npm - @jbrowse/plugin-circular-view - Versions diffs - 2.3.4 → 2.4.0 - Mend

@jbrowse/plugin-circular-view 2.3.4 → 2.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (90) hide show

package/esm/BaseChordDisplay/models/{BaseChordDisplayModel.js → model.js} RENAMED Viewed

@@ -1,10 +1,11 @@
+import React from 'react';
 import clone from 'clone';
 import { getParent, isAlive, types } from 'mobx-state-tree';
 // jbrowse
 import { getConf } from '@jbrowse/core/configuration';
 import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes/models';
 import CircularChordRendererType from '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType';
-import { getContainingView, getSession, getEnv, isFeature, makeAbortableReaction, } from '@jbrowse/core/util';
+import { getContainingView, getSession, getEnv, isFeature, makeAbortableReaction, ReactRendering, } from '@jbrowse/core/util';
 import { getParentRenderProps, getRpcSessionId, getTrackAssemblyNames, } from '@jbrowse/core/util/tracks';
 // locals
 import { renderReactionData, renderReactionEffect } from './renderReaction';
@@ -24,19 +25,17 @@ export const BaseChordDisplayModel = types
      */
     assemblyName: types.maybe(types.string),
 }))
-    .volatile(() => {
-    return {
-        // NOTE: all this volatile stuff has to be filled in at once
-        // so that it stays consistent
-        filled: false,
-        reactElement: undefined,
-        data: undefined,
-        html: undefined,
-        message: '',
-        renderingComponent: undefined,
-        refNameMap: undefined,
-    };
-})
+    .volatile(() => ({
+    // NOTE: all this volatile stuff has to be filled in at once
+    // so that it stays consistent
+    filled: false,
+    reactElement: undefined,
+    data: undefined,
+    html: undefined,
+    message: '',
+    renderingComponent: undefined,
+    refNameMap: undefined,
+}))
     .actions(self => {
     const { pluginManager } = getEnv(self);
     const track = self;
@@ -54,18 +53,17 @@ export const BaseChordDisplayModel = types
      * #getter
      */
     get blockDefinitions() {
-        const origSlices = getContainingView(self)
-            .staticSlices;
+        const view = getContainingView(self);
+        const origSlices = view.staticSlices;
         if (!self.refNameMap) {
             return origSlices;
         }
         const slices = clone(origSlices);
-        // eslint-disable-next-line @typescript-eslint/no-explicit-any
-        slices.forEach((slice) => {
+        slices.forEach(slice => {
             const regions = slice.region.elided
                 ? slice.region.regions
                 : [slice.region];
-            regions.forEach((region) => {
+            regions.forEach(region => {
                 var _a;
                 const renamed = (_a = self.refNameMap) === null || _a === void 0 ? void 0 : _a[region.refName];
                 if (renamed && region.refName !== renamed) {
@@ -212,12 +210,24 @@ export const BaseChordDisplayModel = types
         }, {
             name: `${self.type} ${self.id} getting refNames`,
             fireImmediately: true,
-        }, () => { }, refNameMap => {
-            self.setRefNameMap(refNameMap);
-        }, error => {
+        }, () => { }, refNameMap => self.setRefNameMap(refNameMap), error => {
             console.error(error);
             self.setError(error);
         });
     },
+}))
+    .views(self => ({
+    /**
+     * #method
+     */
+    async renderSvg(opts) {
+        const data = renderReactionData(self);
+        const rendering = await renderReactionEffect({
+            ...data,
+            exportSVG: opts,
+            theme: opts.theme || data.renderProps.theme,
+        }, undefined, self);
+        return React.createElement(ReactRendering, { rendering: rendering });
+    },
 }));
-//# sourceMappingURL=BaseChordDisplayModel.js.map
+//# sourceMappingURL=model.js.map

package/esm/BaseChordDisplay/models/model.js.map ADDED Viewed

@@ -0,0 +1 @@

+ 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package/esm/BaseChordDisplay/models/renderReaction.d.ts CHANGED Viewed

