@jbrowse/plugin-config 2.1.6 → 2.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ConfigurationEditorWidget/components/SlotEditor.d.ts +2 -2
- package/dist/FromConfigAdapter/FromConfigAdapter.d.ts +1 -1
- package/dist/FromConfigAdapter/FromConfigAdapter.js.map +1 -1
- package/dist/FromConfigAdapter/FromConfigRegionsAdapter.d.ts +2 -3
- package/dist/FromConfigAdapter/FromConfigRegionsAdapter.js.map +1 -1
- package/dist/FromConfigAdapter/configSchema.d.ts +0 -2
- package/dist/FromConfigAdapter/configSchema.js +11 -21
- package/dist/FromConfigAdapter/configSchema.js.map +1 -1
- package/dist/FromConfigAdapter/fromConfig.d.ts +2 -0
- package/dist/FromConfigAdapter/fromConfig.js +25 -0
- package/dist/FromConfigAdapter/fromConfig.js.map +1 -0
- package/dist/FromConfigAdapter/fromConfigRegions.d.ts +2 -0
- package/dist/FromConfigAdapter/fromConfigRegions.js +29 -0
- package/dist/FromConfigAdapter/fromConfigRegions.js.map +1 -0
- package/dist/FromConfigAdapter/fromConfigSequence.d.ts +2 -0
- package/dist/FromConfigAdapter/fromConfigSequence.js +25 -0
- package/dist/FromConfigAdapter/fromConfigSequence.js.map +1 -0
- package/dist/FromConfigAdapter/index.d.ts +3 -1
- package/dist/FromConfigAdapter/index.js +6 -4
- package/dist/FromConfigAdapter/index.js.map +1 -1
- package/dist/RefNameAliasAdapter/configSchema.d.ts +2 -2
- package/dist/RefNameAliasAdapter/configSchema.js +12 -1
- package/dist/RefNameAliasAdapter/configSchema.js.map +1 -1
- package/esm/ConfigurationEditorWidget/components/SlotEditor.d.ts +2 -2
- package/esm/FromConfigAdapter/FromConfigAdapter.d.ts +1 -1
- package/esm/FromConfigAdapter/FromConfigAdapter.js +1 -1
- package/esm/FromConfigAdapter/FromConfigAdapter.js.map +1 -1
- package/esm/FromConfigAdapter/FromConfigRegionsAdapter.d.ts +2 -3
- package/esm/FromConfigAdapter/FromConfigRegionsAdapter.js +1 -1
- package/esm/FromConfigAdapter/FromConfigRegionsAdapter.js.map +1 -1
- package/esm/FromConfigAdapter/configSchema.d.ts +0 -2
- package/esm/FromConfigAdapter/configSchema.js +10 -20
- package/esm/FromConfigAdapter/configSchema.js.map +1 -1
- package/esm/FromConfigAdapter/fromConfig.d.ts +2 -0
- package/esm/FromConfigAdapter/fromConfig.js +23 -0
- package/esm/FromConfigAdapter/fromConfig.js.map +1 -0
- package/esm/FromConfigAdapter/fromConfigRegions.d.ts +2 -0
- package/esm/FromConfigAdapter/fromConfigRegions.js +27 -0
- package/esm/FromConfigAdapter/fromConfigRegions.js.map +1 -0
- package/esm/FromConfigAdapter/fromConfigSequence.d.ts +2 -0
- package/esm/FromConfigAdapter/fromConfigSequence.js +23 -0
- package/esm/FromConfigAdapter/fromConfigSequence.js.map +1 -0
- package/esm/FromConfigAdapter/index.d.ts +3 -1
- package/esm/FromConfigAdapter/index.js +3 -1
- package/esm/FromConfigAdapter/index.js.map +1 -1
- package/esm/RefNameAliasAdapter/configSchema.d.ts +2 -2
- package/esm/RefNameAliasAdapter/configSchema.js +12 -1
- package/esm/RefNameAliasAdapter/configSchema.js.map +1 -1
- package/package.json +2 -2
- package/src/ConfigurationEditorWidget/components/__snapshots__/ConfigurationEditor.test.tsx.snap +89 -89
- package/src/FromConfigAdapter/FromConfigAdapter.ts +4 -2
- package/src/FromConfigAdapter/FromConfigRegionsAdapter.test.ts +1 -1
- package/src/FromConfigAdapter/FromConfigRegionsAdapter.ts +5 -4
- package/src/FromConfigAdapter/FromConfigSequenceAdapter.test.ts +2 -1
- package/src/FromConfigAdapter/configSchema.ts +11 -30
- package/src/FromConfigAdapter/fromConfig.ts +29 -0
- package/src/FromConfigAdapter/fromConfigRegions.ts +31 -0
- package/src/FromConfigAdapter/fromConfigSequence.ts +28 -0
- package/src/FromConfigAdapter/index.ts +3 -5
- package/src/RefNameAliasAdapter/configSchema.ts +14 -1
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@@ -8,8 +8,8 @@ export declare const useSlotEditorStyles: (params: void, styleOverrides?: {
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} | undefined) => {
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classes: Record<"paper" | "paperContent" | "slotModeSwitch", string>;
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theme: import("@mui/material").Theme;
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css: import("tss-react
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cx: import("tss-react
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css: import("tss-react").Css;
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cx: import("tss-react").Cx;
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};
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declare const SlotEditor: ({ slot, slotSchema }: {
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slot: any;
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@@ -1,7 +1,7 @@
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import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
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import SimpleFeature, { Feature, SimpleFeatureSerialized } from '@jbrowse/core/util/simpleFeature';
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import { NoAssemblyRegion } from '@jbrowse/core/util/types';
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import { AnyConfigurationModel } from '@jbrowse/core/configuration
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import { AnyConfigurationModel } from '@jbrowse/core/configuration';
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import PluginManager from '@jbrowse/core/PluginManager';
