@jbrowse/plugin-circular-view 2.3.4 → 2.4.1

package/src/CircularView/models/viewportVisibleRegion.ts

@@ -13,8 +13,7 @@ function findCircleIntersectionX(
     resultArray.push([cx, y])
   }
   const solution = Math.sqrt(r * r - d * d)
-  resultArray.push([cx - solution, y])
-  resultArray.push([cx + solution, y])
+  resultArray.push([cx - solution, y], [cx + solution, y])
 }
 
 function findCircleIntersectionY(
@@ -32,8 +31,7 @@ function findCircleIntersectionY(
     resultArray.push([x, cy])
   }
   const solution = Math.sqrt(r * r - d * d)
-  resultArray.push([x, cy - solution])
-  resultArray.push([x, cy + solution])
+  resultArray.push([x, cy - solution], [x, cy + solution])
 }
 
 function cartesianToTheta(x: number, y: number) {

package/src/CircularView/svgcomponents/SVGBackground.tsx

@@ -0,0 +1,21 @@
+import React from 'react'
+import { useTheme } from '@mui/material'
+
+export default function SVGBackground({
+  width,
+  height,
+  shift,
+}: {
+  width: number
+  height: number
+  shift: number
+}) {
+  const theme = useTheme()
+  return (
+    <rect
+      width={width + shift * 2}
+      height={height}
+      fill={theme.palette.background.default}
+    />
+  )
+}

package/src/CircularView/svgcomponents/SVGCircularView.tsx

@@ -0,0 +1,58 @@
+import React from 'react'
+import { ThemeProvider } from '@mui/material'
+import { renderToStaticMarkup } from 'react-dom/server'
+import { when } from 'mobx'
+import { getSession, radToDeg } from '@jbrowse/core/util'
+import { createJBrowseTheme } from '@jbrowse/core/ui'
+
+// locals
+import { ExportSvgOptions, CircularViewModel } from '../models/CircularView'
+import SVGBackground from './SVGBackground'
+import Ruler from '../components/Ruler'
+
+type CGV = CircularViewModel
+
+export async function renderToSvg(model: CGV, opts: ExportSvgOptions) {
+  await when(() => model.initialized)
+  const { themeName = 'default', Wrapper = ({ children }) => <>{children}</> } =
+    opts
+  const session = getSession(model)
+  const theme = session.allThemes?.()[themeName]
+  const { width, tracks, height } = model
+  const shift = 50
+  const displayResults = await Promise.all(
+    tracks.map(async track => {
+      const display = track.displays[0]
+      await when(() => (display.ready !== undefined ? display.ready : true))
+      return { track, result: await display.renderSvg({ ...opts, theme }) }
+    }),
+  )
+
+  const { staticSlices, offsetRadians, centerXY } = model
+  const deg = radToDeg(offsetRadians)
+
+  // the xlink namespace is used for rendering <image> tag
+  return renderToStaticMarkup(
+    <ThemeProvider theme={createJBrowseTheme(theme)}>
+      <Wrapper>
+        <svg
+          width={width}
+          height={height}
+          xmlns="http://www.w3.org/2000/svg"
+          xmlnsXlink="http://www.w3.org/1999/xlink"
+          viewBox={[0, 0, width + shift * 2, height].toString()}
+        >
+          <SVGBackground width={width} height={height} shift={shift} />
+          <g transform={`translate(${centerXY}) rotate(${deg})`}>
+            {staticSlices.map((slice, i) => (
+              <Ruler key={i} model={model} slice={slice} />
+            ))}
+            {displayResults.map(({ result }, i) => (
+              <React.Fragment key={i}>{result}</React.Fragment>
+            ))}
+          </g>
+        </svg>
+      </Wrapper>
+    </ThemeProvider>,
+  )
+}

package/src/LaunchCircularView/index.ts

@@ -10,7 +10,7 @@ type CGV = CircularViewModel
 export default (pluginManager: PluginManager) => {
   pluginManager.addToExtensionPoint(
     'LaunchView-CircularView',
-    // @ts-ignore
+    // @ts-expect-error
     async ({
       session,
       assembly,

package/src/index.ts

@@ -3,10 +3,7 @@ import PluginManager from '@jbrowse/core/PluginManager'
 import Plugin from '@jbrowse/core/Plugin'
 
 // locals
-import {
-  CircularViewModel,
-  CircularViewStateModel,
-} from './CircularView/models/CircularView'
+
 import CircularViewF from './CircularView'
 import LaunchCircularViewF from './LaunchCircularView'
 
@@ -40,4 +37,7 @@ export {
   BaseChordDisplayComponent,
 } from './BaseChordDisplay'
 
-export type { CircularViewModel, CircularViewStateModel }
+export {
+  type CircularViewModel,
+  type CircularViewStateModel,
+} from './CircularView/models/CircularView'

package/dist/BaseChordDisplay/models/BaseChordDisplayModel.js.map

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package/dist/BaseChordDisplay/models/baseChordDisplayConfig.js.map

@@ -1 +0,0 @@
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package/esm/BaseChordDisplay/models/BaseChordDisplayModel.js.map

@@ -1 +0,0 @@
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package/esm/BaseChordDisplay/models/baseChordDisplayConfig.js.map

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