@jbrowse/plugin-comparative-adapters 2.6.1 → 2.6.3

package/dist/ChainAdapter/ChainAdapter.js

@@ -19,4 +19,3 @@ class ChainAdapter extends PAFAdapter_1.default {
     }
 }
 exports.default = ChainAdapter;
-//# sourceMappingURL=ChainAdapter.js.map

package/dist/ChainAdapter/configSchema.js

@@ -42,4 +42,3 @@ const ChainAdapter = (0, configuration_1.ConfigurationSchema)('ChainAdapter', {
     },
 }, { explicitlyTyped: true });
 exports.default = ChainAdapter;
-//# sourceMappingURL=configSchema.js.map

package/dist/ChainAdapter/index.js

@@ -39,4 +39,3 @@ exports.default = (pluginManager) => {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./ChainAdapter'))).then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/ChainAdapter/util.js

@@ -131,4 +131,3 @@ function paf_chain2paf(buffer) {
     return records;
 }
 exports.paf_chain2paf = paf_chain2paf;
-//# sourceMappingURL=util.js.map

package/dist/DeltaAdapter/DeltaAdapter.js

@@ -19,4 +19,3 @@ class DeltaAdapter extends PAFAdapter_1.default {
     }
 }
 exports.default = DeltaAdapter;
-//# sourceMappingURL=DeltaAdapter.js.map

package/dist/DeltaAdapter/configSchema.js

@@ -42,4 +42,3 @@ const DeltaAdapter = (0, configuration_1.ConfigurationSchema)('DeltaAdapter', {
     },
 }, { explicitlyTyped: true });
 exports.default = DeltaAdapter;
-//# sourceMappingURL=configSchema.js.map

package/dist/DeltaAdapter/index.js

@@ -39,4 +39,3 @@ exports.default = (pluginManager) => {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./DeltaAdapter'))).then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/DeltaAdapter/util.js

@@ -149,4 +149,3 @@ function paf_delta2paf(buffer) {
     return records;
 }
 exports.paf_delta2paf = paf_delta2paf;
-//# sourceMappingURL=util.js.map

package/dist/MCScanAnchorsAdapter/MCScanAnchorsAdapter.js

@@ -93,4 +93,3 @@ class MCScanAnchorsAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
 }
 MCScanAnchorsAdapter.capabilities = ['getFeatures', 'getRefNames'];
 exports.default = MCScanAnchorsAdapter;
-//# sourceMappingURL=MCScanAnchorsAdapter.js.map

package/dist/MCScanAnchorsAdapter/configSchema.js

@@ -45,4 +45,3 @@ const MCScanAnchorsAdapter = (0, configuration_1.ConfigurationSchema)('MCScanAnc
     },
 }, { explicitlyTyped: true });
 exports.default = MCScanAnchorsAdapter;
-//# sourceMappingURL=configSchema.js.map

package/dist/MCScanAnchorsAdapter/index.js

@@ -39,4 +39,3 @@ exports.default = (pluginManager) => {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./MCScanAnchorsAdapter'))).then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/MCScanSimpleAnchorsAdapter/MCScanSimpleAnchorsAdapter.js

@@ -118,4 +118,3 @@ class MCScanAnchorsAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
 }
 MCScanAnchorsAdapter.capabilities = ['getFeatures', 'getRefNames'];
 exports.default = MCScanAnchorsAdapter;
-//# sourceMappingURL=MCScanSimpleAnchorsAdapter.js.map

package/dist/MCScanSimpleAnchorsAdapter/configSchema.js

@@ -45,4 +45,3 @@ const MCScanSimpleAnchorsAdapter = (0, configuration_1.ConfigurationSchema)('MCS
     },
 }, { explicitlyTyped: true });
 exports.default = MCScanSimpleAnchorsAdapter;
-//# sourceMappingURL=configSchema.js.map

package/dist/MCScanSimpleAnchorsAdapter/index.js

@@ -39,4 +39,3 @@ exports.default = (pluginManager) => {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./MCScanSimpleAnchorsAdapter'))).then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/MashMapAdapter/MashMapAdapter.js

@@ -39,4 +39,3 @@ function parseMashMapLine(line) {
         },
     };
 }
-//# sourceMappingURL=MashMapAdapter.js.map

package/dist/MashMapAdapter/configSchema.js

@@ -42,4 +42,3 @@ const MashMapAdapter = (0, configuration_1.ConfigurationSchema)('MashMapAdapter'
     },
 }, { explicitlyTyped: true });
 exports.default = MashMapAdapter;
-//# sourceMappingURL=configSchema.js.map

package/dist/MashMapAdapter/index.js

@@ -39,4 +39,3 @@ exports.default = (pluginManager) => {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./MashMapAdapter'))).then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/PAFAdapter/PAFAdapter.js

