@jbrowse/plugin-circular-view 2.6.1 → 2.6.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseChordDisplay/components/BaseChordDisplay.js +0 -1
- package/dist/BaseChordDisplay/components/DisplayError.js +0 -1
- package/dist/BaseChordDisplay/components/Loading.js +0 -1
- package/dist/BaseChordDisplay/index.js +0 -1
- package/dist/BaseChordDisplay/models/configSchema.js +0 -1
- package/dist/BaseChordDisplay/models/model.js +0 -1
- package/dist/BaseChordDisplay/models/renderReaction.js +0 -1
- package/dist/CircularView/components/CircularView.js +0 -1
- package/dist/CircularView/components/Controls.js +0 -1
- package/dist/CircularView/components/ExportSvgDialog.js +0 -1
- package/dist/CircularView/components/ImportForm.js +0 -1
- package/dist/CircularView/components/Ruler.js +0 -1
- package/dist/CircularView/index.js +0 -1
- package/dist/CircularView/models/CircularView.js +0 -1
- package/dist/CircularView/models/slices.js +0 -1
- package/dist/CircularView/models/viewportVisibleRegion.js +0 -1
- package/dist/CircularView/svgcomponents/SVGBackground.js +2 -2
- package/dist/CircularView/svgcomponents/SVGCircularView.js +0 -1
- package/dist/LaunchCircularView/index.js +0 -1
- package/dist/index.js +0 -1
- package/esm/BaseChordDisplay/components/BaseChordDisplay.js +0 -1
- package/esm/BaseChordDisplay/components/DisplayError.js +0 -1
- package/esm/BaseChordDisplay/components/Loading.js +0 -1
- package/esm/BaseChordDisplay/index.js +0 -1
- package/esm/BaseChordDisplay/models/configSchema.js +0 -1
- package/esm/BaseChordDisplay/models/model.js +0 -1
- package/esm/BaseChordDisplay/models/renderReaction.js +0 -1
- package/esm/CircularView/components/CircularView.js +0 -1
- package/esm/CircularView/components/Controls.js +0 -1
- package/esm/CircularView/components/ExportSvgDialog.js +0 -1
- package/esm/CircularView/components/ImportForm.js +0 -1
- package/esm/CircularView/components/Ruler.js +0 -1
- package/esm/CircularView/index.js +0 -1
- package/esm/CircularView/models/CircularView.js +0 -1
- package/esm/CircularView/models/slices.js +0 -1
- package/esm/CircularView/models/viewportVisibleRegion.js +0 -1
- package/esm/CircularView/svgcomponents/SVGBackground.js +2 -2
- package/esm/CircularView/svgcomponents/SVGCircularView.js +0 -1
- package/esm/LaunchCircularView/index.js +0 -1
- package/esm/index.js +0 -1
- package/package.json +4 -4
- package/dist/BaseChordDisplay/components/BaseChordDisplay.js.map +0 -1
- package/dist/BaseChordDisplay/components/DisplayError.js.map +0 -1
- package/dist/BaseChordDisplay/components/Loading.js.map +0 -1
- package/dist/BaseChordDisplay/index.js.map +0 -1
- package/dist/BaseChordDisplay/models/configSchema.js.map +0 -1
- package/dist/BaseChordDisplay/models/model.js.map +0 -1
- package/dist/BaseChordDisplay/models/renderReaction.js.map +0 -1
- package/dist/CircularView/components/CircularView.js.map +0 -1
- package/dist/CircularView/components/Controls.js.map +0 -1
- package/dist/CircularView/components/ExportSvgDialog.js.map +0 -1
- package/dist/CircularView/components/ImportForm.js.map +0 -1
- package/dist/CircularView/components/Ruler.js.map +0 -1
- package/dist/CircularView/index.js.map +0 -1
- package/dist/CircularView/models/CircularView.js.map +0 -1
- package/dist/CircularView/models/slices.js.map +0 -1
- package/dist/CircularView/models/viewportVisibleRegion.js.map +0 -1
- package/dist/CircularView/svgcomponents/SVGBackground.js.map +0 -1
- package/dist/CircularView/svgcomponents/SVGCircularView.js.map +0 -1
- package/dist/LaunchCircularView/index.js.map +0 -1
- package/dist/index.js.map +0 -1
- package/esm/BaseChordDisplay/components/BaseChordDisplay.js.map +0 -1
- package/esm/BaseChordDisplay/components/DisplayError.js.map +0 -1
- package/esm/BaseChordDisplay/components/Loading.js.map +0 -1
- package/esm/BaseChordDisplay/index.js.map +0 -1
- package/esm/BaseChordDisplay/models/configSchema.js.map +0 -1
- package/esm/BaseChordDisplay/models/model.js.map +0 -1
- package/esm/BaseChordDisplay/models/renderReaction.js.map +0 -1
- package/esm/CircularView/components/CircularView.js.map +0 -1
- package/esm/CircularView/components/Controls.js.map +0 -1
- package/esm/CircularView/components/ExportSvgDialog.js.map +0 -1
- package/esm/CircularView/components/ImportForm.js.map +0 -1
- package/esm/CircularView/components/Ruler.js.map +0 -1
- package/esm/CircularView/index.js.map +0 -1
- package/esm/CircularView/models/CircularView.js.map +0 -1
- package/esm/CircularView/models/slices.js.map +0 -1
- package/esm/CircularView/models/viewportVisibleRegion.js.map +0 -1
- package/esm/CircularView/svgcomponents/SVGBackground.js.map +0 -1
- package/esm/CircularView/svgcomponents/SVGCircularView.js.map +0 -1
- package/esm/LaunchCircularView/index.js.map +0 -1
- package/esm/index.js.map +0 -1
- package/src/BaseChordDisplay/components/BaseChordDisplay.tsx +0 -26
- package/src/BaseChordDisplay/components/DisplayError.tsx +0 -47
- package/src/BaseChordDisplay/components/Loading.tsx +0 -111
- package/src/BaseChordDisplay/index.ts +0 -3
- package/src/BaseChordDisplay/models/configSchema.ts +0 -30
- package/src/BaseChordDisplay/models/model.tsx +0 -314
- package/src/BaseChordDisplay/models/renderReaction.ts +0 -75
- package/src/CircularView/components/CircularView.tsx +0 -128
- package/src/CircularView/components/Controls.tsx +0 -119
- package/src/CircularView/components/ExportSvgDialog.tsx +0 -132
- package/src/CircularView/components/ImportForm.tsx +0 -68
- package/src/CircularView/components/Ruler.tsx +0 -265
- package/src/CircularView/index.ts +0 -16
- package/src/CircularView/models/CircularView.ts +0 -621
- package/src/CircularView/models/__snapshots__/slices.test.js.snap +0 -91
- package/src/CircularView/models/slices.test.js +0 -70
- package/src/CircularView/models/slices.ts +0 -101
- package/src/CircularView/models/viewportVisibleRegion.test.js +0 -168
- package/src/CircularView/models/viewportVisibleRegion.ts +0 -272
- package/src/CircularView/svgcomponents/SVGBackground.tsx +0 -21
- package/src/CircularView/svgcomponents/SVGCircularView.tsx +0 -58
- package/src/LaunchCircularView/index.ts +0 -48
- package/src/index.ts +0 -43