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import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
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/**
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@@ -1 +1 @@
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{"version":3,"file":"FromConfigAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAAgF;AAChF,qFAGyC;AACzC,kDAA0D;
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{"version":3,"file":"FromConfigAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAAgF;AAChF,qFAGyC;AACzC,kDAA0D;AAE1D,+DAGoC;AAIpC;;;;GAIG;AAEH,MAAqB,iBAAkB,SAAQ,oCAAsB;IAGnE,YACE,IAA2B,EAC3B,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,IAAI,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QACzC,MAAM,KAAK,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,UAAU,CAA8B,CAAA;QAC3E,IAAI,CAAC,QAAQ,GAAG,iBAAiB,CAAC,YAAY,CAAC,KAAK,IAAI,EAAE,CAAC,CAAA;IAC7D,CAAC;IAED,MAAM,CAAC,YAAY,CAAC,KAAgC;QAClD,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAqB,CAAA;QAC7C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YACxC,IAAI,KAAK,CAAC,CAAC,CAAC,EAAE;gBACZ,MAAM,CAAC,GAAG,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;gBACpC,MAAM,OAAO,GAAG,CAAC,CAAC,GAAG,CAAC,SAAS,CAAW,CAAA;gBAC1C,IAAI,MAAM,GAAG,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;gBAClC,IAAI,CAAC,MAAM,EAAE;oBACX,MAAM,GAAG,EAAE,CAAA;oBACX,QAAQ,CAAC,GAAG,CAAC,OAAO,EAAE,MAAM,CAAC,CAAA;iBAC9B;gBAED,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;aACf;SACF;QAED,mEAAmE;QACnE,KAAK,MAAM,WAAW,IAAI,QAAQ,CAAC,MAAM,EAAE,EAAE;YAC3C,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAA;SAC5D;QAED,OAAO,QAAQ,CAAA;IACjB,CAAC;IAED,MAAM,CAAC,WAAW,CAAC,IAA6B;QAC9C,OAAO,IAAI,uBAAa,CAAC,IAAI,CAAC,CAAA;IAChC,CAAC;IAED,KAAK,CAAC,WAAW;QACf,OAAO,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAA;IAClC,CAAC;IAED,KAAK,CAAC,iBAAiB;QACrB,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,YAAY,CAAC,EAAE,CAAC,CAAC;YAC7D,OAAO,EAAE,YAAY,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC;YACvC,OAAO,EAAE,YAAY,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC;SACxC,CAAC,CAAC,CAAA;IACL,CAAC;IAED,WAAW,CAAC,MAAwB;QAClC,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;QAEtC,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,CAAA;YACjD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACxC,MAAM,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;gBAErB,IAAI,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,KAAK,IAAI,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,GAAG,EAAE;oBAChD,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;iBACjB;aACF;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;CACzC;AArED,oCAqEC"}
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@@ -1,6 +1,5 @@
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import { BaseAdapter, RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
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import {
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import { configSchema as FromConfigAdapterConfigSchema } from './configSchema';
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import { AnyConfigurationModel } from '@jbrowse/core/configuration';
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import PluginManager from '@jbrowse/core/PluginManager';
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import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
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/**
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@@ -10,7 +9,7 @@ import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache'
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*/
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export default class FromConfigRegionsAdapter extends BaseAdapter implements RegionsAdapter {
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private features;
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constructor(config:
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constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
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/**
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* Get refName, start, and end for all features after collapsing any overlaps
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*/
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@@ -1 +1 @@
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{"version":3,"file":"FromConfigRegionsAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigRegionsAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAKhD,+
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{"version":3,"file":"FromConfigRegionsAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigRegionsAdapter.ts"],"names":[],"mappings":";;;;;AAAA,yEAGgD;AAKhD,+DAGoC;AACpC,4EAAmD;AAInD;;;;GAIG;AACH,MAAqB,wBACnB,SAAQ,yBAAW;IAKnB,YACE,MAA6B,EAC7B,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,QAAQ,GAAG,IAAA,8BAAc,EAC7B,MAAM,EACN,UAAU,CACkB,CAAA;QAC9B,IAAI,CAAC,QAAQ,GAAG,2BAAiB,CAAC,YAAY,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAA;IAChE,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,UAAU;QACd,MAAM,OAAO,GAAG,EAAE,CAAA;QAElB,wEAAwE;QACxE,KAAK,MAAM,CAAC,OAAO,EAAE,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,EAAE;YAC/C,IAAI,aAAa,CAAA;YACjB,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE;gBAC9B,IACE,aAAa;oBACb,aAAa,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;oBACzC,aAAa,CAAC,KAAK,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EACzC;oBACA,aAAa,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;iBACvC;qBAAM;oBACL,IAAI,aAAa,EAAE;wBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;qBAC5B;oBACD,aAAa,GAAG;wBACd,OAAO;wBACP,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;qBACxB,CAAA;iBACF;aACF;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;aAC5B;SACF;QAED,8BAA8B;QAC9B,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAA;QAE1D,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;CACzC;AA1DD,2CA0DC"}
