+
{
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7
7
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"adapterId": "testFromConfigAdapterId",
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8
8
|
"type": "FromConfigAdapter",
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9
9
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}
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@@ -1 +0,0 @@
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1
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-
export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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@@ -1,25 +0,0 @@
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1
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-
"use strict";
|
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2
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-
Object.defineProperty(exports, "__esModule", { value: true });
|
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3
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-
exports.configSchema = void 0;
|
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4
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-
const configuration_1 = require("@jbrowse/core/configuration");
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5
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-
/**
|
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6
|
-
* #config FromConfigAdapter
|
|
7
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-
*/
|
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8
|
-
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
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9
|
-
exports.configSchema = (0, configuration_1.ConfigurationSchema)('FromConfigAdapter', {
|
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10
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-
/**
|
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11
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-
* #slot
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12
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-
*/
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13
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-
features: {
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14
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-
type: 'frozen',
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15
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-
defaultValue: [],
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16
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-
},
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17
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-
/**
|
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18
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-
* #slot
|
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19
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-
*/
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20
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-
featureClass: {
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21
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-
type: 'string',
|
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22
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-
defaultValue: 'SimpleFeature',
|
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23
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-
},
|
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24
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-
}, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
|
|
25
|
-
//# sourceMappingURL=configSchema.js.map
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/configSchema.ts"],"names":[],"mappings":";;;AAAA,+DAAiE;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAE3D,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAC7C,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,eAAe;KAC9B;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA"}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
@@ -1,22 +0,0 @@
|
|
|
1
|
-
import { ConfigurationSchema } from '@jbrowse/core/configuration';
|
|
2
|
-
/**
|
|
3
|
-
* #config FromConfigAdapter
|
|
4
|
-
*/
|
|
5
|
-
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
|
6
|
-
export const configSchema = ConfigurationSchema('FromConfigAdapter', {
|
|
7
|
-
/**
|
|
8
|
-
* #slot
|
|
9
|
-
*/
|
|
10
|
-
features: {
|
|
11
|
-
type: 'frozen',
|
|
12
|
-
defaultValue: [],
|
|
13
|
-
},
|
|
14
|
-
/**
|
|
15
|
-
* #slot
|
|
16
|
-
*/
|
|
17
|
-
featureClass: {
|
|
18
|
-
type: 'string',
|
|
19
|
-
defaultValue: 'SimpleFeature',
|
|
20
|
-
},
|
|
21
|
-
}, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
|
|
22
|
-
//# sourceMappingURL=configSchema.js.map
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,CAAC,MAAM,YAAY,GAAG,mBAAmB,CAC7C,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,eAAe;KAC9B;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA"}
|
|
@@ -1,27 +0,0 @@
|
|
|
1
|
-
import { ConfigurationSchema } from '@jbrowse/core/configuration'
|
|
2
|
-
|
|
3
|
-
/**
|
|
4
|
-
* #config FromConfigAdapter
|
|
5
|
-
*/
|
|
6
|
-
function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
|
|
7
|
-
|
|
8
|
-
export const configSchema = ConfigurationSchema(
|
|
9
|
-
'FromConfigAdapter',
|
|
10
|
-
{
|
|
11
|
-
/**
|
|
12
|
-
* #slot
|
|
13
|
-
*/
|
|
14
|
-
features: {
|
|
15
|
-
type: 'frozen',
|
|
16
|
-
defaultValue: [],
|
|
17
|
-
},
|
|
18
|
-
/**
|
|
19
|
-
* #slot
|
|
20
|
-
*/
|
|
21
|
-
featureClass: {
|
|
22
|
-
type: 'string',
|
|
23
|
-
defaultValue: 'SimpleFeature',
|
|
24
|
-
},
|
|
25
|
-
},
|
|
26
|
-
{ explicitlyTyped: true, implicitIdentifier: 'adapterId' },
|
|
27
|
-
)
|