@jbrowse/plugin-circular-view 2.6.1 → 2.6.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (104) hide show
  1. package/dist/BaseChordDisplay/components/BaseChordDisplay.js +0 -1
  2. package/dist/BaseChordDisplay/components/DisplayError.js +0 -1
  3. package/dist/BaseChordDisplay/components/Loading.js +0 -1
  4. package/dist/BaseChordDisplay/index.js +0 -1
  5. package/dist/BaseChordDisplay/models/configSchema.js +0 -1
  6. package/dist/BaseChordDisplay/models/model.js +0 -1
  7. package/dist/BaseChordDisplay/models/renderReaction.js +0 -1
  8. package/dist/CircularView/components/CircularView.js +0 -1
  9. package/dist/CircularView/components/Controls.js +0 -1
  10. package/dist/CircularView/components/ExportSvgDialog.js +0 -1
  11. package/dist/CircularView/components/ImportForm.js +0 -1
  12. package/dist/CircularView/components/Ruler.js +0 -1
  13. package/dist/CircularView/index.js +0 -1
  14. package/dist/CircularView/models/CircularView.js +0 -1
  15. package/dist/CircularView/models/slices.js +0 -1
  16. package/dist/CircularView/models/viewportVisibleRegion.js +0 -1
  17. package/dist/CircularView/svgcomponents/SVGBackground.js +2 -2
  18. package/dist/CircularView/svgcomponents/SVGCircularView.js +0 -1
  19. package/dist/LaunchCircularView/index.js +0 -1
  20. package/dist/index.js +0 -1
  21. package/esm/BaseChordDisplay/components/BaseChordDisplay.js +0 -1
  22. package/esm/BaseChordDisplay/components/DisplayError.js +0 -1
  23. package/esm/BaseChordDisplay/components/Loading.js +0 -1
  24. package/esm/BaseChordDisplay/index.js +0 -1
  25. package/esm/BaseChordDisplay/models/configSchema.js +0 -1
  26. package/esm/BaseChordDisplay/models/model.js +0 -1
  27. package/esm/BaseChordDisplay/models/renderReaction.js +0 -1
  28. package/esm/CircularView/components/CircularView.js +0 -1
  29. package/esm/CircularView/components/Controls.js +0 -1
  30. package/esm/CircularView/components/ExportSvgDialog.js +0 -1
  31. package/esm/CircularView/components/ImportForm.js +0 -1
  32. package/esm/CircularView/components/Ruler.js +0 -1
  33. package/esm/CircularView/index.js +0 -1
  34. package/esm/CircularView/models/CircularView.js +0 -1
  35. package/esm/CircularView/models/slices.js +0 -1
  36. package/esm/CircularView/models/viewportVisibleRegion.js +0 -1
  37. package/esm/CircularView/svgcomponents/SVGBackground.js +2 -2
  38. package/esm/CircularView/svgcomponents/SVGCircularView.js +0 -1
  39. package/esm/LaunchCircularView/index.js +0 -1
  40. package/esm/index.js +0 -1
  41. package/package.json +4 -4
  42. package/dist/BaseChordDisplay/components/BaseChordDisplay.js.map +0 -1
  43. package/dist/BaseChordDisplay/components/DisplayError.js.map +0 -1
  44. package/dist/BaseChordDisplay/components/Loading.js.map +0 -1
  45. package/dist/BaseChordDisplay/index.js.map +0 -1
  46. package/dist/BaseChordDisplay/models/configSchema.js.map +0 -1
  47. package/dist/BaseChordDisplay/models/model.js.map +0 -1
  48. package/dist/BaseChordDisplay/models/renderReaction.js.map +0 -1
  49. package/dist/CircularView/components/CircularView.js.map +0 -1
  50. package/dist/CircularView/components/Controls.js.map +0 -1
  51. package/dist/CircularView/components/ExportSvgDialog.js.map +0 -1
  52. package/dist/CircularView/components/ImportForm.js.map +0 -1
  53. package/dist/CircularView/components/Ruler.js.map +0 -1
  54. package/dist/CircularView/index.js.map +0 -1
  55. package/dist/CircularView/models/CircularView.js.map +0 -1
  56. package/dist/CircularView/models/slices.js.map +0 -1
  57. package/dist/CircularView/models/viewportVisibleRegion.js.map +0 -1
  58. package/dist/CircularView/svgcomponents/SVGBackground.js.map +0 -1
  59. package/dist/CircularView/svgcomponents/SVGCircularView.js.map +0 -1
  60. package/dist/LaunchCircularView/index.js.map +0 -1
  61. package/dist/index.js.map +0 -1
  62. package/esm/BaseChordDisplay/components/BaseChordDisplay.js.map +0 -1
  63. package/esm/BaseChordDisplay/components/DisplayError.js.map +0 -1
  64. package/esm/BaseChordDisplay/components/Loading.js.map +0 -1
  65. package/esm/BaseChordDisplay/index.js.map +0 -1
  66. package/esm/BaseChordDisplay/models/configSchema.js.map +0 -1
  67. package/esm/BaseChordDisplay/models/model.js.map +0 -1
  68. package/esm/BaseChordDisplay/models/renderReaction.js.map +0 -1
  69. package/esm/CircularView/components/CircularView.js.map +0 -1
  70. package/esm/CircularView/components/Controls.js.map +0 -1
  71. package/esm/CircularView/components/ExportSvgDialog.js.map +0 -1
  72. package/esm/CircularView/components/ImportForm.js.map +0 -1
  73. package/esm/CircularView/components/Ruler.js.map +0 -1
  74. package/esm/CircularView/index.js.map +0 -1
  75. package/esm/CircularView/models/CircularView.js.map +0 -1
  76. package/esm/CircularView/models/slices.js.map +0 -1
  77. package/esm/CircularView/models/viewportVisibleRegion.js.map +0 -1
  78. package/esm/CircularView/svgcomponents/SVGBackground.js.map +0 -1
  79. package/esm/CircularView/svgcomponents/SVGCircularView.js.map +0 -1
  80. package/esm/LaunchCircularView/index.js.map +0 -1
  81. package/esm/index.js.map +0 -1
  82. package/src/BaseChordDisplay/components/BaseChordDisplay.tsx +0 -26
  83. package/src/BaseChordDisplay/components/DisplayError.tsx +0 -47
  84. package/src/BaseChordDisplay/components/Loading.tsx +0 -111
  85. package/src/BaseChordDisplay/index.ts +0 -3
  86. package/src/BaseChordDisplay/models/configSchema.ts +0 -30
  87. package/src/BaseChordDisplay/models/model.tsx +0 -314
  88. package/src/BaseChordDisplay/models/renderReaction.ts +0 -75
  89. package/src/CircularView/components/CircularView.tsx +0 -128
  90. package/src/CircularView/components/Controls.tsx +0 -119
  91. package/src/CircularView/components/ExportSvgDialog.tsx +0 -132
  92. package/src/CircularView/components/ImportForm.tsx +0 -68
  93. package/src/CircularView/components/Ruler.tsx +0 -265
  94. package/src/CircularView/index.ts +0 -16
  95. package/src/CircularView/models/CircularView.ts +0 -621
  96. package/src/CircularView/models/__snapshots__/slices.test.js.snap +0 -91
  97. package/src/CircularView/models/slices.test.js +0 -70
  98. package/src/CircularView/models/slices.ts +0 -101
  99. package/src/CircularView/models/viewportVisibleRegion.test.js +0 -168
  100. package/src/CircularView/models/viewportVisibleRegion.ts +0 -272
  101. package/src/CircularView/svgcomponents/SVGBackground.tsx +0 -21
  102. package/src/CircularView/svgcomponents/SVGCircularView.tsx +0 -58
  103. package/src/LaunchCircularView/index.ts +0 -48
  104. package/src/index.ts +0 -43
@@ -1,48 +0,0 @@
1
- import { when } from 'mobx'