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export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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export declare const regionsConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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export declare const sequenceConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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exports.
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exports.configSchema = void 0;
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const configuration_1 = require("@jbrowse/core/configuration");
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/**
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* #config FromConfigAdapter
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*/
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function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
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exports.configSchema = (0, configuration_1.ConfigurationSchema)('FromConfigAdapter', {
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/configSchema.ts"],"names":[],"mappings":";;;AAAA,+DAAiE;
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/configSchema.ts"],"names":[],"mappings":";;;AAAA,+DAAiE;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAE3D,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAC7C,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,eAAe;KAC9B;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA"}
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{"version":3,"file":"fromConfig.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfig.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,eAAe;KAC9B;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}
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const regionsConfigSchema = (0, configuration_1.ConfigurationSchema)('FromConfigRegionsAdapter', {
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},
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}, {
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explicitlyTyped: true,
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implicitIdentifier: 'adapterId',
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});
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exports.default = regionsConfigSchema;
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//# sourceMappingURL=fromConfigRegions.js.map
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@@ -0,0 +1 @@
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+
{"version":3,"file":"fromConfigRegions.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigRegions.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,IAAA,mCAAmB,EAC7C,0BAA0B,EAC1B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,eAAe;KAC9B;CACF,EACD;IACE,eAAe,EAAE,IAAI;IACrB,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AACD,kBAAe,mBAAmB,CAAA"}
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@@ -0,0 +1,25 @@
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1
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+
"use strict";
|
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Object.defineProperty(exports, "__esModule", { value: true });
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const configuration_1 = require("@jbrowse/core/configuration");
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/**
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* #config FromConfigSequenceAdapter
|
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*/
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function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
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|
+
const sequenceConfigSchema = (0, configuration_1.ConfigurationSchema)('FromConfigSequenceAdapter', {
|
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/**
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* #slot
|
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*/
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features: {
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type: 'frozen',
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defaultValue: [],
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},
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/**
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* #slot
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*/
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featureClass: {
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type: 'string',
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defaultValue: 'SimpleFeature',
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},
