@jbrowse/plugin-circular-view 2.4.2 → 2.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseChordDisplay/components/DisplayError.d.ts +0 -1
- package/dist/BaseChordDisplay/components/Loading.d.ts +0 -1
- package/dist/BaseChordDisplay/models/configSchema.d.ts +11 -1
- package/dist/BaseChordDisplay/models/model.d.ts +8 -3
- package/dist/BaseChordDisplay/models/model.js +5 -0
- package/dist/BaseChordDisplay/models/model.js.map +1 -1
- package/dist/CircularView/components/CircularView.d.ts +0 -1
- package/dist/CircularView/components/Controls.d.ts +0 -1
- package/dist/CircularView/components/ExportSvgDialog.d.ts +0 -1
- package/dist/CircularView/components/ImportForm.d.ts +0 -1
- package/dist/CircularView/components/Ruler.d.ts +0 -1
- package/dist/CircularView/svgcomponents/SVGBackground.d.ts +0 -1
- package/esm/BaseChordDisplay/components/DisplayError.d.ts +0 -1
- package/esm/BaseChordDisplay/components/Loading.d.ts +0 -1
- package/esm/BaseChordDisplay/models/configSchema.d.ts +11 -1
- package/esm/BaseChordDisplay/models/model.d.ts +8 -3
- package/esm/BaseChordDisplay/models/model.js +6 -1
- package/esm/BaseChordDisplay/models/model.js.map +1 -1
- package/esm/CircularView/components/CircularView.d.ts +0 -1
- package/esm/CircularView/components/Controls.d.ts +0 -1
- package/esm/CircularView/components/ExportSvgDialog.d.ts +0 -1
- package/esm/CircularView/components/ImportForm.d.ts +0 -1
- package/esm/CircularView/components/Ruler.d.ts +0 -1
- package/esm/CircularView/svgcomponents/SVGBackground.d.ts +0 -1
- package/package.json +2 -2
- package/src/BaseChordDisplay/models/model.tsx +6 -1
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@@ -1,2 +1,12 @@
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-
declare const baseChordDisplayConfig: import("@jbrowse/core/configuration").
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declare const baseChordDisplayConfig: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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/**
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* #slot
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*/
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onChordClick: {
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type: string;
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description: string;
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defaultValue: boolean;
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contextVariable: string[];
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
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export { baseChordDisplayConfig };
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@@ -10,6 +10,14 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
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} & {
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bezierRadiusRatio: import("mobx-state-tree").IType<number | undefined, number, number>;
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assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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onChordClick: {
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type: string;
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description: string;
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defaultValue: boolean;
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contextVariable: string[];
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
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}, {
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rendererTypeName: string;
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error: unknown;
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@@ -37,9 +45,6 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
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model: {
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id: string;
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type: string;
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/**
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* #action
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*/
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rpcDriverName: string | undefined;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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@@ -15,6 +15,7 @@ const util_1 = require("@jbrowse/core/util");