@@ -12,7 +12,7 @@ export declare function renderReactionData(self: any): {
         timeout: number;
     };
 };
-export declare function renderReactionEffect(props: any, signal: AbortSignal, self: any): Promise<{
+export declare function renderReactionEffect(props: any, signal: AbortSignal | undefined, self: any): Promise<{
     message: any;
     html?: undefined;
     data?: undefined;

package/esm/BaseChordDisplay/models/renderReaction.js CHANGED Viewed

@@ -27,17 +27,16 @@ export async function renderReactionEffect(
 props, signal,
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 self) {
+    var _a;
     if (!props) {
         throw new Error('cannot render with no props');
     }
-    const { rendererType, rpcManager, cannotBeRenderedReason, renderArgs, renderProps, } = props;
+    const { rendererType, rpcManager, cannotBeRenderedReason, renderArgs, renderProps, exportSVG, } = props;
     if (cannotBeRenderedReason) {
         return { message: cannotBeRenderedReason };
     }
     // don't try to render 0 or NaN radius or no regions
-    if (!props.renderProps.radius ||
-        !props.renderArgs.regions ||
-        !props.renderArgs.regions.length) {
+    if (!renderProps.radius || !((_a = renderArgs.regions) === null || _a === void 0 ? void 0 : _a.length)) {
         return { message: 'Skipping render' };
     }
     // check renderertype compatibility
@@ -47,7 +46,7 @@ self) {
     const { html, ...data } = await rendererType.renderInClient(rpcManager, {
         ...renderArgs,
         ...renderProps,
-        signal,
+        exportSVG,
     });
     return {
         html,

package/esm/BaseChordDisplay/models/renderReaction.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/CircularView/components/CircularView.js CHANGED Viewed

@@ -13,17 +13,10 @@ const useStyles = makeStyles()(theme => ({
         position: 'relative',
         marginBottom: theme.spacing(1),
         overflow: 'hidden',
-        background: 'white',
     },
     scroller: {
         overflow: 'auto',
     },
-    sliceRoot: {
-        background: 'none',
-        // background: theme.palette.background.paper,
-        boxSizing: 'content-box',
-        display: 'block',
-    },
 }));
 const Slices = observer(({ model }) => {
     return (React.createElement(React.Fragment, null,
@@ -49,18 +42,16 @@ const CircularViewLoaded = observer(function ({ model, }) {
     const { classes } = useStyles();
     return (React.createElement("div", { className: classes.root, style: { width, height }, "data-testid": id },
         React.createElement("div", { className: classes.scroller, style: { width, height } },
-            React.createElement("div", { style: {
-                    transform: [`rotate(${offsetRadians}rad)`].join(' '),
+            React.createElement("svg", { style: {
+                    transform: `rotate(${offsetRadians}rad)`,
                     transition: 'transform 0.5s',
                     transformOrigin: centerXY.map(x => `${x}px`).join(' '),
-                } },
-                React.createElement("svg", { style: {
-                        position: 'absolute',
-                        left: 0,
-                        top: 0,
-                    }, className: classes.sliceRoot, width: figureWidth + 'px', height: figureHeight + 'px', version: "1.1" },
-                    React.createElement("g", { transform: `translate(${centerXY})` },
-                        React.createElement(Slices, { model: model }))))),
+                    position: 'absolute',
+                    left: 0,
+                    top: 0,
+                }, width: figureWidth, height: figureHeight },
+                React.createElement("g", { transform: `translate(${centerXY})` },
+                    React.createElement(Slices, { model: model })))),
         React.createElement(Controls, { model: model }),
         hideVerticalResizeHandle ? null : (React.createElement(ResizeHandle, { onDrag: model.resizeHeight, style: {
                 height: dragHandleHeight,

package/esm/CircularView/components/CircularView.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/CircularView/components/Controls.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { CircularViewModel } from '../models/CircularView';
-declare const Controls: ({ model }: {
+declare const _default: ({ model }: {
     model: CircularViewModel;
 }) => JSX.Element;
-export default Controls;
+export default _default;

