@jbrowse/plugin-config 2.1.7 → 2.2.0

package/src/FromConfigAdapter/FromConfigSequenceAdapter.test.ts

@@ -1,6 +1,7 @@
 import { toArray } from 'rxjs/operators'
 import Adapter from './FromConfigSequenceAdapter'
-import { sequenceConfigSchema } from './configSchema'
+import sequenceConfigSchema from './fromConfigSequence'
+
 test('adapter can fetch sequences when there is just one feature representing whole refseq', async () => {
   const features = [
     {

package/src/FromConfigAdapter/configSchema.ts

@@ -1,42 +1,23 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration'
 
+/**
+ * #config FromConfigAdapter
+ */
+function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
+
 export const configSchema = ConfigurationSchema(
   'FromConfigAdapter',
   {
+    /**
+     * #slot
+     */
     features: {
       type: 'frozen',
       defaultValue: [],
     },
-    featureClass: {
-      type: 'string',
-      defaultValue: 'SimpleFeature',
-    },
-  },
-  { explicitlyTyped: true, implicitIdentifier: 'adapterId' },
-)
-
-export const regionsConfigSchema = ConfigurationSchema(
-  'FromConfigRegionsAdapter',
-  {
-    features: {
-      type: 'frozen',
-      defaultValue: [],
-    },
-    featureClass: {
-      type: 'string',
-      defaultValue: 'SimpleFeature',
-    },
-  },
-  { explicitlyTyped: true, implicitIdentifier: 'adapterId' },
-)
-
-export const sequenceConfigSchema = ConfigurationSchema(
-  'FromConfigSequenceAdapter',
-  {
-    features: {
-      type: 'frozen',
-      defaultValue: [],
-    },
+    /**
+     * #slot
+     */
     featureClass: {
       type: 'string',
       defaultValue: 'SimpleFeature',

package/src/FromConfigAdapter/fromConfig.ts

@@ -0,0 +1,29 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration'
+
+/**
+ * #config FromConfigAdapter
+ */
+function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
+
+const configSchema = ConfigurationSchema(
+  'FromConfigAdapter',
+  {
+    /**
+     * #slot
+     */
+    features: {
+      type: 'frozen',
+      defaultValue: [],
+    },
+    /**
+     * #slot
+     */
+    featureClass: {
+      type: 'string',
+      defaultValue: 'SimpleFeature',
+    },
+  },
+  { explicitlyTyped: true, implicitIdentifier: 'adapterId' },
+)
+
+export default configSchema

package/src/FromConfigAdapter/fromConfigRegions.ts

@@ -0,0 +1,31 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration'
+/**
+ * #config FromConfigRegionsAdapter
+ * used for specifying refNames+sizes of an assembly
+ */
+function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
+
+const regionsConfigSchema = ConfigurationSchema(
+  'FromConfigRegionsAdapter',
+  {
+    /**
+     * #slot
+     */
+    features: {
+      type: 'frozen',
+      defaultValue: [],
+    },
+    /**
+     * #slot
+     */
+    featureClass: {
+      type: 'string',
+      defaultValue: 'SimpleFeature',
+    },
+  },
+  {
+    explicitlyTyped: true,
+    implicitIdentifier: 'adapterId',
+  },
+)
+export default regionsConfigSchema

package/src/FromConfigAdapter/fromConfigSequence.ts

@@ -0,0 +1,28 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration'
+/**
+ * #config FromConfigSequenceAdapter
+ */
+function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
+
+const sequenceConfigSchema = ConfigurationSchema(
+  'FromConfigSequenceAdapter',
+  {
+    /**
+     * #slot
+     */
+    features: {
+      type: 'frozen',
+      defaultValue: [],
+    },
+    /**
+     * #slot
+     */
+    featureClass: {
+      type: 'string',
+      defaultValue: 'SimpleFeature',
+    },
+  },
+  { explicitlyTyped: true, implicitIdentifier: 'adapterId' },
+)
+
+export default sequenceConfigSchema

package/src/FromConfigAdapter/index.ts

@@ -1,8 +1,6 @@
 export { default as AdapterClass } from './FromConfigAdapter'
 export { default as RegionsAdapterClass } from './FromConfigRegionsAdapter'
 export { default as SequenceAdapterClass } from './FromConfigSequenceAdapter'
-export {
-  configSchema,
-  regionsConfigSchema,
-  sequenceConfigSchema,
-} from './configSchema'
+export { default as configSchema } from './fromConfig'
+export { default as regionsConfigSchema } from './fromConfig'
+export { default as sequenceConfigSchema } from './fromConfigSequence'

package/src/RefNameAliasAdapter/configSchema.ts

@@ -1,8 +1,16 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration'
 
-export default ConfigurationSchema(
+/**
+ * #config RefNameAliasAdapter
+ */
+function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
+
+const RefNameAliasAdapter = ConfigurationSchema(
   'RefNameAliasAdapter',
   {
+    /**
+     * #slot
+     */
     location: {
       type: 'fileLocation',
       defaultValue: {
@@ -10,6 +18,9 @@ export default ConfigurationSchema(
         locationType: 'UriLocation',
       },
     },
+    /**
+     * #slot
+     */
     refNameColumn: {
       type: 'number',
       defaultValue: 0,
@@ -17,3 +28,5 @@ export default ConfigurationSchema(
   },
   { explicitlyTyped: true },
 )
+
+export default RefNameAliasAdapter