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const tracks_1 = require("@jbrowse/core/util/tracks");
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// locals
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const renderReaction_1 = require("./renderReaction");
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const configSchema_1 = require("./configSchema");
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/**
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* #stateModel BaseChordDisplay
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* extends `BaseDisplay`
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@@ -30,6 +31,10 @@ exports.BaseChordDisplayModel = mobx_state_tree_1.types
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* #property
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*/
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assemblyName: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
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/**
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* #property
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*/
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configuration: (0, configuration_1.ConfigurationReference)(configSchema_1.baseChordDisplayConfig),
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}))
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.volatile(() => ({
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// NOTE: all this volatile stuff has to be filled in at once
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@@ -1 +1 @@
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-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../../src/BaseChordDisplay/models/model.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,kDAAyB;AACzB,qDAA2D;AAE3D,UAAU;AACV,+
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{"version":3,"file":"model.js","sourceRoot":"","sources":["../../../src/BaseChordDisplay/models/model.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,kDAAyB;AACzB,qDAA2D;AAE3D,UAAU;AACV,+DAA6E;AAC7E,uEAAwE;AACxE,wIAA+G;AAE/G,6CAS2B;AAC3B,sDAIkC;AAElC,SAAS;AACT,qDAA2E;AAM3E,iDAAuD;AAEvD;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAE3D,QAAA,qBAAqB,GAAG,uBAAK;KACvC,OAAO,CACN,kBAAkB,EAClB,oBAAW,EACX,uBAAK,CAAC,KAAK,CAAC;IACV;;OAEG;IACH,iBAAiB,EAAE,GAAG;IACtB;;OAEG;IACH,YAAY,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,MAAM,CAAC;IACvC;;OAEG;IACH,aAAa,EAAE,IAAA,sCAAsB,EAAC,qCAAsB,CAAC;CAC9D,CAAC,CACH;KACA,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;IACf,4DAA4D;IAC5D,8BAA8B;IAC9B,MAAM,EAAE,KAAK;IACb,YAAY,EAAE,SAA2C;IACzD,IAAI,EAAE,SAAS;IACf,IAAI,EAAE,SAA+B;IACrC,OAAO,EAAE,EAAE;IACX,kBAAkB,EAAE,SAA8C;IAClE,UAAU,EAAE,SAA+C;CAC5D,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE;IACd,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,IAAI,CAAC,CAAA;IACtC,MAAM,KAAK,GAAG,IAAI,CAAA;IAClB,OAAO;QACL;;WAEG;QACH,YAAY,CAAC,OAAgB;YAC3B,IAAA,uBAAO,EAAC,IAAI,EAAE,cAAc,EAAE,EAAE,OAAO,EAAE,KAAK,EAAE,aAAa,EAAE,CAAC,CAAA;QAClE,CAAC;KACF,CAAA;AACH,CAAC,CAAC;KACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACd;;OAEG;IACH,IAAI,gBAAgB;QAClB,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAAsB,CAAA;QACzD,MAAM,UAAU,GAAG,IAAI,CAAC,YAAY,CAAA;QACpC,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,OAAO,UAAU,CAAA;SAClB;QAED,MAAM,MAAM,GAAG,IAAA,eAAK,EAAC,UAAU,CAAC,CAAA;QAEhC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE;YACrB,MAAM,OAAO,GAAG,KAAK,CAAC,MAAM,CAAC,MAAM;gBACjC,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO;gBACtB,CAAC,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;YAClB,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;;gBACvB,MAAM,OAAO,GAAG,MAAA,IAAI,CAAC,UAAU,0CAAG,MAAM,CAAC,OAAO,CAAC,CAAA;gBACjD,IAAI,OAAO,IAAI,MAAM,CAAC,OAAO,KAAK,OAAO,EAAE;oBACzC,MAAM,CAAC,OAAO,GAAG,OAAO,CAAA;iBACzB;YACH,CAAC,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;QACF,OAAO,MAAM,CAAA;IACf,CAAC;IAED;;OAEG;IACH,WAAW;QACT,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAAsB,CAAA;QACzD,OAAO;YACL,GAAG,IAAA,6BAAoB,EAAC,IAAI,CAAC;YAC7B,aAAa,EAAE,IAAI,CAAC,aAAa;YACjC,YAAY,EAAE,IAAI;YAClB,YAAY,EAAE,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC,iBAAiB;YACpD,MAAM,EAAE,IAAI,CAAC,QAAQ;YACrB,gBAAgB,EAAE,IAAI,CAAC,gBAAgB;YACvC,YAAY,EAAE,IAAI,CAAC,YAAY;SAChC,CAAA;IACH,CAAC;IAED;;;;OAIG;IACH,IAAI,YAAY;QACd,MAAM,OAAO,GAAG,IAAI,CAAA;QACpB,