package/esm/CircularView/components/Controls.js CHANGED Viewed

@@ -1,8 +1,8 @@
-import React from 'react';
+import React, { useState } from 'react';
 import { observer } from 'mobx-react';
 import { IconButton } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
-import { grey } from '@mui/material/colors';
+import JBrowseMenu from '@jbrowse/core/ui/Menu';
 // icons
 import ZoomOutIcon from '@mui/icons-material/ZoomOut';
 import ZoomInIcon from '@mui/icons-material/ZoomIn';
@@ -10,40 +10,53 @@ import RotateLeftIcon from '@mui/icons-material/RotateLeft';
 import RotateRightIcon from '@mui/icons-material/RotateRight';
 import LockOpenIcon from '@mui/icons-material/LockOpen';
 import LockIcon from '@mui/icons-material/Lock';
+import PhotoCamera from '@mui/icons-material/PhotoCamera';
+import MoreVert from '@mui/icons-material/MoreVert';
 import { TrackSelector as TrackSelectorIcon } from '@jbrowse/core/ui/Icons';
-const useStyles = makeStyles()({
-    iconButton: {
-        padding: '4px',
-        margin: '0 2px 0 2px',
-    },
+import { getSession } from '@jbrowse/core/util';
+import ExportSvgDlg from './ExportSvgDialog';
+const useStyles = makeStyles()(theme => ({
     controls: {
-        overflow: 'hidden',
-        whiteSpace: 'nowrap',
         position: 'absolute',
-        background: grey[200],
-        boxSizing: 'border-box',
-        borderRight: '1px solid #a2a2a2',
-        borderBottom: '1px solid #a2a2a2',
+        borderRight: `1px solid ${theme.palette.divider}`,
+        borderBottom: `1px solid ${theme.palette.divider}`,
         left: 0,
         top: 0,
     },
-});
-const Controls = observer(function ({ model }) {
+}));
+export default observer(function ({ model }) {
     const { classes } = useStyles();
+    const [anchorEl, setAnchorEl] = useState(null);
     return (React.createElement("div", { className: classes.controls },
-        React.createElement(IconButton, { onClick: model.zoomOutButton, className: classes.iconButton, title: model.lockedFitToWindow ? 'unlock to zoom out' : 'zoom out', disabled: model.atMaxBpPerPx || model.lockedFitToWindow, color: "secondary" },
+        React.createElement(IconButton, { onClick: model.zoomOutButton, title: model.lockedFitToWindow ? 'unlock to zoom out' : 'zoom out', disabled: model.atMaxBpPerPx || model.lockedFitToWindow },
             React.createElement(ZoomOutIcon, null)),
-        React.createElement(IconButton, { onClick: model.zoomInButton, className: classes.iconButton, title: "zoom in", disabled: model.atMinBpPerPx, color: "secondary" },
+        React.createElement(IconButton, { onClick: model.zoomInButton, disabled: model.atMinBpPerPx, title: "zoom in" },
             React.createElement(ZoomInIcon, null)),
-        React.createElement(IconButton, { onClick: model.rotateCounterClockwiseButton, className: classes.iconButton, title: "rotate counter-clockwise", color: "secondary" },
+        React.createElement(IconButton, { onClick: model.rotateCounterClockwiseButton, title: "rotate counter-clockwise" },
             React.createElement(RotateLeftIcon, null)),
-        React.createElement(IconButton, { onClick: model.rotateClockwiseButton, className: classes.iconButton, title: "rotate clockwise", color: "secondary" },
+        React.createElement(IconButton, { onClick: model.rotateClockwiseButton, title: "rotate clockwise" },
             React.createElement(RotateRightIcon, null)),
-        React.createElement(IconButton, { onClick: model.toggleFitToWindowLock, className: classes.iconButton, title: model.lockedFitToWindow
+        React.createElement(IconButton, { onClick: model.toggleFitToWindowLock, title: model.lockedFitToWindow
                 ? 'locked model to window size'
-                : 'unlocked model to zoom further', disabled: model.tooSmallToLock, color: "secondary" }, model.lockedFitToWindow ? React.createElement(LockIcon, null) : React.createElement(LockOpenIcon, null)),
-        model.hideTrackSelectorButton ? null : (React.createElement(IconButton, { onClick: model.activateTrackSelector, title: "Open track selector", "data-testid": "circular_track_select", color: "secondary" },
-            React.createElement(TrackSelectorIcon, null)))));
+                : 'unlocked model to zoom further', disabled: model.tooSmallToLock }, model.lockedFitToWindow ? React.createElement(LockIcon, null) : React.createElement(LockOpenIcon, null)),
+        React.createElement(IconButton, { onClick: event => setAnchorEl(event.currentTarget) },
+            React.createElement(MoreVert, null)),
+        model.hideTrackSelectorButton ? null : (React.createElement(IconButton, { onClick: model.activateTrackSelector, title: "Open track selector", "data-testid": "circular_track_select" },
+            React.createElement(TrackSelectorIcon, null))),
+        anchorEl ? (React.createElement(JBrowseMenu, { anchorEl: anchorEl, menuItems: [
+                {
+                    label: 'Export SVG',
+                    icon: PhotoCamera,
+                    onClick: () => {
+                        getSession(model).queueDialog(handleClose => [
+                            ExportSvgDlg,
+                            { model, handleClose },
+                        ]);
+                    },
+                },
+            ], onMenuItemClick: (_event, callback) => {
+                callback();
+                setAnchorEl(null);
+            }, open: Boolean(anchorEl), onClose: () => setAnchorEl(null) })) : null));
 });
-export default Controls;
 //# sourceMappingURL=Controls.js.map

