@jbrowse/plugin-circular-view 3.1.0 → 3.3.0

package/dist/CircularView/components/ImportForm.js

@@ -24,7 +24,7 @@ const ImportForm = (0, mobx_react_1.observer)(function ({ model }) {
         : 'No configured assemblies';
     const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
     const err = assemblyError || error;
-    return ((0, jsx_runtime_1.jsxs)(material_1.Container, { className: classes.importFormContainer, children: [err ? ((0, jsx_runtime_1.jsx)(material_1.Grid2, { container: true, spacing: 1, justifyContent: "center", alignItems: "center", children: (0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: err }) })) : null, (0, jsx_runtime_1.jsxs)(material_1.Grid2, { container: true, spacing: 1, justifyContent: "center", alignItems: "center", children: [(0, jsx_runtime_1.jsx)(ui_1.AssemblySelector, { onChange: val => {
+    return ((0, jsx_runtime_1.jsxs)(material_1.Container, { className: classes.importFormContainer, children: [err ? ((0, jsx_runtime_1.jsx)(material_1.Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center", children: (0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: err }) })) : null, (0, jsx_runtime_1.jsxs)(material_1.Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center", children: [(0, jsx_runtime_1.jsx)(ui_1.AssemblySelector, { onChange: val => {
                             model.setError(undefined);
                             setSelectedAsm(val);
                         }, session: session, selected: selectedAsm }), (0, jsx_runtime_1.jsx)(material_1.Button, { disabled: !regions.length, onClick: () => {

package/dist/CircularView/model.js

@@ -152,7 +152,7 @@ function stateModelFactory(pluginManager) {
         },
         get elidedRegions() {
             const visible = [];
-            self.displayedRegions.forEach(region => {
+            for (const region of self.displayedRegions) {
                 const widthBp = region.end - region.start;
                 const widthPx = widthBp / self.bpPerPx;
                 if (widthPx < self.minVisibleWidth) {
@@ -172,7 +172,7 @@ function stateModelFactory(pluginManager) {
                 else {
                     visible.push({ ...region, widthBp, elided: false });
                 }
-            });
+            }
             for (let i = 0; i < visible.length; i += 1) {
                 const v = visible[i];
                 if (v.elided && v.regions.length === 1) {
@@ -183,11 +183,11 @@ function stateModelFactory(pluginManager) {
         },
         get assemblyNames() {
             const assemblyNames = [];
-            self.displayedRegions.forEach(displayedRegion => {
+            for (const displayedRegion of self.displayedRegions) {
                 if (!assemblyNames.includes(displayedRegion.assemblyName)) {
                     assemblyNames.push(displayedRegion.assemblyName);
                 }
-            });
+            }
             return assemblyNames;
         },
         get initialized() {
@@ -324,11 +324,13 @@ function stateModelFactory(pluginManager) {
         hideTrack(trackId) {
             const schema = pluginManager.pluggableConfigSchemaType('track');
             const conf = (0, mobx_state_tree_1.resolveIdentifier)(schema, (0, mobx_state_tree_1.getRoot)(self), trackId);
-            const t = self.tracks.filter(t => t.configuration === conf);
+            const tracks = self.tracks.filter(t => t.configuration === conf);
             (0, mobx_1.transaction)(() => {
-                t.forEach(t => self.tracks.remove(t));
+                for (const track of tracks) {
+                    self.tracks.remove(track);
+                }
             });
-            return t.length;
+            return tracks.length;
         },
         toggleFitToWindowLock() {
             self.lockedFitToWindow = !self.lockedFitToWindow;

package/dist/LaunchCircularView/index.js

@@ -15,8 +15,8 @@ function LaunchCircularViewF(pluginManager) {
             throw new Error(`Assembly "${assembly}" not found when launching circular genome view`);
         }
         view.setDisplayedRegions(asm.regions || []);
-        tracks.forEach(track => {
+        for (const track of tracks) {
             view.showTrack(track);
-        });
+        }
     });
 }

