@jbrowse/plugin-config 2.0.0 → 2.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1,7 +1,8 @@
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  import { Feature } from '@jbrowse/core/util/simpleFeature';
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  import { NoAssemblyRegion } from '@jbrowse/core/util/types';
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  import FromConfigAdapter from './FromConfigAdapter';
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- export default class FromConfigSequenceAdapter extends FromConfigAdapter {
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+ import { RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
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+ export default class FromConfigSequenceAdapter extends FromConfigAdapter implements RegionsAdapter {
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  /**
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  * Fetch features for a certain region
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  * @param region - Region
@@ -1 +1 @@
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- {"version":3,"file":"FromConfigSequenceAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigSequenceAdapter.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,mFAAyE;AACzE,gDAA0D;AAE1D,4CAAwC;AACxC,0EAAmD;AAEnD;IAAuD,6CAAiB;IAAxE;;IA8EA,CAAC;IA7EC;;;;OAIG;IACH,+CAAW,GAAX,UAAY,MAAwB;QAApC,iBA6BC;QA5BC,qEAAqE;QACrE,+EAA+E;QAC/E,uDAAuD;QACvD,8EAA8E;QAC9E,IAAM,gBAAgB,GAAG,iBAAM,WAAW,CAAA;QAC1C,OAAO,IAAA,uBAAgB,EAAU,UAAM,QAAQ;;;;4BAC/B,qBAAM,gBAAgB;6BACjC,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC;6BAClB,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC;6BACf,SAAS,EAAE,EAAA;;wBAHR,KAAK,GAAG,SAGA;wBACR,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;wBACrB,QAAQ,CAAC,IAAI,CACX,IAAI,uBAAa,uBACZ,IAAI,CAAC,MAAM,EAAE,KAChB,QAAQ,EAAE,UAAG,IAAI,CAAC,EAAE,EAAE,cAAI,MAAM,CAAC,KAAK,cAAI,MAAM,CAAC,GAAG,CAAE,EACtD,GAAG,EAAE,MAAM,CAAC,GAAG,EACf,KAAK,EAAE,MAAM,CAAC,KAAK,EACnB,GAAG,EAAE,IAAI;iCACN,GAAG,CAAC,KAAK,CAAC;iCACV,KAAK,CACJ,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,EAC7C,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,CAC5C,IACH,CACH,CAAA;wBAED,QAAQ,CAAC,QAAQ,EAAE,CAAA;;;;aACpB,CAAC,CAAA;IACJ,CAAC;IAED;;OAEG;IACG,8CAAU,GAAhB;;;;;gBACQ,OAAO,GAAG,EAAE,CAAA;;oBAElB,wEAAwE;oBACxE,KAAkC,KAAA,SAAA,IAAI,CAAC,QAAQ,CAAA,4CAAE;wBAAtC,KAAA,mBAAmB,EAAlB,OAAO,QAAA,EAAE,QAAQ,QAAA;wBACvB,aAAa,SAAA,CAAA;;4BACjB,KAAsB,4BAAA,SAAA,QAAQ,CAAA,CAAA,0FAAE;gCAArB,OAAO;gCAChB,IACE,aAAa;oCACb,aAAa,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;oCACzC,aAAa,CAAC,KAAK,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EACzC;oCACA,aAAa,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;iCACvC;qCAAM;oCACL,IAAI,aAAa,EAAE;wCACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;qCAC5B;oCACD,aAAa,GAAG;wCACd,OAAO,SAAA;wCACP,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wCAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;qCACxB,CAAA;iCACF;6BACF;;;;;;;;;wBACD,IAAI,aAAa,EAAE;4BACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;yBAC5B;qBACF;;;;;;;;;gBAED,sBAAO,OAAO,EAAA;;;KACf;IAED;;;;OAIG;IACH,iDAAa,GAAb,WAAc,gBAAgB,IAAS,CAAC;IAC1C,gCAAC;AAAD,CAAC,AA9ED,CAAuD,2BAAiB,GA8EvE"}
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+ {"version":3,"file":"FromConfigSequenceAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigSequenceAdapter.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,mFAAyE;AACzE,gDAA0D;AAE1D,4CAAwC;AACxC,0EAAmD;AAGnD;IACU,6CAAiB;IAD3B;;IAiFA,CAAC;IA7EC;;;;OAIG;IACH,+CAAW,GAAX,UAAY,MAAwB;QAApC,iBA6BC;QA5BC,qEAAqE;QACrE,+EAA+E;QAC/E,uDAAuD;QACvD,8EAA8E;QAC9E,IAAM,gBAAgB,GAAG,iBAAM,WAAW,CAAA;QAC1C,OAAO,IAAA,uBAAgB,EAAU,UAAM,QAAQ;;;;4BAC/B,qBAAM,gBAAgB;6BACjC,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC;6BAClB,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC;6BACf,SAAS,EAAE,EAAA;;wBAHR,KAAK,GAAG,SAGA;wBACR,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;wBACrB,QAAQ,CAAC,IAAI,CACX,IAAI,uBAAa,uBACZ,IAAI,CAAC,MAAM,EAAE,KAChB,QAAQ,EAAE,UAAG,IAAI,CAAC,EAAE,EAAE,cAAI,MAAM,CAAC,KAAK,cAAI,MAAM,CAAC,GAAG,CAAE,EACtD,GAAG,EAAE,MAAM,CAAC,GAAG,EACf,KAAK,EAAE,MAAM,CAAC,KAAK,EACnB,GAAG,EAAE,IAAI;iCACN,GAAG,CAAC,KAAK,CAAC;iCACV,KAAK,CACJ,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,EAC7C,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,CAC5C,IACH,CACH,CAAA;wBAED,QAAQ,CAAC,QAAQ,EAAE,CAAA;;;;aACpB,CAAC,CAAA;IACJ,CAAC;IAED;;OAEG;IACG,8CAAU,GAAhB;;;;;gBACQ,OAAO,GAAG,EAAE,CAAA;;oBAElB,wEAAwE;oBACxE,KAAkC,KAAA,SAAA,IAAI,CAAC,QAAQ,CAAA,4CAAE;wBAAtC,KAAA,mBAAmB,EAAlB,OAAO,QAAA,EAAE,QAAQ,QAAA;wBACvB,aAAa,SAAA,CAAA;;4BACjB,KAAsB,4BAAA,SAAA,QAAQ,CAAA,CAAA,0FAAE;gCAArB,OAAO;gCAChB,IACE,aAAa;oCACb,aAAa,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;oCACzC,aAAa,CAAC,KAAK,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EACzC;oCACA,aAAa,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;iCACvC;qCAAM;oCACL,IAAI,aAAa,EAAE;wCACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;qCAC5B;oCACD,aAAa,GAAG;wCACd,OAAO,SAAA;wCACP,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wCAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;qCACxB,CAAA;iCACF;6BACF;;;;;;;;;wBACD,IAAI,aAAa,EAAE;4BACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;yBAC5B;qBACF;;;;;;;;;gBAED,sBAAO,OAAO,EAAA;;;KACf;IAED;;;;OAIG;IACH,iDAAa,GAAb,WAAc,gBAAgB,IAAS,CAAC;IAC1C,gCAAC;AAAD,CAAC,AAjFD,CACU,2BAAiB,GAgF1B"}
@@ -1,7 +1,8 @@
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  import { Feature } from '@jbrowse/core/util/simpleFeature';
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  import { NoAssemblyRegion } from '@jbrowse/core/util/types';
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  import FromConfigAdapter from './FromConfigAdapter';
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- export default class FromConfigSequenceAdapter extends FromConfigAdapter {
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+ import { RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
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+ export default class FromConfigSequenceAdapter extends FromConfigAdapter implements RegionsAdapter {
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  /**
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  * Fetch features for a certain region
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  * @param region - Region
@@ -1 +1 @@
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- {"version":3,"file":"FromConfigSequenceAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigSequenceAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,aAA0B,MAAM,kCAAkC,CAAA;AACzE,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAE1D,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AACxC,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AAEnD,MAAM,CAAC,OAAO,OAAO,yBAA0B,SAAQ,iBAAiB;IACtE;;;;OAIG;IACH,WAAW,CAAC,MAAwB;QAClC,qEAAqE;QACrE,+EAA+E;QAC/E,uDAAuD;QACvD,8EAA8E;QAC9E,MAAM,gBAAgB,GAAG,KAAK,CAAC,WAAW,CAAA;QAC1C,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,KAAK,GAAG,MAAM,gBAAgB;iBACjC,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC;iBAClB,IAAI,CAAC,OAAO,EAAE,CAAC;iBACf,SAAS,EAAE,CAAA;YACd,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;YACrB,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;gBAChB,GAAG,IAAI,CAAC,MAAM,EAAE;gBAChB,QAAQ,EAAE,GAAG,IAAI,CAAC,EAAE,EAAE,IAAI,MAAM,CAAC,KAAK,IAAI,MAAM,CAAC,GAAG,EAAE;gBACtD,GAAG,EAAE,MAAM,CAAC,GAAG;gBACf,KAAK,EAAE,MAAM,CAAC,KAAK;gBACnB,GAAG,EAAE,IAAI;qBACN,GAAG,CAAC,KAAK,CAAC;qBACV,KAAK,CACJ,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,EAC7C,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,CAC5C;aACJ,CAAC,CACH,CAAA;YAED,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,UAAU;QACd,MAAM,OAAO,GAAG,EAAE,CAAA;QAElB,wEAAwE;QACxE,KAAK,MAAM,CAAC,OAAO,EAAE,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,EAAE;YAC/C,IAAI,aAAa,CAAA;YACjB,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE;gBAC9B,IACE,aAAa;oBACb,aAAa,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;oBACzC,aAAa,CAAC,KAAK,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EACzC;oBACA,aAAa,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;iBACvC;qBAAM;oBACL,IAAI,aAAa,EAAE;wBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;qBAC5B;oBACD,aAAa,GAAG;wBACd,OAAO;wBACP,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;qBACxB,CAAA;iBACF;aACF;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;aAC5B;SACF;QAED,OAAO,OAAO,CAAA;IAChB,CAAC;IAED;;;;OAIG;IACH,aAAa,EAAC,gBAAgB,IAAS,CAAC;CACzC"}