package/esm/CircularView/components/Controls.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/CircularView/components/ExportSvgDialog.d.ts ADDED Viewed

@@ -0,0 +1,8 @@
+/// <reference types="react" />
+import { ExportSvgOptions } from '../models/CircularView';
+export default function ExportSvgDlg({ model, handleClose, }: {
+    model: {
+        exportSvg(opts: ExportSvgOptions): Promise<void>;
+    };
+    handleClose: () => void;
+}): JSX.Element;

package/esm/CircularView/components/ExportSvgDialog.js ADDED Viewed

@@ -0,0 +1,50 @@
+import React, { useState } from 'react';
+import { Button, Checkbox, CircularProgress, DialogActions, DialogContent, FormControlLabel, MenuItem, TextField, Typography, } from '@mui/material';
+import { Dialog, ErrorMessage } from '@jbrowse/core/ui';
+import { getSession, useLocalStorage } from '@jbrowse/core/util';
+function LoadingMessage() {
+    return (React.createElement("div", null,
+        React.createElement(CircularProgress, { size: 20, style: { marginRight: 20 } }),
+        React.createElement(Typography, { display: "inline" }, "Creating SVG")));
+}
+function useSvgLocal(key, val) {
+    return useLocalStorage('svg-' + key, val);
+}
+export default function ExportSvgDlg({ model, handleClose, }) {
+    const session = getSession(model);
+    const offscreenCanvas = typeof OffscreenCanvas !== 'undefined';
+    const [rasterizeLayers, setRasterizeLayers] = useState(offscreenCanvas);
+    const [loading, setLoading] = useState(false);
+    const [error, setError] = useState();
+    const [filename, setFilename] = useSvgLocal('file', 'jbrowse.svg');
+    const [themeName, setThemeName] = useSvgLocal('theme', session.themeName || 'default');
+    return (React.createElement(Dialog, { open: true, onClose: handleClose, title: "Export SVG" },
+        React.createElement(DialogContent, null,
+            error ? (React.createElement(ErrorMessage, { error: error })) : loading ? (React.createElement(LoadingMessage, null)) : null,
+            React.createElement(TextField, { helperText: "filename", value: filename, onChange: event => setFilename(event.target.value) }),
+            React.createElement("br", null),
+            session.allThemes ? (React.createElement(TextField, { select: true, label: "Theme", value: themeName, onChange: event => setThemeName(event.target.value) }, Object.entries(session.allThemes()).map(([key, val]) => (React.createElement(MenuItem, { key: key, value: key },
+            // @ts-ignore
+            val.name || '(Unknown name)'))))) : null,
+            offscreenCanvas ? (React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: rasterizeLayers, onChange: () => setRasterizeLayers(val => !val) }), label: "Rasterize canvas based tracks? File may be much larger if this is turned off" })) : (React.createElement(Typography, null, "Note: rasterizing layers not yet supported in this browser, so SVG size may be large"))),
+        React.createElement(DialogActions, null,
+            React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => handleClose() }, "Cancel"),
+            React.createElement(Button, { variant: "contained", color: "primary", type: "submit", onClick: async () => {
+                    setLoading(true);
+                    setError(undefined);
+                    try {
+                        await model.exportSvg({
+                            rasterizeLayers,
+                            filename,
+                            themeName,
+                        });
+                        handleClose();
+                    }
+                    catch (e) {
+                        console.error(e);
+                        setError(e);
+                        setLoading(false);
+                    }
+                } }, "Submit"))));
+}
+//# sourceMappingURL=ExportSvgDialog.js.map

