@jbrowse/plugin-comparative-adapters 3.5.0 → 3.6.0

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Files changed (5) hide show
  1. package/dist/PairwiseIndexedPAFAdapter/PairwiseIndexedPAFAdapter.d.ts +1 -1
  2. package/dist/PairwiseIndexedPAFAdapter/PairwiseIndexedPAFAdapter.js +7 -7
  3. package/esm/PairwiseIndexedPAFAdapter/PairwiseIndexedPAFAdapter.d.ts +1 -1
  4. package/esm/PairwiseIndexedPAFAdapter/PairwiseIndexedPAFAdapter.js +7 -7
  5. package/package.json +5 -5
package/dist/PairwiseIndexedPAFAdapter/PairwiseIndexedPAFAdapter.d.ts CHANGED
@@ -13,7 +13,7 @@ export default class PAFAdapter extends BaseFeatureDataAdapter {
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  static capabilities: string[];
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  protected pif: TabixIndexedFile;
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  constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
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- getHeader(): Promise<string>;
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+ getHeader(opts?: BaseOptions): Promise<string>;
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  getAssemblyNames(): string[];
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  hasDataForRefName(): Promise<boolean>;
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  getRefNames(opts?: BaseOptions & {
package/dist/PairwiseIndexedPAFAdapter/PairwiseIndexedPAFAdapter.js CHANGED
@@ -24,18 +24,18 @@ class PAFAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
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  chunkCacheSize: 50 * 2 ** 20,
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  });
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  }
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- async getHeader() {
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- return this.pif.getHeader();
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+ async getHeader(opts) {
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+ const { statusCallback = () => { } } = opts || {};
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+ return (0, util_1.updateStatus)('Downloading header', statusCallback, () => this.pif.getHeader());
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  }
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  getAssemblyNames() {
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  const assemblyNames = this.getConf('assemblyNames');
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- if (assemblyNames.length === 0) {
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- return [
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+ return assemblyNames.length === 0
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+ ? [
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  this.getConf('queryAssembly'),
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  this.getConf('targetAssembly'),
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- ];
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- }
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- return assemblyNames;
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+ ]
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+ : assemblyNames;
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  }
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  async hasDataForRefName() {
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  return true;
package/esm/PairwiseIndexedPAFAdapter/PairwiseIndexedPAFAdapter.d.ts CHANGED
@@ -13,7 +13,7 @@ export default class PAFAdapter extends BaseFeatureDataAdapter {
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  static capabilities: string[];
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  protected pif: TabixIndexedFile;
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  constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
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- getHeader(): Promise<string>;
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+ getHeader(opts?: BaseOptions): Promise<string>;
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  getAssemblyNames(): string[];
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  hasDataForRefName(): Promise<boolean>;
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  getRefNames(opts?: BaseOptions & {
package/esm/PairwiseIndexedPAFAdapter/PairwiseIndexedPAFAdapter.js CHANGED
@@ -19,18 +19,18 @@ class PAFAdapter extends BaseFeatureDataAdapter {
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  chunkCacheSize: 50 * 2 ** 20,
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  });
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  }
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- async getHeader() {
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- return this.pif.getHeader();
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+ async getHeader(opts) {
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+ const { statusCallback = () => { } } = opts || {};
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+ return updateStatus('Downloading header', statusCallback, () => this.pif.getHeader());
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  }
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  getAssemblyNames() {
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  const assemblyNames = this.getConf('assemblyNames');
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- if (assemblyNames.length === 0) {
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- return [
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+ return assemblyNames.length === 0
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+ ? [
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  this.getConf('queryAssembly'),
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  this.getConf('targetAssembly'),
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- ];
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- }
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- return assemblyNames;
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+ ]
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+ : assemblyNames;
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  }
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  async hasDataForRefName() {
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  return true;
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-comparative-adapters",
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- "version": "3.5.0",
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+ "version": "3.6.0",
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  "description": "JBrowse 2 comparative adapters",
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  "keywords": [
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  "jbrowse",
@@ -38,9 +38,9 @@
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  "dependencies": {
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  "@gmod/bgzf-filehandle": "^4.0.0",
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  "@gmod/tabix": "^3.0.1",
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- "@jbrowse/core": "^3.5.0",
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- "@jbrowse/plugin-alignments": "^3.5.0",
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- "@jbrowse/plugin-linear-genome-view": "^3.5.0",
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+ "@jbrowse/core": "^3.6.0",
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+ "@jbrowse/plugin-alignments": "^3.6.0",
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+ "@jbrowse/plugin-linear-genome-view": "^3.6.0",
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  "@mui/material": "^7.0.0",
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  "generic-filehandle2": "^2.0.1",
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  "mobx": "^6.0.0",
@@ -58,5 +58,5 @@
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  "publishConfig": {
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  "access": "public"
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  },
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- "gitHead": "8a8aa0aab2229dece106a5715a767e649e2fe92b"
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+ "gitHead": "133a68815ab348d156c18d83cffc997356c3cfbb"
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  }