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}, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
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exports.default = sequenceConfigSchema;
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//# sourceMappingURL=fromConfigSequence.js.map
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@@ -0,0 +1 @@
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1
|
+
{"version":3,"file":"fromConfigSequence.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigSequence.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,oBAAoB,GAAG,IAAA,mCAAmB,EAC9C,2BAA2B,EAC3B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,eAAe;KAC9B;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,kBAAe,oBAAoB,CAAA"}
|
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@@ -1,4 +1,6 @@
|
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1
1
|
export { default as AdapterClass } from './FromConfigAdapter';
|
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2
2
|
export { default as RegionsAdapterClass } from './FromConfigRegionsAdapter';
|
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3
3
|
export { default as SequenceAdapterClass } from './FromConfigSequenceAdapter';
|
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4
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-
export {
|
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4
|
+
export { default as configSchema } from './fromConfig';
|
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5
|
+
export { default as regionsConfigSchema } from './fromConfig';
|
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6
|
+
export { default as sequenceConfigSchema } from './fromConfigSequence';
|
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@@ -10,8 +10,10 @@ var FromConfigRegionsAdapter_1 = require("./FromConfigRegionsAdapter");
|
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10
10
|
Object.defineProperty(exports, "RegionsAdapterClass", { enumerable: true, get: function () { return __importDefault(FromConfigRegionsAdapter_1).default; } });
|
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11
11
|
var FromConfigSequenceAdapter_1 = require("./FromConfigSequenceAdapter");
|
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12
|
Object.defineProperty(exports, "SequenceAdapterClass", { enumerable: true, get: function () { return __importDefault(FromConfigSequenceAdapter_1).default; } });
|
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-
var
|
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14
|
-
Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return
|
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15
|
-
|
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16
|
-
Object.defineProperty(exports, "
|
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13
|
+
var fromConfig_1 = require("./fromConfig");
|
|
14
|
+
Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(fromConfig_1).default; } });
|
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15
|
+
var fromConfig_2 = require("./fromConfig");
|
|
16
|
+
Object.defineProperty(exports, "regionsConfigSchema", { enumerable: true, get: function () { return __importDefault(fromConfig_2).default; } });
|
|
17
|
+
var fromConfigSequence_1 = require("./fromConfigSequence");
|
|
18
|
+
Object.defineProperty(exports, "sequenceConfigSchema", { enumerable: true, get: function () { return __importDefault(fromConfigSequence_1).default; } });
|
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17
19
|
//# sourceMappingURL=index.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/index.ts"],"names":[],"mappings":";;;;;;AAAA,yDAA6D;AAApD,kIAAA,OAAO,OAAgB;AAChC,uEAA2E;AAAlE,gJAAA,OAAO,OAAuB;AACvC,yEAA6E;AAApE,kJAAA,OAAO,OAAwB;AACxC
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/index.ts"],"names":[],"mappings":";;;;;;AAAA,yDAA6D;AAApD,kIAAA,OAAO,OAAgB;AAChC,uEAA2E;AAAlE,gJAAA,OAAO,OAAuB;AACvC,yEAA6E;AAApE,kJAAA,OAAO,OAAwB;AACxC,2CAAsD;AAA7C,2HAAA,OAAO,OAAgB;AAChC,2CAA6D;AAApD,kIAAA,OAAO,OAAuB;AACvC,2DAAsE;AAA7D,2IAAA,OAAO,OAAwB"}
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
declare const
|
|
2
|
-
export default
|
|
1
|
+
declare const RefNameAliasAdapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
2
|
+
export default RefNameAliasAdapter;
|
|
@@ -1,7 +1,14 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
const configuration_1 = require("@jbrowse/core/configuration");
|
|
4
|
-
|
|
4
|
+
/**
|
|
5
|
+
* #config RefNameAliasAdapter
|
|
6
|
+
*/
|
|
7
|
+
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
|
8
|
+
const RefNameAliasAdapter = (0, configuration_1.ConfigurationSchema)('RefNameAliasAdapter', {
|
|
9
|
+
/**
|
|
10
|
+
* #slot
|
|
11
|
+
*/
|
|
5
12
|
location: {
|
|
6
13
|
type: 'fileLocation',
|
|
7
14
|
defaultValue: {
|
|
@@ -9,9 +16,13 @@ exports.default = (0, configuration_1.ConfigurationSchema)('RefNameAliasAdapter'
|
|
|
9
16
|
locationType: 'UriLocation',
|
|
10
17
|
},
|
|
11
18
|
},
|
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19
|
+
/**
|
|
20
|
+
* #slot
|
|
21
|
+
*/
|
|
12
22
|
refNameColumn: {
|
|
13
23
|
type: 'number',
|
|
14
24
|
defaultValue: 0,
|
|
15
25
|
},
|
|
16
26
|
}, { explicitlyTyped: true });
|
|
27
|
+
exports.default = RefNameAliasAdapter;
|
|
17
28
|
//# sourceMappingURL=configSchema.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE,
