@jbrowse/plugin-circular-view 2.3.0 → 2.3.2

package/dist/CircularView/components/CircularView.js

@@ -5,21 +5,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
 const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
 const util_1 = require("@jbrowse/core/util");
 const mui_1 = require("tss-react/mui");
-const colors_1 = require("@mui/material/colors");
-// icons
-const ZoomOut_1 = __importDefault(require("@mui/icons-material/ZoomOut"));
-const ZoomIn_1 = __importDefault(require("@mui/icons-material/ZoomIn"));
-const RotateLeft_1 = __importDefault(require("@mui/icons-material/RotateLeft"));
-const RotateRight_1 = __importDefault(require("@mui/icons-material/RotateRight"));
-const LockOpen_1 = __importDefault(require("@mui/icons-material/LockOpen"));
-const Lock_1 = __importDefault(require("@mui/icons-material/Lock"));
-const Icons_1 = require("@jbrowse/core/ui/Icons");
 // locals
 const Ruler_1 = __importDefault(require("./Ruler"));
+const Controls_1 = __importDefault(require("./Controls"));
 const ImportForm_1 = __importDefault(require("./ImportForm"));
 const dragHandleHeight = 3;
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
@@ -38,24 +29,6 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         boxSizing: 'content-box',
         display: 'block',
     },
-    iconButton: {
-        padding: '4px',
-        margin: '0 2px 0 2px',
-    },
-    controls: {
-        overflow: 'hidden',
-        whiteSpace: 'nowrap',
-        position: 'absolute',
-        background: colors_1.grey[200],
-        boxSizing: 'border-box',
-        borderRight: '1px solid #a2a2a2',
-        borderBottom: '1px solid #a2a2a2',
-        left: 0,
-        top: 0,
-    },
-    importFormContainer: {
-        marginBottom: theme.spacing(4),
-    },
 }));
 const Slices = (0, mobx_react_1.observer)(({ model }) => {
     return (react_1.default.createElement(react_1.default.Fragment, null,
@@ -67,64 +40,42 @@ const Slices = (0, mobx_react_1.observer)(({ model }) => {
             return (react_1.default.createElement(display.RenderingComponent, { key: display.id, display: display, view: model }));
         })));
 });
-const Controls = (0, mobx_react_1.observer)(function ({ model, showingFigure, }) {
-    const { classes } = useStyles();
-    return (react_1.default.createElement("div", { className: classes.controls },
-        react_1.default.createElement(material_1.IconButton, { onClick: model.zoomOutButton, className: classes.iconButton, title: model.lockedFitToWindow ? 'unlock to zoom out' : 'zoom out', disabled: !showingFigure || model.atMaxBpPerPx || model.lockedFitToWindow, color: "secondary" },
-            react_1.default.createElement(ZoomOut_1.default, null)),
-        react_1.default.createElement(material_1.IconButton, { onClick: model.zoomInButton, className: classes.iconButton, title: "zoom in", disabled: !showingFigure || model.atMinBpPerPx, color: "secondary" },
-            react_1.default.createElement(ZoomIn_1.default, null)),
-        react_1.default.createElement(material_1.IconButton, { onClick: model.rotateCounterClockwiseButton, className: classes.iconButton, title: "rotate counter-clockwise", disabled: !showingFigure, color: "secondary" },
-            react_1.default.createElement(RotateLeft_1.default, null)),
-        react_1.default.createElement(material_1.IconButton, { onClick: model.rotateClockwiseButton, className: classes.iconButton, title: "rotate clockwise", disabled: !showingFigure, color: "secondary" },
-            react_1.default.createElement(RotateRight_1.default, null)),
-        react_1.default.createElement(material_1.IconButton, { onClick: model.toggleFitToWindowLock, className: classes.iconButton, title: model.lockedFitToWindow
-                ? 'locked model to window size'
-                : 'unlocked model to zoom further', disabled: model.tooSmallToLock, color: "secondary" }, model.lockedFitToWindow ? react_1.default.createElement(Lock_1.default, null) : react_1.default.createElement(LockOpen_1.default, null)),
-        model.hideTrackSelectorButton ? null : (react_1.default.createElement(material_1.IconButton, { onClick: model.activateTrackSelector, title: "Open track selector", "data-testid": "circular_track_select", color: "secondary" },
-            react_1.default.createElement(Icons_1.TrackSelector, null)))));
-});
 const CircularView = (0, mobx_react_1.observer)(({ model }) => {
-    const { classes } = useStyles();
     const initialized = !!model.displayedRegions.length &&
         !!model.figureWidth &&
-        !!model.figureHeight;
+        !!model.figureHeight &&