package/esm/CircularView/components/ExportSvgDialog.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"ExportSvgDialog.js","sourceRoot":"","sources":["../../../src/CircularView/components/ExportSvgDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,MAAM,EACN,QAAQ,EACR,gBAAgB,EAChB,aAAa,EACb,aAAa,EACb,gBAAgB,EAChB,QAAQ,EACR,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAIvD,OAAO,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAA;AAEhE,SAAS,cAAc;IACrB,OAAO,CACL;QACE,oBAAC,gBAAgB,IAAC,IAAI,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,WAAW,EAAE,EAAE,EAAE,GAAI;QAC1D,oBAAC,UAAU,IAAC,OAAO,EAAC,QAAQ,mBAA0B,CAClD,CACP,CAAA;AACH,CAAC;AAED,SAAS,WAAW,CAAI,GAAW,EAAE,GAAM;IACzC,OAAO,eAAe,CAAC,MAAM,GAAG,GAAG,EAAE,GAAG,CAAC,CAAA;AAC3C,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,YAAY,CAAC,EACnC,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,eAAe,GAAG,OAAO,eAAe,KAAK,WAAW,CAAA;IAC9D,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,CAAC,eAAe,CAAC,CAAA;IACvE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAC7C,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,WAAW,CAAC,MAAM,EAAE,aAAa,CAAC,CAAA;IAClE,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,WAAW,CAC3C,OAAO,EACP,OAAO,CAAC,SAAS,IAAI,SAAS,CAC/B,CAAA;IACD,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,YAAY;QACnD,oBAAC,aAAa;YACX,KAAK,CAAC,CAAC,CAAC,CACP,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAC/B,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CACZ,oBAAC,cAAc,OAAG,CACnB,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,SAAS,IACR,UAAU,EAAC,UAAU,EACrB,KAAK,EAAE,QAAQ,EACf,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,GAClD;YACF,+BAAM;YAEL,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,CACnB,oBAAC,SAAS,IACR,MAAM,QACN,KAAK,EAAC,OAAO,EACb,KAAK,EAAE,SAAS,EAChB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAElD,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,EAAE,CAAC,CACvD,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG;YAE1B,aAAa;YACb,GAAG,CAAC,IAAI,IAAI,gBAAgB,CAErB,CACZ,CAAC,CACQ,CACb,CAAC,CAAC,CAAC,IAAI;YACP,eAAe,CAAC,CAAC,CAAC,CACjB,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,GAAG,EAAE,CAAC,kBAAkB,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,GAC/C,EAEJ,KAAK,EAAC,8EAA8E,GACpF,CACH,CAAC,CAAC,CAAC,CACF,oBAAC,UAAU,+FAGE,CACd,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,aAGrB;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,OAAO,EAAE,KAAK,IAAI,EAAE;oBAClB,UAAU,CAAC,IAAI,CAAC,CAAA;oBAChB,QAAQ,CAAC,SAAS,CAAC,CAAA;oBACnB,IAAI;wBACF,MAAM,KAAK,CAAC,SAAS,CAAC;4BACpB,eAAe;4BACf,QAAQ;4BACR,SAAS;yBACV,CAAC,CAAA;wBACF,WAAW,EAAE,CAAA;qBACd;oBAAC,OAAO,CAAC,EAAE;wBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;wBAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACX,UAAU,CAAC,KAAK,CAAC,CAAA;qBAClB;gBACH,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC"}