|
|
1
|
+
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,IAAA,mCAAmB,EAC7C,qBAAqB,EACrB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,yBAAyB;YAC9B,YAAY,EAAE,aAAa;SAC5B;KACF;IACD;;OAEG;IACH,aAAa,EAAE;QACb,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AAED,kBAAe,mBAAmB,CAAA"}
|
|
@@ -8,8 +8,8 @@ export declare const useSlotEditorStyles: (params: void, styleOverrides?: {
|
|
|
8
8
|
} | undefined) => {
|
|
9
9
|
classes: Record<"paper" | "paperContent" | "slotModeSwitch", string>;
|
|
10
10
|
theme: import("@mui/material").Theme;
|
|
11
|
-
css: import("tss-react
|
|
12
|
-
cx: import("tss-react
|
|
11
|
+
css: import("tss-react").Css;
|
|
12
|
+
cx: import("tss-react").Cx;
|
|
13
13
|
};
|
|
14
14
|
declare const SlotEditor: ({ slot, slotSchema }: {
|
|
15
15
|
slot: any;
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
|
|
2
2
|
import SimpleFeature, { Feature, SimpleFeatureSerialized } from '@jbrowse/core/util/simpleFeature';
|
|
3
3
|
import { NoAssemblyRegion } from '@jbrowse/core/util/types';
|
|
4
|
-
import { AnyConfigurationModel } from '@jbrowse/core/configuration
|
|
4
|
+
import { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
5
5
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
6
6
|
import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
|
|
7
7
|
/**
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
|
|
2
2
|
import SimpleFeature from '@jbrowse/core/util/simpleFeature';
|
|
3
3
|
import { ObservableCreate } from '@jbrowse/core/util/rxjs';
|
|
4
|
-
import { readConfObject } from '@jbrowse/core/configuration';
|
|
4
|
+
import { readConfObject, } from '@jbrowse/core/configuration';
|
|
5
5
|
/**
|
|
6
6
|
* Adapter that just returns the features defined in its `features` configuration
|
|
7
7
|
* key, like:
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"FromConfigAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAChF,OAAO,aAGN,MAAM,kCAAkC,CAAA;AACzC,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;
|
|
1
|
+
{"version":3,"file":"FromConfigAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAChF,OAAO,aAGN,MAAM,kCAAkC,CAAA;AACzC,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAE1D,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAIpC;;;;GAIG;AAEH,MAAM,CAAC,OAAO,OAAO,iBAAkB,SAAQ,sBAAsB;IAGnE,YACE,IAA2B,EAC3B,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,IAAI,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QACzC,MAAM,KAAK,GAAG,cAAc,CAAC,IAAI,EAAE,UAAU,CAA8B,CAAA;QAC3E,IAAI,CAAC,QAAQ,GAAG,iBAAiB,CAAC,YAAY,CAAC,KAAK,IAAI,EAAE,CAAC,CAAA;IAC7D,CAAC;IAED,MAAM,CAAC,YAAY,CAAC,KAAgC;QAClD,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAqB,CAAA;QAC7C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YACxC,IAAI,KAAK,CAAC,CAAC,CAAC,EAAE;gBACZ,MAAM,CAAC,GAAG,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;gBACpC,MAAM,OAAO,GAAG,CAAC,CAAC,GAAG,CAAC,SAAS,CAAW,CAAA;gBAC1C,IAAI,MAAM,GAAG,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;gBAClC,IAAI,CAAC,MAAM,EAAE;oBACX,MAAM,GAAG,EAAE,CAAA;oBACX,QAAQ,CAAC,GAAG,CAAC,OAAO,EAAE,MAAM,CAAC,CAAA;iBAC9B;gBAED,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;aACf;SACF;QAED,mEAAmE;QACnE,KAAK,MAAM,WAAW,IAAI,QAAQ,CAAC,MAAM,EAAE,EAAE;YAC3C,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAA;SAC5D;QAED,OAAO,QAAQ,CAAA;IACjB,CAAC;IAED,MAAM,CAAC,WAAW,CAAC,IAA6B;QAC9C,OAAO,IAAI,aAAa,CAAC,IAAI,CAAC,CAAA;IAChC,CAAC;IAED,KAAK,CAAC,WAAW;QACf,OAAO,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAA;IAClC,CAAC;IAED,KAAK,CAAC,iBAAiB;QACrB,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,YAAY,CAAC,EAAE,CAAC,CAAC;YAC7D,OAAO,EAAE,YAAY,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC;YACvC,OAAO,EAAE,YAAY,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC;SACxC,CAAC,CAAC,CAAA;IACL,CAAC;IAED,WAAW,CAAC,MAAwB;QAClC,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;QAEtC,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,CAAA;YACjD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACxC,MAAM,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;gBAErB,IAAI,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,KAAK,IAAI,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,GAAG,EAAE;oBAChD,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;iBACjB;aACF;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;CACzC"}
|
|
@@ -1,6 +1,5 @@
|
|
|
1
1
|
import { BaseAdapter, RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
|
|
2
|
-
import {
|
|
3
|
-
import { configSchema as FromConfigAdapterConfigSchema } from './configSchema';
|
|
2
|
+
import { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
4
3
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
5
4
|
import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
|
|
6
5
|
/**
|
|
@@ -10,7 +9,7 @@ import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache'
|
|
|
10
9
|
*/
|
|
11
10
|
export default class FromConfigRegionsAdapter extends BaseAdapter implements RegionsAdapter {
|
|
12
11
|
private features;
|
|
13
|
-
constructor(config:
|
|
12
|
+
constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
|
|
14
13
|
/**
|
|
15
14
|
* Get refName, start, and end for all features after collapsing any overlaps
|
|
16
15
|
*/
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import { BaseAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
|
|
2
|
-
import { readConfObject } from '@jbrowse/core/configuration';