@@ -149,4 +149,3 @@ class PAFAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
 }
 PAFAdapter.capabilities = ['getFeatures', 'getRefNames'];
 exports.default = PAFAdapter;
-//# sourceMappingURL=PAFAdapter.js.map

package/dist/PAFAdapter/SyntenyFeature.js

@@ -14,4 +14,3 @@ class SyntenyFeature extends util_1.SimpleFeature {
     }
 }
 exports.default = SyntenyFeature;
-//# sourceMappingURL=SyntenyFeature.js.map

package/dist/PAFAdapter/configSchema.js

@@ -42,4 +42,3 @@ const PAFAdapter = (0, configuration_1.ConfigurationSchema)('PAFAdapter', {
     },
 }, { explicitlyTyped: true });
 exports.default = PAFAdapter;
-//# sourceMappingURL=configSchema.js.map

package/dist/PAFAdapter/index.js

@@ -39,4 +39,3 @@ exports.default = (pluginManager) => {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./PAFAdapter'))).then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/dist/PAFAdapter/util.js

@@ -131,4 +131,3 @@ function swapIndelCigar(cigar) {
     return cigar.replaceAll('D', 'K').replaceAll('I', 'D').replaceAll('K', 'I');
 }
 exports.swapIndelCigar = swapIndelCigar;
-//# sourceMappingURL=util.js.map

package/dist/index.js

@@ -48,4 +48,3 @@ class ComparativeAdaptersPlugin extends Plugin_1.default {
     }
 }
 exports.default = ComparativeAdaptersPlugin;
-//# sourceMappingURL=index.js.map

package/dist/util.js

@@ -54,4 +54,3 @@ function parseLineByLine(buffer, cb) {
     return entries;
 }
 exports.parseLineByLine = parseLineByLine;
-//# sourceMappingURL=util.js.map

package/esm/ChainAdapter/ChainAdapter.js

@@ -13,4 +13,3 @@ export default class ChainAdapter extends PAFAdapter {
         return paf_chain2paf(buf);
     }
 }
-//# sourceMappingURL=ChainAdapter.js.map

package/esm/ChainAdapter/configSchema.js

@@ -40,4 +40,3 @@ const ChainAdapter = ConfigurationSchema('ChainAdapter', {
     },
 }, { explicitlyTyped: true });
 export default ChainAdapter;
-//# sourceMappingURL=configSchema.js.map

package/esm/ChainAdapter/index.js

@@ -11,4 +11,3 @@ export default (pluginManager) => {
         getAdapterClass: () => import('./ChainAdapter').then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/ChainAdapter/util.js

@@ -127,4 +127,3 @@ export function paf_chain2paf(buffer) {
     }
     return records;
 }
-//# sourceMappingURL=util.js.map

package/esm/DeltaAdapter/DeltaAdapter.js

@@ -13,4 +13,3 @@ export default class DeltaAdapter extends PAFAdapter {
         return paf_delta2paf(buf);
     }
 }
-//# sourceMappingURL=DeltaAdapter.js.map

package/esm/DeltaAdapter/configSchema.js

@@ -40,4 +40,3 @@ const DeltaAdapter = ConfigurationSchema('DeltaAdapter', {
     },
 }, { explicitlyTyped: true });
 export default DeltaAdapter;
-//# sourceMappingURL=configSchema.js.map

package/esm/DeltaAdapter/index.js

@@ -11,4 +11,3 @@ export default (pluginManager) => {
         getAdapterClass: () => import('./DeltaAdapter').then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/DeltaAdapter/util.js

@@ -145,4 +145,3 @@ export function paf_delta2paf(buffer) {
     }
     return records;
 }
-//# sourceMappingURL=util.js.map

package/esm/MCScanAnchorsAdapter/MCScanAnchorsAdapter.js

@@ -91,4 +91,3 @@ class MCScanAnchorsAdapter extends BaseFeatureDataAdapter {
 }
 MCScanAnchorsAdapter.capabilities = ['getFeatures', 'getRefNames'];
 export default MCScanAnchorsAdapter;
-//# sourceMappingURL=MCScanAnchorsAdapter.js.map

package/esm/MCScanAnchorsAdapter/configSchema.js

@@ -43,4 +43,3 @@ const MCScanAnchorsAdapter = ConfigurationSchema('MCScanAnchorsAdapter', {
     },
 }, { explicitlyTyped: true });
 export default MCScanAnchorsAdapter;
-//# sourceMappingURL=configSchema.js.map

package/esm/MCScanAnchorsAdapter/index.js

@@ -11,4 +11,3 @@ export default (pluginManager) => {
         getAdapterClass: () => import('./MCScanAnchorsAdapter').then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/MCScanSimpleAnchorsAdapter/MCScanSimpleAnchorsAdapter.js