+        model.initialized;
     const showImportForm = !initialized && !model.disableImportForm;
     const showFigure = initialized && !showImportForm;
-    return (react_1.default.createElement("div", { className: classes.root, style: {
-            width: model.width,
-            height: model.height,
-        }, "data-testid": model.id }, model.error ? (react_1.default.createElement(ui_1.ErrorMessage, { error: model.error })) : (react_1.default.createElement(react_1.default.Fragment, null,
-        showImportForm ? react_1.default.createElement(ImportForm_1.default, { model: model }) : null,
-        react_1.default.createElement(react_1.default.Fragment, null,
-            !showFigure ? null : (react_1.default.createElement("div", { className: classes.scroller, style: {
-                    width: model.width,
-                    height: model.height,
+    return (react_1.default.createElement(react_1.default.Fragment, null, showImportForm || model.error ? (react_1.default.createElement(ImportForm_1.default, { model: model })) : showFigure ? (react_1.default.createElement(CircularViewLoaded, { model: model })) : null));
+});
+const CircularViewLoaded = (0, mobx_react_1.observer)(function ({ model, }) {
+    const { width, height, id, offsetRadians, centerXY, figureWidth, figureHeight, hideVerticalResizeHandle, } = model;
+    const { classes } = useStyles();
+    return (react_1.default.createElement("div", { className: classes.root, style: { width, height }, "data-testid": id },
+        react_1.default.createElement("div", { className: classes.scroller, style: { width, height } },
+            react_1.default.createElement("div", { style: {
+                    transform: [`rotate(${offsetRadians}rad)`].join(' '),
+                    transition: 'transform 0.5s',
+                    transformOrigin: centerXY.map(x => `${x}px`).join(' '),
                 } },
-                react_1.default.createElement("div", { style: {
-                        transform: [`rotate(${model.offsetRadians}rad)`].join(' '),
-                        transition: 'transform 0.5s',
-                        transformOrigin: model.centerXY
-                            .map(x => `${x}px`)
-                            .join(' '),
-                    } },
-                    react_1.default.createElement("svg", { style: {
-                            position: 'absolute',
-                            left: 0,
-                            top: 0,
-                        }, className: classes.sliceRoot, width: `${model.figureWidth}px`, height: `${model.figureHeight}px`, version: "1.1" },
-                        react_1.default.createElement("g", { transform: `translate(${model.centerXY})` },
-                            react_1.default.createElement(Slices, { model: model })))))),
-            react_1.default.createElement(Controls, { model: model, showingFigure: showFigure }),
-            model.hideVerticalResizeHandle ? null : (react_1.default.createElement(ui_1.ResizeHandle, { onDrag: model.resizeHeight, style: {
-                    height: dragHandleHeight,
-                    position: 'absolute',
-                    bottom: 0,
-                    left: 0,
-                    background: '#ccc',
-                    boxSizing: 'border-box',
-                    borderTop: '1px solid #fafafa',
-                } })))))));
+                react_1.default.createElement("svg", { style: {
+                        position: 'absolute',
+                        left: 0,
+                        top: 0,
+                    }, className: classes.sliceRoot, width: figureWidth + 'px', height: figureHeight + 'px', version: "1.1" },
+                    react_1.default.createElement("g", { transform: `translate(${centerXY})` },
+                        react_1.default.createElement(Slices, { model: model }))))),
+        react_1.default.createElement(Controls_1.default, { model: model }),
+        hideVerticalResizeHandle ? null : (react_1.default.createElement(ui_1.ResizeHandle, { onDrag: model.resizeHeight, style: {
+                height: dragHandleHeight,
+                position: 'absolute',
+                bottom: 0,
+                left: 0,
+                background: '#ccc',
+                boxSizing: 'border-box',
+                borderTop: '1px solid #fafafa',
+            } }))));
 });
 exports.default = CircularView;
 //# sourceMappingURL=CircularView.js.map

package/dist/CircularView/components/CircularView.js.map

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package/dist/CircularView/components/Controls.d.ts