|
|
2
|
+
import { readConfObject, } from '@jbrowse/core/configuration';
|
|
3
3
|
import FromConfigAdapter from './FromConfigAdapter';
|
|
4
4
|
/**
|
|
5
5
|
* Adapter that just returns the features defined in its `features` configuration
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"FromConfigRegionsAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigRegionsAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,WAAW,GAEZ,MAAM,yCAAyC,CAAA;AAKhD,OAAO,
|
|
1
|
+
{"version":3,"file":"FromConfigRegionsAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigRegionsAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,WAAW,GAEZ,MAAM,yCAAyC,CAAA;AAKhD,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AACpC,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AAInD;;;;GAIG;AACH,MAAM,CAAC,OAAO,OAAO,wBACnB,SAAQ,WAAW;IAKnB,YACE,MAA6B,EAC7B,aAAiC,EACjC,aAA6B;QAE7B,KAAK,CAAC,MAAM,EAAE,aAAa,EAAE,aAAa,CAAC,CAAA;QAC3C,MAAM,QAAQ,GAAG,cAAc,CAC7B,MAAM,EACN,UAAU,CACkB,CAAA;QAC9B,IAAI,CAAC,QAAQ,GAAG,iBAAiB,CAAC,YAAY,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAA;IAChE,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,UAAU;QACd,MAAM,OAAO,GAAG,EAAE,CAAA;QAElB,wEAAwE;QACxE,KAAK,MAAM,CAAC,OAAO,EAAE,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,EAAE;YAC/C,IAAI,aAAa,CAAA;YACjB,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE;gBAC9B,IACE,aAAa;oBACb,aAAa,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;oBACzC,aAAa,CAAC,KAAK,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EACzC;oBACA,aAAa,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;iBACvC;qBAAM;oBACL,IAAI,aAAa,EAAE;wBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;qBAC5B;oBACD,aAAa,GAAG;wBACd,OAAO;wBACP,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;qBACxB,CAAA;iBACF;aACF;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;aAC5B;SACF;QAED,8BAA8B;QAC9B,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAA;QAE1D,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;CACzC"}
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@@ -1,3 +1 @@
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1
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export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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export declare const regionsConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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export declare const sequenceConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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@@ -1,29 +1,19 @@
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import { ConfigurationSchema } from '@jbrowse/core/configuration';
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/**
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* #config FromConfigAdapter
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*/
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function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
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export const configSchema = ConfigurationSchema('FromConfigAdapter', {
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/**
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* #slot
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*/
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features: {
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type: 'frozen',
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defaultValue: [],
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},
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}, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
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export const regionsConfigSchema = ConfigurationSchema('FromConfigRegionsAdapter', {
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features: {
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type: 'frozen',
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defaultValue: [],
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},
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featureClass: {
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type: 'string',
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defaultValue: 'SimpleFeature',
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},
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}, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
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export const sequenceConfigSchema = ConfigurationSchema('FromConfigSequenceAdapter', {
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features: {
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type: 'frozen',
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defaultValue: [],
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},
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/**
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*/
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featureClass: {
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type: 'string',
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defaultValue: 'SimpleFeature',
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@@ -1 +1 @@
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-
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,
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1