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,IAAI,CAAC,CAAA;QACtC,MAAM,gBAAgB,GAAG,aAAa,CAAC,eAAe,CACpD,IAAI,CAAC,gBAAgB,CACtB,CAAA;QACD,IAAI,CAAC,gBAAgB,EAAE;YACrB,MAAM,IAAI,KAAK,CAAC,aAAa,OAAO,CAAC,gBAAgB,aAAa,CAAC,CAAA;SACpE;QACD,IAAI,CAAC,gBAAgB,CAAC,cAAc,EAAE;YACpC,MAAM,IAAI,KAAK,CACb,YAAY,OAAO,CAAC,gBAAgB,kEAAkE,CACvG,CAAA;SACF;QACD,OAAO,gBAAgB,CAAA;IACzB,CAAC;IAED;;OAEG;IACH,wBAAwB,CAAC,QAAsB;QAC7C,OAAO,CAAC,CAAC,CAAC,QAAQ,YAAY,mCAAyB,CAAC,CAAA;IAC1D,CAAC;IAED;;;;OAIG;IACH,IAAI,iBAAiB;QACnB,IAAI,CAAC,IAAA,yBAAO,EAAC,IAAI,CAAC,EAAE;YAClB,OAAO,SAAS,CAAA;SACjB;QACD,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;QAChC,IAAI,CAAC,OAAO,EAAE;YACZ,OAAO,SAAS,CAAA;SACjB;QACD,MAAM,EAAE,SAAS,EAAE,GAAG,OAAO,CAAA;QAC7B,gCAAgC;QAChC,IAAI,IAAA,gBAAS,EAAC,SAAS,CAAC,EAAE;YACxB,OAAO,SAAS,CAAC,EAAE,EAAE,CAAA;SACtB;QACD,OAAO,SAAS,CAAA;IAClB,CAAC;CACF,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAChB;;OAEG;IACH,aAAa;QACX,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;QACnB,IAAI,CAAC,OAAO,GAAG,EAAE,CAAA;QACjB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;QAC7B,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;QACrB,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;QACrB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;QACtB,IAAI,CAAC,kBAAkB,GAAG,SAAS,CAAA;IACrC,CAAC;IACD;;OAEG;IACH,aAAa,CAAC,EACZ,OAAO,EACP,IAAI,EACJ,YAAY,EACZ,IAAI,EACJ,kBAAkB,GAQnB;QACC,IAAI,OAAO,EAAE;YACX,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,OAAO,CAAA;YACtB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;YACrB,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;YACrB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,kBAAkB,GAAG,SAAS,CAAA;SACpC;aAAM;YACL,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;YAClB,IAAI,CAAC,OAAO,GAAG,EAAE,CAAA;YACjB,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA;YAChC,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;YAChB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;YAChB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,kBAAkB,GAAG,kBAAkB,CAAA;SAC7C;IACH,CAAC;IACD;;OAEG;IACH,WAAW,CAAC,KAAc;QACxB,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;QACpB,uCAAuC;QACvC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;QACnB,IAAI,CAAC,OAAO,GAAG,EAAE,CAAA;QACjB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;QAC7B,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;QACrB,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;QACrB,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;QAClB,IAAI,CAAC,kBAAkB,GAAG,SAAS,CAAA;IACrC,CAAC;IAED;;OAEG;IACH,aAAa,CAAC,UAAkC;QAC9C,IAAI,CAAC,UAAU,GAAG,UAAU,CAAA;IAC9B,CAAC;CACF,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAChB,WAAW;QACT,IAAA,4BAAqB,EACnB,IAAI,EACJ,mCAAkB;QAElB,mBAAmB;QACnB,qCAAoB,EACpB;YACE,IAAI,EAAE,GAAG,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,EAAE,YAAY;YACzC,kCAAkC;YAClC,eAAe,EAAE,IAAI;SACtB,EACD,IAAI,CAAC,aAAa,EAClB,IAAI,CAAC,aAAa,EAClB,IAAI,CAAC,WAAW,CACjB,CAAA;QAED,IAAA,4BAAqB,EACnB,IAAI,EACJ,GAAG,EAAE,CAAC,CAAC;YACL,aAAa,EAAE,IAAA,8BAAqB,EAAC,IAAI,CAAC,WAAW,CAAC;YACtD,8DAA8D;YAC9D,OAAO,EAAE,IAAA,uBAAO,EAAC,IAAA,2BAAS,EAAM,IAAI,EAAE,CAAC,CAAC,EAAE,SAAS,CAAC;YACpD,eAAe,EAAE,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAC,eAAe;SAClD,CAAC;QACF,8DAA8D;QAC9D,KAAK,EAAE,EAAE,aAAa,EAAE,OAAO,EAAE,eAAe,EAAO,EAAE,MAAM,EAAE,EAAE;YACjE,OAAO,eAAe,CAAC,uBAAuB,CAC5C,OAAO,EACP,aAAa,CAAC,CAAC,CAAC,EAChB,EAAE,MAAM,EAAE,SAAS,EAAE,IAAA,wBAAe,EAAC,IAAI,CAAC,EAAE,CAC7C,CAAA;QACH,CAAC,EACD;YACE,IAAI,EAAE,GAAG,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,EAAE,mBAAmB;YAChD,eAAe,EAAE,IAAI;SACtB,EACD,GAAG,EAAE,GAAE,CAAC,EACR,UAAU,CAAC,EAAE,CAAC,IAAI,CAAC,aAAa,CAAC,UAAU,CAAC,EAC5C,KAAK,CAAC,EAAE;YACN,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;YACpB,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAA;QACtB,CAAC,CACF,CAAA;IACH,CAAC;CACF,CAAC,CAAC;KACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACd;;OAEG;IACH,KAAK,CAAC,SAAS,CACb,IAEC;QAED,MAAM,IAAI,GAAG,IAAA,mCAAkB,EAAC,IAAI,CAAC,CAAA;QACrC,MAAM,SAAS,GAAG,MAAM,IAAA,qCAAoB,EAC1C;YACE,GAAG,IAAI;YACP,SAAS,EAAE,IAAI;YACf,KAAK,EAAE,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,WAAW,CAAC,KAAK;SAC5C,EACD,SAAS,EACT,IAAI,CACL,CAAA;QACD,OAAO,8BAAC,qBAAc,IAAC,SAAS,EAAE,SAAS,GAAI,CAAA;IACjD,CAAC;CACF,CAAC,CAAC,CAAA"}
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declare const baseChordDisplayConfig: import("@jbrowse/core/configuration").