@@ -113,4 +113,3 @@ class MCScanAnchorsAdapter extends BaseFeatureDataAdapter {
 }
 MCScanAnchorsAdapter.capabilities = ['getFeatures', 'getRefNames'];
 export default MCScanAnchorsAdapter;
-//# sourceMappingURL=MCScanSimpleAnchorsAdapter.js.map

package/esm/MCScanSimpleAnchorsAdapter/configSchema.js

@@ -43,4 +43,3 @@ const MCScanSimpleAnchorsAdapter = ConfigurationSchema('MCScanSimpleAnchorsAdapt
     },
 }, { explicitlyTyped: true });
 export default MCScanSimpleAnchorsAdapter;
-//# sourceMappingURL=configSchema.js.map

package/esm/MCScanSimpleAnchorsAdapter/index.js

@@ -11,4 +11,3 @@ export default (pluginManager) => {
         getAdapterClass: () => import('./MCScanSimpleAnchorsAdapter').then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/MashMapAdapter/MashMapAdapter.js

@@ -33,4 +33,3 @@ function parseMashMapLine(line) {
         },
     };
 }
-//# sourceMappingURL=MashMapAdapter.js.map

package/esm/MashMapAdapter/configSchema.js

@@ -40,4 +40,3 @@ const MashMapAdapter = ConfigurationSchema('MashMapAdapter', {
     },
 }, { explicitlyTyped: true });
 export default MashMapAdapter;
-//# sourceMappingURL=configSchema.js.map

package/esm/MashMapAdapter/index.js

@@ -11,4 +11,3 @@ export default (pluginManager) => {
         getAdapterClass: () => import('./MashMapAdapter').then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/PAFAdapter/PAFAdapter.js

@@ -144,4 +144,3 @@ class PAFAdapter extends BaseFeatureDataAdapter {
 }
 PAFAdapter.capabilities = ['getFeatures', 'getRefNames'];
 export default PAFAdapter;
-//# sourceMappingURL=PAFAdapter.js.map

package/esm/PAFAdapter/SyntenyFeature.js

@@ -11,4 +11,3 @@ export default class SyntenyFeature extends SimpleFeature {
         return super.get(arg);
     }
 }
-//# sourceMappingURL=SyntenyFeature.js.map

package/esm/PAFAdapter/configSchema.js

@@ -40,4 +40,3 @@ const PAFAdapter = ConfigurationSchema('PAFAdapter', {
     },
 }, { explicitlyTyped: true });
 export default PAFAdapter;
-//# sourceMappingURL=configSchema.js.map

package/esm/PAFAdapter/index.js

@@ -11,4 +11,3 @@ export default (pluginManager) => {
         getAdapterClass: () => import('./PAFAdapter').then(r => r.default),
     }));
 };
-//# sourceMappingURL=index.js.map

package/esm/PAFAdapter/util.js

@@ -124,4 +124,3 @@ export function flipCigar(cigar) {
 export function swapIndelCigar(cigar) {
     return cigar.replaceAll('D', 'K').replaceAll('I', 'D').replaceAll('K', 'I');
 }
-//# sourceMappingURL=util.js.map

package/esm/index.js

@@ -42,4 +42,3 @@ export default class ComparativeAdaptersPlugin extends Plugin {
         });
     }
 }
-//# sourceMappingURL=index.js.map

package/esm/util.js

@@ -46,4 +46,3 @@ export function parseLineByLine(buffer, cb) {
     }
     return entries;
 }
-//# sourceMappingURL=util.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-comparative-adapters",
-  "version": "2.6.1",
+  "version": "2.6.3",
   "description": "JBrowse 2 comparative adapters",
   "keywords": [
     "jbrowse",
@@ -20,7 +20,6 @@
   "main": "dist/index.js",
   "files": [
     "dist",
-    "src",
     "esm"
   ],
   "scripts": {
@@ -33,7 +32,7 @@
     "useSrc": "node ../../scripts/useSrc.js",
     "prebuild": "npm run clean",
     "build:esm": "tsc --build tsconfig.build.esm.json",
-    "build:es5": "tsc --build tsconfig.build.es5.json",
+    "build:commonjs": "tsc --build tsconfig.build.commonjs.json",
     "clean": "rimraf dist esm *.tsbuildinfo"
   },
   "dependencies": {
@@ -59,5 +58,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "1cbe7ba097fb2d2763c776e5e429e4670cdd583c"
+  "gitHead": "ed402c87efb0904858d602c363bd1757d5742129"
 }

package/dist/ChainAdapter/ChainAdapter.js.map

@@ -1 +0,0 @@
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package/dist/ChainAdapter/configSchema.js.map

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package/dist/ChainAdapter/index.js.map

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package/dist/DeltaAdapter/DeltaAdapter.js.map

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package/esm/MCScanAnchorsAdapter/MCScanAnchorsAdapter.js.map

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package/esm/MCScanAnchorsAdapter/configSchema.js.map

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package/esm/MCScanAnchorsAdapter/index.js.map

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package/esm/MCScanSimpleAnchorsAdapter/MCScanSimpleAnchorsAdapter.js.map

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