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+
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,CAAC,MAAM,YAAY,GAAG,mBAAmB,CAC7C,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,eAAe;KAC9B;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA"}
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@@ -0,0 +1,23 @@
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1
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+
import { ConfigurationSchema } from '@jbrowse/core/configuration';
|
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2
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/**
|
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3
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+
* #config FromConfigAdapter
|
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4
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+
*/
|
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5
|
+
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
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6
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+
const configSchema = ConfigurationSchema('FromConfigAdapter', {
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/**
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* #slot
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*/
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features: {
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type: 'frozen',
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defaultValue: [],
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},
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/**
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* #slot
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*/
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featureClass: {
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type: 'string',
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defaultValue: 'SimpleFeature',
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},
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}, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
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export default configSchema;
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//# sourceMappingURL=fromConfig.js.map
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@@ -0,0 +1 @@
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1
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{"version":3,"file":"fromConfig.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfig.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,YAAY,GAAG,mBAAmB,CACtC,mBAAmB,EACnB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,eAAe;KAC9B;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,eAAe,YAAY,CAAA"}
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@@ -0,0 +1,27 @@
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1
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+
import { ConfigurationSchema } from '@jbrowse/core/configuration';
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2
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/**
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3
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* #config FromConfigRegionsAdapter
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4
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* used for specifying refNames+sizes of an assembly
|
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+
*/
|
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|
+
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
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7
|
+
const regionsConfigSchema = ConfigurationSchema('FromConfigRegionsAdapter', {
|
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8
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/**
|
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9
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* #slot
|
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*/
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features: {
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type: 'frozen',
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defaultValue: [],
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},
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/**
|
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* #slot
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*/
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featureClass: {
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type: 'string',
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defaultValue: 'SimpleFeature',
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},
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+
}, {
|
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+
explicitlyTyped: true,
|
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24
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+
implicitIdentifier: 'adapterId',
|
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+
});
|
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|
+
export default regionsConfigSchema;
|
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//# sourceMappingURL=fromConfigRegions.js.map