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declare const baseChordDisplayConfig: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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/**
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
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export { baseChordDisplayConfig };
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assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
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model: {
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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import { getParent, isAlive, types } from 'mobx-state-tree';
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// jbrowse
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import { getConf } from '@jbrowse/core/configuration';
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import { ConfigurationReference, getConf } from '@jbrowse/core/configuration';
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import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes/models';
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import CircularChordRendererType from '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType';
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import { getContainingView, getSession, getEnv, isFeature, makeAbortableReaction, ReactRendering, } from '@jbrowse/core/util';
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import { getParentRenderProps, getRpcSessionId, getTrackAssemblyNames, } from '@jbrowse/core/util/tracks';
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import { baseChordDisplayConfig } from './configSchema';
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* #property
|
|
25
26
|
*/
|
|
26
27
|
assemblyName: types.maybe(types.string),
|
|
28
|
+
/**
|
|
29
|
+
* #property
|
|
30
|
+
*/
|
|
31
|
+
configuration: ConfigurationReference(baseChordDisplayConfig),
|
|
27
32
|
}))
|
|
28
33
|
.volatile(() => ({
|
|
29
34
|
// NOTE: all this volatile stuff has to be filled in at once
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../../src/BaseChordDisplay/models/model.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,SAAS,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAE3D,UAAU;AACV,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;
|
|
1
|
+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../../src/BaseChordDisplay/models/model.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,SAAS,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAE3D,UAAU;AACV,OAAO,EAAE,sBAAsB,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,EAAE,WAAW,EAAE,MAAM,4CAA4C,CAAA;AACxE,OAAO,yBAAyB,MAAM,yEAAyE,CAAA;AAE/G,OAAO,EACL,iBAAiB,EACjB,UAAU,EACV,MAAM,EACN,SAAS,EACT,qBAAqB,EAGrB,cAAc,GACf,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EACL,oBAAoB,EACpB,eAAe,EACf,qBAAqB,GACtB,MAAM,2BAA2B,CAAA;AAElC,SAAS;AACT,OAAO,EAAE,kBAAkB,EAAE,oBAAoB,EAAE,MAAM,kBAAkB,CAAA;AAM3E,OAAO,EAAE,sBAAsB,EAAE,MAAM,gBAAgB,CAAA;AAEvD;;;GAGG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,CAAC,MAAM,qBAAqB,GAAG,KAAK;KACvC,OAAO,CACN,kBAAkB,EAClB,WAAW,EACX,KAAK,CAAC,KAAK,CAAC;IACV;;OAEG;IACH,iBAAiB,EAAE,GAAG;IACtB;;OAEG;IACH,YAAY,