package/esm/CircularView/components/Ruler.d.ts CHANGED Viewed

@@ -1,8 +1,8 @@
 /// <reference types="react" />
 import { Slice } from '../models/slices';
 import { CircularViewModel } from '../models/CircularView';
-declare const CircularRuler: ({ model, slice }: {
+declare const _default: ({ model, slice, }: {
     model: CircularViewModel;
     slice: Slice;
 }) => JSX.Element;
-export default CircularRuler;
+export default _default;

package/esm/CircularView/components/Ruler.js CHANGED Viewed

@@ -34,11 +34,11 @@ function sliceArcPath(slice, radiusPx, startBase, endBase) {
         ...endXY,
     ].join(' ');
 }
-const ElisionRulerArc = observer(({ model, slice }) => {
+const ElisionRulerArc = observer(function ({ model, slice, region, }) {
     const theme = useTheme();
     const { radiusPx: modelRadiusPx } = model;
     const radiusPx = modelRadiusPx + 1;
-    const { endRadians, startRadians, region } = slice;
+    const { endRadians, startRadians } = slice;
     const startXY = polarToCartesian(radiusPx, startRadians);
     const endXY = polarToCartesian(radiusPx, endRadians);
     const widthPx = (endRadians - startRadians) * radiusPx;
@@ -64,7 +64,7 @@ const ElisionRulerArc = observer(({ model, slice }) => {
                 ...endXY,
             ].join(' '), stroke: theme.palette.text.secondary, strokeWidth: 2, strokeDasharray: "2,2", fill: "none" })));
 });
-const RulerLabel = observer(({ view, text, maxWidthPx, radians, radiusPx, title, color, }) => {
+const RulerLabel = observer(function ({ view, text, maxWidthPx, radians, radiusPx, title, color, }) {
     const { classes } = useStyles();
     const textXY = polarToCartesian(radiusPx + 5, radians);
     if (!text) {
@@ -91,15 +91,15 @@ const RulerLabel = observer(({ view, text, maxWidthPx, radians, radiusPx, title,
     // if you get here there is no room for the text at all
     return null;
 });
-const RegionRulerArc = observer(({ model, slice }) => {
+const RegionRulerArc = observer(function ({ model, slice, region, }) {
     const theme = useTheme();
     const { radiusPx } = model;
-    const { region, endRadians, startRadians } = slice;
+    const { endRadians, startRadians } = slice;
     const centerRadians = (endRadians + startRadians) / 2;
     const widthPx = (endRadians - startRadians) * radiusPx;
     const session = getSession(model);
     let color;
-    const assembly = session.assemblyManager.get(slice.region.assemblyName);
+    const assembly = session.assemblyManager.get(region.assemblyName);
     if (assembly) {
         color = assembly.getRefNameColor(region.refName);
     }
@@ -117,16 +117,12 @@ const RegionRulerArc = observer(({ model, slice }) => {
     // TODO: slice flipping
     return (React.createElement(React.Fragment, null,
         React.createElement(RulerLabel, { text: region.refName, view: model, maxWidthPx: widthPx, radians: centerRadians, radiusPx: radiusPx, color: color }),
-        React.createElement("path", { d: sliceArcPath(slice, radiusPx + 1, region.start, region.end), stroke: color, strokeWidth: 2, fill: "none" },
-            React.createElement("title", null, region.refName))));
+        React.createElement("path", { d: sliceArcPath(slice, radiusPx + 1, region.start, region.end), stroke: color, strokeWidth: 2, fill: "none" })));
 });
-const CircularRuler = observer(({ model, slice }) => {
+export default observer(function ({ model, slice, }) {
     if (slice.region.elided) {
-        return (React.createElement(ElisionRulerArc, { key:
-            /* @ts-ignore */
-            assembleLocString(slice.region.regions[0]), model: model, slice: slice }));
+        return (React.createElement(ElisionRulerArc, { key: assembleLocString(slice.region.regions[0]), model: model, region: slice.region, slice: slice }));
     }
-    return (React.createElement(RegionRulerArc, { key: assembleLocString(slice.region), model: model, slice: slice }));
+    return (React.createElement(RegionRulerArc, { key: assembleLocString(slice.region), region: slice.region, model: model, slice: slice }));
 });
-export default CircularRuler;
 //# sourceMappingURL=Ruler.js.map