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import { when } from 'mobx'
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import { AbstractSessionModel } from '@jbrowse/core/util'
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import PluginManager from '@jbrowse/core/PluginManager'
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// locals
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import { CircularViewModel } from '../CircularView/models/CircularView'
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type CGV = CircularViewModel
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export default (pluginManager: PluginManager) => {
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pluginManager.addToExtensionPoint(
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'LaunchView-CircularView',
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// @ts-expect-error
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async ({
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session,
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assembly,
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loc,
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tracks = [],
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}: {
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session: AbstractSessionModel
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assembly?: string
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loc: string
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tracks?: string[]
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}) => {
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const { assemblyManager } = session
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const view = session.addView('CircularView', {}) as CGV
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await when(() => view.initialized)
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if (!assembly) {
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throw new Error(
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'No assembly provided when launching circular genome view',
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)
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}
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const asm = await assemblyManager.waitForAssembly(assembly)
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if (!asm) {
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throw new Error(
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`Assembly "${assembly}" not found when launching circular genome view`,
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)
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}
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view.setDisplayedRegions(asm.regions || [])
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tracks.forEach(track => view.showTrack(track))
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},
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)
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}
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package/src/index.ts
DELETED
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import { AbstractSessionModel, isAbstractMenuManager } from '@jbrowse/core/util'
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import PluginManager from '@jbrowse/core/PluginManager'
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import Plugin from '@jbrowse/core/Plugin'
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// locals
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import CircularViewF from './CircularView'
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import LaunchCircularViewF from './LaunchCircularView'
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// icons
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import DataUsageIcon from '@mui/icons-material/DataUsage'
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export default class CircularViewPlugin extends Plugin {
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name = 'CircularViewPlugin'
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install(pluginManager: PluginManager) {
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CircularViewF(pluginManager)
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LaunchCircularViewF(pluginManager)
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}
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configure(pluginManager: PluginManager) {
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if (isAbstractMenuManager(pluginManager.rootModel)) {
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pluginManager.rootModel.appendToSubMenu(['Add'], {
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label: 'Circular view',
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icon: DataUsageIcon,
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onClick: (session: AbstractSessionModel) => {
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session.addView('CircularView', {})
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},
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})
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}
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}
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}
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export {
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baseChordDisplayConfig,
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BaseChordDisplayModel,
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BaseChordDisplayComponent,
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} from './BaseChordDisplay'
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export {
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type CircularViewModel,
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type CircularViewStateModel,
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} from './CircularView/models/CircularView'
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