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- import { AbstractSessionModel } from '@jbrowse/core/util'
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- import PluginManager from '@jbrowse/core/PluginManager'
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-
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- // locals
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- import { CircularViewModel } from '../CircularView/models/CircularView'
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-
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- type CGV = CircularViewModel
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-
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- export default (pluginManager: PluginManager) => {
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- pluginManager.addToExtensionPoint(
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- 'LaunchView-CircularView',
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- // @ts-expect-error
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- async ({
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- session,
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- assembly,
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- loc,
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- tracks = [],
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- }: {
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- session: AbstractSessionModel
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- assembly?: string
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- loc: string
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- tracks?: string[]
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- }) => {
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- const { assemblyManager } = session
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- const view = session.addView('CircularView', {}) as CGV
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-
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- await when(() => view.initialized)
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-
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- if (!assembly) {
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- throw new Error(
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- 'No assembly provided when launching circular genome view',
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- )
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- }
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-
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- const asm = await assemblyManager.waitForAssembly(assembly)
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- if (!asm) {
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- throw new Error(
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- `Assembly "${assembly}" not found when launching circular genome view`,
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- )
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- }
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-
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- view.setDisplayedRegions(asm.regions || [])
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-
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- tracks.forEach(track => view.showTrack(track))
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- },
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- )
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- }
package/src/index.ts DELETED
@@ -1,43 +0,0 @@
1
- import { AbstractSessionModel, isAbstractMenuManager } from '@jbrowse/core/util'
2
- import PluginManager from '@jbrowse/core/PluginManager'
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- import Plugin from '@jbrowse/core/Plugin'
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-
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- // locals
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-
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- import CircularViewF from './CircularView'
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- import LaunchCircularViewF from './LaunchCircularView'
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-
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- // icons
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- import DataUsageIcon from '@mui/icons-material/DataUsage'
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-
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- export default class CircularViewPlugin extends Plugin {
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- name = 'CircularViewPlugin'
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-
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- install(pluginManager: PluginManager) {
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- CircularViewF(pluginManager)
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- LaunchCircularViewF(pluginManager)
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- }
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-
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- configure(pluginManager: PluginManager) {
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- if (isAbstractMenuManager(pluginManager.rootModel)) {
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- pluginManager.rootModel.appendToSubMenu(['Add'], {
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- label: 'Circular view',
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- icon: DataUsageIcon,
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- onClick: (session: AbstractSessionModel) => {
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- session.addView('CircularView', {})
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- },
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- })
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- }
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- }
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- }
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-
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- export {
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- baseChordDisplayConfig,
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- BaseChordDisplayModel,
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- BaseChordDisplayComponent,
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- } from './BaseChordDisplay'
39
-
40
- export {
41
- type CircularViewModel,
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- type CircularViewStateModel,
43
- } from './CircularView/models/CircularView'