package/esm/CircularView/components/ImportForm.js

@@ -2,7 +2,7 @@ import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
 import { useState } from 'react';
 import { AssemblySelector, ErrorMessage } from '@jbrowse/core/ui';
 import { getSession } from '@jbrowse/core/util';
-import { Button, Container, Grid2 } from '@mui/material';
+import { Button, Container, Grid } from '@mui/material';
 import { observer } from 'mobx-react';
 import { makeStyles } from 'tss-react/mui';
 const useStyles = makeStyles()(theme => ({
@@ -22,7 +22,7 @@ const ImportForm = observer(function ({ model }) {
         : 'No configured assemblies';
     const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
     const err = assemblyError || error;
-    return (_jsxs(Container, { className: classes.importFormContainer, children: [err ? (_jsx(Grid2, { container: true, spacing: 1, justifyContent: "center", alignItems: "center", children: _jsx(ErrorMessage, { error: err }) })) : null, _jsxs(Grid2, { container: true, spacing: 1, justifyContent: "center", alignItems: "center", children: [_jsx(AssemblySelector, { onChange: val => {
+    return (_jsxs(Container, { className: classes.importFormContainer, children: [err ? (_jsx(Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center", children: _jsx(ErrorMessage, { error: err }) })) : null, _jsxs(Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center", children: [_jsx(AssemblySelector, { onChange: val => {
                             model.setError(undefined);
                             setSelectedAsm(val);
                         }, session: session, selected: selectedAsm }), _jsx(Button, { disabled: !regions.length, onClick: () => {

package/esm/CircularView/model.js

@@ -114,7 +114,7 @@ function stateModelFactory(pluginManager) {
         },
         get elidedRegions() {
             const visible = [];
-            self.displayedRegions.forEach(region => {
+            for (const region of self.displayedRegions) {
                 const widthBp = region.end - region.start;
                 const widthPx = widthBp / self.bpPerPx;
                 if (widthPx < self.minVisibleWidth) {
@@ -134,7 +134,7 @@ function stateModelFactory(pluginManager) {
                 else {
                     visible.push({ ...region, widthBp, elided: false });
                 }
-            });
+            }
             for (let i = 0; i < visible.length; i += 1) {
                 const v = visible[i];
                 if (v.elided && v.regions.length === 1) {
@@ -145,11 +145,11 @@ function stateModelFactory(pluginManager) {
         },
         get assemblyNames() {
             const assemblyNames = [];
-            self.displayedRegions.forEach(displayedRegion => {
+            for (const displayedRegion of self.displayedRegions) {
                 if (!assemblyNames.includes(displayedRegion.assemblyName)) {
                     assemblyNames.push(displayedRegion.assemblyName);
                 }
-            });
+            }
             return assemblyNames;
         },
         get initialized() {
@@ -286,11 +286,13 @@ function stateModelFactory(pluginManager) {
         hideTrack(trackId) {
             const schema = pluginManager.pluggableConfigSchemaType('track');
             const conf = resolveIdentifier(schema, getRoot(self), trackId);
-            const t = self.tracks.filter(t => t.configuration === conf);
+            const tracks = self.tracks.filter(t => t.configuration === conf);
             transaction(() => {
-                t.forEach(t => self.tracks.remove(t));
+                for (const track of tracks) {
+                    self.tracks.remove(track);
+                }
             });
-            return t.length;
+            return tracks.length;
         },
         toggleFitToWindowLock() {
             self.lockedFitToWindow = !self.lockedFitToWindow;

package/esm/LaunchCircularView/index.js

@@ -12,8 +12,8 @@ export default function LaunchCircularViewF(pluginManager) {
             throw new Error(`Assembly "${assembly}" not found when launching circular genome view`);
         }
         view.setDisplayedRegions(asm.regions || []);
-        tracks.forEach(track => {
+        for (const track of tracks) {
             view.showTrack(track);
-        });
+        }
     });
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-circular-view",
-  "version": "3.1.0",
+  "version": "3.3.0",
   "description": "JBrowse 2 circular view",
   "keywords": [
     "jbrowse",
@@ -36,9 +36,9 @@
     "clean": "rimraf dist esm *.tsbuildinfo"
   },
   "dependencies": {
-    "@jbrowse/core": "^3.1.0",
-    "@mui/icons-material": "^6.0.0",
-    "@mui/material": "^6.0.0",
+    "@jbrowse/core": "^3.3.0",
+    "@mui/icons-material": "^7.0.0",
+    "@mui/material": "^7.0.0",
     "@types/file-saver": "^2.0.0",
     "file-saver": "^2.0.0",
     "mobx": "^6.0.0",
@@ -56,5 +56,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "91492049ddea0aed90eb24d3c066c2d9f5a6b189"
+  "gitHead": "0bb64d8cc7ecdd167515308b31eec3d9acbc59e4"
 }