package/esm/CircularView/components/Ruler.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/esm/CircularView/models/CircularView.d.ts CHANGED Viewed

@@ -1,8 +1,16 @@
+import React from 'react';
 import PluginManager from '@jbrowse/core/PluginManager';
 import { SnapshotOrInstance, Instance } from 'mobx-state-tree';
 import { Region } from '@jbrowse/core/util/types/mst';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import { Region as IRegion } from '@jbrowse/core/util';
+import { MenuItem } from '@jbrowse/core/ui';
+import { SliceRegion } from './slices';
+export interface ExportSvgOptions {
+    rasterizeLayers?: boolean;
+    filename?: string;
+    Wrapper?: React.FC<any>;
+    themeName?: string;
+}
 /**
  * #stateModel CircularView
  * extends `BaseViewModel`
@@ -27,7 +35,9 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
         end: import("mobx-state-tree").ISimpleType<number>;
         reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     } & {
-        assemblyName: import("mobx-state-tree").ISimpleType<string>;
+        assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
+         * #property
+         */
     }, {
         setRefName(newRefName: string): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -43,7 +53,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
 }, {
     width: number;
 } & {
-    menuItems(): import("@jbrowse/core/ui").MenuItem[];
+    menuItems(): MenuItem[];
 } & {
     setDisplayName(name: string): void;
     setWidth(newWidth: number): void;
@@ -56,10 +66,6 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
      * #getter
      */
     readonly width: number;
-    /**
-     * #getter
-     */
-    readonly staticSlices: import("./slices").Slice[];
     /**
      * #getter
      */
@@ -132,17 +138,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
      * this is displayedRegions, post-processed to
      * elide regions that are too small to see reasonably
      */
-    readonly elidedRegions: ({
-        elided: true;
-        widthBp: number;
-        regions: IRegion[];
-    } | {
-        elided: false;
-        widthBp: number;
-        start: number;
-        end: number;
-        refName: string;
-    })[];
+    readonly elidedRegions: SliceRegion[];
     /**
      * #getter
      */
@@ -151,6 +147,11 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
      * #getter
      */
     readonly initialized: boolean;
+} & {
+    /**
+     * #getter
+     */
+    readonly staticSlices: import("./slices").Slice[];
 } & {
     /**
      * #getter
@@ -241,15 +242,18 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
      * #action
      */
     toggleFitToWindowLock(): boolean;
+    /**
+     * #action
+     * creates an svg export and save using FileSaver
+     */
+    exportSvg(opts?: ExportSvgOptions): Promise<void>;
+} & {
+    /**
+     * #method
+     * return the view menu items
+     */
+    menuItems(): MenuItem[];
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export type CircularViewStateModel = ReturnType<typeof stateModelFactory>;
 export type CircularViewModel = Instance<CircularViewStateModel>;
-/**
-PLANS
-- tracks
-- ruler tick marks
-- set viewport scroll from state snapshot
-*/
 export default stateModelFactory;