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;IACvC;;OAEG;IACH,aAAa,EAAE,sBAAsB,CAAC,sBAAsB,CAAC;CAC9D,CAAC,CACH;KACA,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;IACf,4DAA4D;IAC5D,8BAA8B;IAC9B,MAAM,EAAE,KAAK;IACb,YAAY,EAAE,SAA2C;IACzD,IAAI,EAAE,SAAS;IACf,IAAI,EAAE,SAA+B;IACrC,OAAO,EAAE,EAAE;IACX,kBAAkB,EAAE,SAA8C;IAClE,UAAU,EAAE,SAA+C;CAC5D,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE;IACd,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IACtC,MAAM,KAAK,GAAG,IAAI,CAAA;IAClB,OAAO;QACL;;WAEG;QACH,YAAY,CAAC,OAAgB;YAC3B,OAAO,CAAC,IAAI,EAAE,cAAc,EAAE,EAAE,OAAO,EAAE,KAAK,EAAE,aAAa,EAAE,CAAC,CAAA;QAClE,CAAC;KACF,CAAA;AACH,CAAC,CAAC;KACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACd;;OAEG;IACH,IAAI,gBAAgB;QAClB,MAAM,IAAI,GAAG,iBAAiB,CAAC,IAAI,CAAsB,CAAA;QACzD,MAAM,UAAU,GAAG,IAAI,CAAC,YAAY,CAAA;QACpC,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,OAAO,UAAU,CAAA;SAClB;QAED,MAAM,MAAM,GAAG,KAAK,CAAC,UAAU,CAAC,CAAA;QAEhC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE;YACrB,MAAM,OAAO,GAAG,KAAK,CAAC,MAAM,CAAC,MAAM;gBACjC,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO;gBACtB,CAAC,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;YAClB,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;;gBACvB,MAAM,OAAO,GAAG,MAAA,IAAI,CAAC,UAAU,0CAAG,MAAM,CAAC,OAAO,CAAC,CAAA;gBACjD,IAAI,OAAO,IAAI,MAAM,CAAC,OAAO,KAAK,OAAO,EAAE;oBACzC,MAAM,CAAC,OAAO,GAAG,OAAO,CAAA;iBACzB;YACH,CAAC,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;QACF,OAAO,MAAM,CAAA;IACf,CAAC;IAED;;OAEG;IACH,WAAW;QACT,MAAM,IAAI,GAAG,iBAAiB,CAAC,IAAI,CAAsB,CAAA;QACzD,OAAO;YACL,GAAG,oBAAoB,CAAC,IAAI,CAAC;YAC7B,aAAa,EAAE,IAAI,CAAC,aAAa;YACjC,YAAY,EAAE,IAAI;YAClB,YAAY,EAAE,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC,iBAAiB;YACpD,MAAM,EAAE,IAAI,CAAC,QAAQ;YACrB,gBAAgB,EAAE,IAAI,CAAC,gBAAgB;YACvC,YAAY,EAAE,IAAI,CAAC,YAAY;SAChC,CAAA;IACH,CAAC;IAED;;;;OAIG;IACH,IAAI,YAAY;QACd,MAAM,OAAO,GAAG,IAAI,CAAA;QACpB,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;QACtC,MAAM,gBAAgB,GAAG,aAAa,CAAC,eAAe,CACpD,IAAI,CAAC,gBAAgB,CACtB,CAAA;QACD,IAAI,CAAC,gBAAgB,EAAE;YACrB,MAAM,IAAI,KAAK,CAAC,aAAa,OAAO,CAAC,gBAAgB,aAAa,CAAC,CAAA;SACpE;QACD,IAAI,CAAC,gBAAgB,CAAC,cAAc,EAAE;YACpC,MAAM,IAAI,KAAK,CACb,YAAY,OAAO,CAAC,gBAAgB,kEAAkE,CACvG,CAAA;SACF;QACD,OAAO,gBAAgB,CAAA;IACzB,CAAC;IAED;;OAEG;IACH,wBAAwB,CAAC,QAAsB;QAC7C,OAAO,CAAC,CAAC,CAAC,QAAQ,YAAY,yBAAyB,CAAC,CAAA;IAC1D,CAAC;IAED;;;;OAIG;IACH,IAAI,iBAAiB;QACnB,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;YAClB,OAAO,SAAS,CAAA;SACjB;QACD,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;QAChC,IAAI,CAAC,OAAO,EAAE;YACZ,OAAO,SAAS,CAAA;SACjB;QACD,MAAM,EAAE,SAAS,EAAE,GAAG,OAAO,CAAA;QAC7B,gCAAgC;QAChC,IAAI,SAAS,CAAC,SAAS,CAAC,EAAE;YACxB,OAAO,SAAS,CAAC,EAAE,EAAE,CAAA;SACtB;QACD,OAAO,SAAS,CAAA;IAClB,CAAC;CACF,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAChB;;OAEG;IACH,aAAa;QACX,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;QACnB,IAAI,CAAC,OAAO,GAAG,EAAE,CAAA;QACjB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;QAC7B,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;QACrB,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;QACrB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;QACtB,IAAI,CAAC,kBAAkB,GAAG,SAAS,CAAA;IACrC,CAAC;IACD;;OAEG;IACH,aAAa,CAAC,EACZ,OAAO,EACP,IAAI,EACJ,YAAY,EACZ,IAAI,EACJ,kBAAkB,GAQnB;QACC,IAAI,OAAO,EAAE;YACX,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,OAAO,CAAA;YACtB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;YACrB,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;YACrB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,kBAAkB,GAAG,SAAS,CAAA;SACpC;aAAM;YACL,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;YAClB,IAAI,CAAC,OAAO,GAAG,EAAE,CAAA;YACjB,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA;YAChC,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;YAChB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;YAChB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,kBAAkB,GAAG,kBAAkB,CAAA;SAC7C;IACH,CAAC;IACD;;OAEG;IACH,WAAW,CAAC,KAAc;QACxB,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;QACpB,uCAAuC;QACvC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;QACnB,IAAI,CAAC,OAAO,GAAG,EAAE,CAAA;QACjB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;QAC7B,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;QACrB,IAAI,CAAC,IAAI,GAAG,SAAS,CAAA;QACrB,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;QAClB,IAAI,CAAC,kBAAkB,GAAG,SAAS,CAAA;IACrC,CAAC;IAED;;OAEG;IACH,aAAa,CAAC,UAAkC;QAC9C,IAAI,CAAC,UAAU,GAAG,UAAU,CAAA;IAC9B,CAAC;CACF,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAChB,WAAW;QACT,qBAAqB,CACnB,IAAI,EACJ,kBAAkB;QAElB,mBAAmB;QACnB,oBAAoB,EACpB;YACE,IAAI,EAAE,GAAG,IAAI,CAA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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-circular-view",
|
|
3
|
-
"version": "2.
|
|
3
|
+
"version": "2.5.0",
|
|
4
4
|
"description": "JBrowse 2 circular view",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -58,5 +58,5 @@
|
|
|
58
58
|
"distModule": "esm/index.js",
|
|
59
59
|
"srcModule": "src/index.ts",
|
|
60
60
|
"module": "esm/index.js",
|
|
61
|
-
"gitHead": "
|
|
61
|
+
"gitHead": "d1ca073996d008f0fe9a52f7c1a47ae649dcfdaf"
|
|
62
62
|
}
|
|
@@ -3,7 +3,7 @@ import clone from 'clone'
|
|
|
3
3
|
import { getParent, isAlive, types } from 'mobx-state-tree'
|
|
4
4
|
|
|
5
5
|
// jbrowse
|
|
6
|
-
import { getConf } from '@jbrowse/core/configuration'
|
|
6
|
+
import { ConfigurationReference, getConf } from '@jbrowse/core/configuration'
|
|
7
7
|
import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes/models'
|
|
8
8
|
import CircularChordRendererType from '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType'
|
|
9
9
|
import RendererType from '@jbrowse/core/pluggableElementTypes/renderers/RendererType'
|
|
@@ -30,6 +30,7 @@ import {
|
|
|
30
30
|
ExportSvgOptions,
|
|
31
31
|
} from '../../CircularView/models/CircularView'
|
|
32
32
|
import { ThemeOptions } from '@mui/material'
|
|
33
|
+
import { baseChordDisplayConfig } from './configSchema'
|
|
33
34
|
|
|
34
35
|
/**
|
|
35
36
|
* #stateModel BaseChordDisplay
|
|
@@ -50,6 +51,10 @@ export const BaseChordDisplayModel = types
|
|
|
50
51
|
* #property
|
|
51
52
|
*/
|
|
52
53
|
assemblyName: types.maybe(types.string),
|
|
54
|
+
/**
|
|
55
|
+
* #property
|
|
56
|
+
*/
|
|
57
|
+
configuration: ConfigurationReference(baseChordDisplayConfig),
|
|
53
58
|
}),
|
|
54
59
|
)
|
|
55
60
|
.volatile(() => ({
|