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+ {"version":3,"file":"FromConfigSequenceAdapter.js","sourceRoot":"","sources":["../../src/FromConfigAdapter/FromConfigSequenceAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,aAA0B,MAAM,kCAAkC,CAAA;AACzE,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAE1D,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AACxC,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AAGnD,MAAM,CAAC,OAAO,OAAO,yBACnB,SAAQ,iBAAiB;IAGzB;;;;OAIG;IACH,WAAW,CAAC,MAAwB;QAClC,qEAAqE;QACrE,+EAA+E;QAC/E,uDAAuD;QACvD,8EAA8E;QAC9E,MAAM,gBAAgB,GAAG,KAAK,CAAC,WAAW,CAAA;QAC1C,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,KAAK,GAAG,MAAM,gBAAgB;iBACjC,IAAI,CAAC,IAAI,EAAE,MAAM,CAAC;iBAClB,IAAI,CAAC,OAAO,EAAE,CAAC;iBACf,SAAS,EAAE,CAAA;YACd,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;YACrB,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;gBAChB,GAAG,IAAI,CAAC,MAAM,EAAE;gBAChB,QAAQ,EAAE,GAAG,IAAI,CAAC,EAAE,EAAE,IAAI,MAAM,CAAC,KAAK,IAAI,MAAM,CAAC,GAAG,EAAE;gBACtD,GAAG,EAAE,MAAM,CAAC,GAAG;gBACf,KAAK,EAAE,MAAM,CAAC,KAAK;gBACnB,GAAG,EAAE,IAAI;qBACN,GAAG,CAAC,KAAK,CAAC;qBACV,KAAK,CACJ,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,EAC7C,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,CAC5C;aACJ,CAAC,CACH,CAAA;YAED,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,UAAU;QACd,MAAM,OAAO,GAAG,EAAE,CAAA;QAElB,wEAAwE;QACxE,KAAK,MAAM,CAAC,OAAO,EAAE,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,EAAE;YAC/C,IAAI,aAAa,CAAA;YACjB,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE;gBAC9B,IACE,aAAa;oBACb,aAAa,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;oBACzC,aAAa,CAAC,KAAK,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EACzC;oBACA,aAAa,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;iBACvC;qBAAM;oBACL,IAAI,aAAa,EAAE;wBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;qBAC5B;oBACD,aAAa,GAAG;wBACd,OAAO;wBACP,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;qBACxB,CAAA;iBACF;aACF;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;aAC5B;SACF;QAED,OAAO,OAAO,CAAA;IAChB,CAAC;IAED;;;;OAIG;IACH,aAAa,EAAC,gBAAgB,IAAS,CAAC;CACzC"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-config",
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- "version": "2.0.0",
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+ "version": "2.0.1",
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  "description": "JBrowse 2 config utilities",
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  "keywords": [
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  "jbrowse",
@@ -43,7 +43,7 @@
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  "react-color": "^2.19.3"
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  },
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  "peerDependencies": {
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- "@jbrowse/core": "^1.0.0",
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+ "@jbrowse/core": "^2.0.0",
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  "@mui/material": "^5.0.0",
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  "mobx": "^6.0.0",
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  "mobx-react": "^7.0.0",
@@ -60,5 +60,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "ecc7f5d47351a5ea04bc00f3a6eb6dfb607342e6"
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+ "gitHead": "ed935bf5612af3818abdc8ef52d100d5d81d33a2"
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  }
@@ -3,8 +3,12 @@ import { ObservableCreate } from '@jbrowse/core/util/rxjs'
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  import { NoAssemblyRegion } from '@jbrowse/core/util/types'
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  import { toArray } from 'rxjs/operators'
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  import FromConfigAdapter from './FromConfigAdapter'
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+ import { RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter'
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- export default class FromConfigSequenceAdapter extends FromConfigAdapter {
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+ export default class FromConfigSequenceAdapter
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+ extends FromConfigAdapter
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+ implements RegionsAdapter
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+ {
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  /**
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  * Fetch features for a certain region
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  * @param region - Region