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"fromConfigRegions.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigRegions.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,mBAAmB,CAC7C,0BAA0B,EAC1B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,eAAe;KAC9B;CACF,EACD;IACE,eAAe,EAAE,IAAI;IACrB,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AACD,eAAe,mBAAmB,CAAA"}
|
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
import { ConfigurationSchema } from '@jbrowse/core/configuration';
|
|
2
|
+
/**
|
|
3
|
+
* #config FromConfigSequenceAdapter
|
|
4
|
+
*/
|
|
5
|
+
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
|
6
|
+
const sequenceConfigSchema = ConfigurationSchema('FromConfigSequenceAdapter', {
|
|
7
|
+
/**
|
|
8
|
+
* #slot
|
|
9
|
+
*/
|
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10
|
+
features: {
|
|
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|
+
type: 'frozen',
|
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|
+
defaultValue: [],
|
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13
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+
},
|
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14
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+
/**
|
|
15
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+
* #slot
|
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16
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+
*/
|
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featureClass: {
|
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type: 'string',
|
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+
defaultValue: 'SimpleFeature',
|
|
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|
+
},
|
|
21
|
+
}, { explicitlyTyped: true, implicitIdentifier: 'adapterId' });
|
|
22
|
+
export default sequenceConfigSchema;
|
|
23
|
+
//# sourceMappingURL=fromConfigSequence.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"fromConfigSequence.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/fromConfigSequence.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,oBAAoB,GAAG,mBAAmB,CAC9C,2BAA2B,EAC3B;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,YAAY,EAAE;QACZ,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,eAAe;KAC9B;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,CAC3D,CAAA;AAED,eAAe,oBAAoB,CAAA"}
|
|
@@ -1,4 +1,6 @@
|
|
|
1
1
|
export { default as AdapterClass } from './FromConfigAdapter';
|
|
2
2
|
export { default as RegionsAdapterClass } from './FromConfigRegionsAdapter';
|
|
3
3
|
export { default as SequenceAdapterClass } from './FromConfigSequenceAdapter';
|
|
4
|
-
export {
|
|
4
|
+
export { default as configSchema } from './fromConfig';
|
|
5
|
+
export { default as regionsConfigSchema } from './fromConfig';
|
|
6
|
+
export { default as sequenceConfigSchema } from './fromConfigSequence';
|
|
@@ -1,5 +1,7 @@
|
|
|
1
1
|
export { default as AdapterClass } from './FromConfigAdapter';
|
|
2
2
|
export { default as RegionsAdapterClass } from './FromConfigRegionsAdapter';
|
|
3
3
|
export { default as SequenceAdapterClass } from './FromConfigSequenceAdapter';
|
|
4
|
-
export {
|
|
4
|
+
export { default as configSchema } from './fromConfig';
|
|
5
|
+
export { default as regionsConfigSchema } from './fromConfig';
|
|
6
|
+
export { default as sequenceConfigSchema } from './fromConfigSequence';
|
|
5
7
|
//# sourceMappingURL=index.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,qBAAqB,CAAA;AAC7D,OAAO,EAAE,OAAO,IAAI,mBAAmB,EAAE,MAAM,4BAA4B,CAAA;AAC3E,OAAO,EAAE,OAAO,IAAI,oBAAoB,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,qBAAqB,CAAA;AAC7D,OAAO,EAAE,OAAO,IAAI,mBAAmB,EAAE,MAAM,4BAA4B,CAAA;AAC3E,OAAO,EAAE,OAAO,IAAI,oBAAoB,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,cAAc,CAAA;AACtD,OAAO,EAAE,OAAO,IAAI,mBAAmB,EAAE,MAAM,cAAc,CAAA;AAC7D,OAAO,EAAE,OAAO,IAAI,oBAAoB,EAAE,MAAM,sBAAsB,CAAA"}
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
declare const
|
|
2
|
-
export default
|
|
1
|
+
declare const RefNameAliasAdapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
2
|
+
export default RefNameAliasAdapter;
|
|
@@ -1,5 +1,12 @@
|
|
|
1
1
|
import { ConfigurationSchema } from '@jbrowse/core/configuration';
|
|
2
|
-
|
|
2
|
+
/**
|
|
3
|
+
* #config RefNameAliasAdapter
|
|
4
|
+
*/
|
|
5
|
+
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
|
6
|
+
const RefNameAliasAdapter = ConfigurationSchema('RefNameAliasAdapter', {
|
|
7
|
+
/**
|
|
8
|
+
* #slot
|
|
9
|
+
*/
|
|
3
10
|
location: {
|
|
4
11
|
type: 'fileLocation',
|
|
5
12
|
defaultValue: {
|
|
@@ -7,9 +14,13 @@ export default ConfigurationSchema('RefNameAliasAdapter', {
|
|
|
7
14
|
locationType: 'UriLocation',
|
|
8
15
|
},
|
|
9
16
|
},
|
|
17
|
+
/**
|
|
18
|
+
* #slot
|
|
19
|
+
*/
|
|
10
20
|
refNameColumn: {
|
|
11
21
|
type: 'number',
|
|
12
22
|
defaultValue: 0,
|
|
13
23
|
},
|
|
14
24
|
}, { explicitlyTyped: true });
|
|
25
|
+
export default RefNameAliasAdapter;
|
|
15
26
|
//# sourceMappingURL=configSchema.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,
|
|
1
|
+
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/RefNameAliasAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,mBAAmB,GAAG,mBAAmB,CAC7C,qBAAqB,EACrB;IACE;;OAEG;IACH,QAAQ,EAAE;QACR,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,yBAAyB;YAC9B,YAAY,EAAE,aAAa;SAC5B;KACF;IACD;;OAEG;IACH,aAAa,EAAE;QACb,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AAED,eAAe,mBAAmB,CAAA"}
|