@jbrowse/plugin-comparative-adapters 2.16.1 → 2.17.0

package/esm/util.js

@@ -1,5 +1,4 @@
-import { unzip } from '@gmod/bgzf-filehandle';
-import { isGzip } from '@jbrowse/core/util';
+import { fetchAndMaybeUnzip } from '@jbrowse/core/util';
 export function parseBed(text) {
     return new Map(text
         .split(/\n|\r\n|\r/)
@@ -20,25 +19,29 @@ export function parseBed(text) {
     }));
 }
 export async function readFile(file, opts) {
-    const buffer = (await file.readFile(opts));
-    return new TextDecoder('utf8', { fatal: true }).decode(isGzip(buffer) ? await unzip(buffer) : buffer);
+    const buf = await fetchAndMaybeUnzip(file, opts);
+    const decoder = new TextDecoder('utf8');
+    return decoder.decode(buf);
 }
 export function zip(a, b) {
     return a.map((e, i) => [e, b[i]]);
 }
-const decoder = typeof TextDecoder !== 'undefined' ? new TextDecoder('utf8') : undefined;
 export function parseLineByLine(buffer, cb) {
     let blockStart = 0;
     const entries = [];
+    const decoder = new TextDecoder('utf8');
     while (blockStart < buffer.length) {
         const n = buffer.indexOf('\n', blockStart);
         if (n === -1) {
             break;
         }
         const b = buffer.subarray(blockStart, n);
-        const line = ((decoder === null || decoder === void 0 ? void 0 : decoder.decode(b)) || b.toString()).trim();
+        const line = decoder.decode(b).trim();
         if (line) {
-            entries.push(cb(line));
+            const entry = cb(line);
+            if (entry) {
+                entries.push(entry);
+            }
         }
         blockStart = n + 1;
     }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-comparative-adapters",
-  "version": "2.16.1",
+  "version": "2.17.0",
   "description": "JBrowse 2 comparative adapters",
   "keywords": [
     "jbrowse",
@@ -58,5 +58,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "c6a658d2344989895543f0456b1cf7dd3b937769"
+  "gitHead": "eed30b5e671f8f7823652d7cecc51aa89226de46"
 }