@@ -0,0 +1,6 @@
+/// <reference types="react" />
+import { CircularViewModel } from '../models/CircularView';
+declare const Controls: ({ model }: {
+    model: CircularViewModel;
+}) => JSX.Element;
+export default Controls;

package/dist/CircularView/components/Controls.js

@@ -0,0 +1,54 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importDefault(require("react"));
+const mobx_react_1 = require("mobx-react");
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const colors_1 = require("@mui/material/colors");
+// icons
+const ZoomOut_1 = __importDefault(require("@mui/icons-material/ZoomOut"));
+const ZoomIn_1 = __importDefault(require("@mui/icons-material/ZoomIn"));
+const RotateLeft_1 = __importDefault(require("@mui/icons-material/RotateLeft"));
+const RotateRight_1 = __importDefault(require("@mui/icons-material/RotateRight"));
+const LockOpen_1 = __importDefault(require("@mui/icons-material/LockOpen"));
+const Lock_1 = __importDefault(require("@mui/icons-material/Lock"));
+const Icons_1 = require("@jbrowse/core/ui/Icons");
+const useStyles = (0, mui_1.makeStyles)()({
+    iconButton: {
+        padding: '4px',
+        margin: '0 2px 0 2px',
+    },
+    controls: {
+        overflow: 'hidden',
+        whiteSpace: 'nowrap',
+        position: 'absolute',
+        background: colors_1.grey[200],
+        boxSizing: 'border-box',
+        borderRight: '1px solid #a2a2a2',
+        borderBottom: '1px solid #a2a2a2',
+        left: 0,
+        top: 0,
+    },
+});
+const Controls = (0, mobx_react_1.observer)(function ({ model }) {
+    const { classes } = useStyles();
+    return (react_1.default.createElement("div", { className: classes.controls },
+        react_1.default.createElement(material_1.IconButton, { onClick: model.zoomOutButton, className: classes.iconButton, title: model.lockedFitToWindow ? 'unlock to zoom out' : 'zoom out', disabled: model.atMaxBpPerPx || model.lockedFitToWindow, color: "secondary" },
+            react_1.default.createElement(ZoomOut_1.default, null)),
+        react_1.default.createElement(material_1.IconButton, { onClick: model.zoomInButton, className: classes.iconButton, title: "zoom in", disabled: model.atMinBpPerPx, color: "secondary" },
+            react_1.default.createElement(ZoomIn_1.default, null)),
+        react_1.default.createElement(material_1.IconButton, { onClick: model.rotateCounterClockwiseButton, className: classes.iconButton, title: "rotate counter-clockwise", color: "secondary" },
+            react_1.default.createElement(RotateLeft_1.default, null)),
+        react_1.default.createElement(material_1.IconButton, { onClick: model.rotateClockwiseButton, className: classes.iconButton, title: "rotate clockwise", color: "secondary" },
+            react_1.default.createElement(RotateRight_1.default, null)),
+        react_1.default.createElement(material_1.IconButton, { onClick: model.toggleFitToWindowLock, className: classes.iconButton, title: model.lockedFitToWindow
+                ? 'locked model to window size'
+                : 'unlocked model to zoom further', disabled: model.tooSmallToLock, color: "secondary" }, model.lockedFitToWindow ? react_1.default.createElement(Lock_1.default, null) : react_1.default.createElement(LockOpen_1.default, null)),
+        model.hideTrackSelectorButton ? null : (react_1.default.createElement(material_1.IconButton, { onClick: model.activateTrackSelector, title: "Open track selector", "data-testid": "circular_track_select", color: "secondary" },
+            react_1.default.createElement(Icons_1.TrackSelector, null)))));
+});
+exports.default = Controls;
+//# sourceMappingURL=Controls.js.map

package/dist/CircularView/components/Controls.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Controls.js","sourceRoot":"","sources":["../../../src/CircularView/components/Controls.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAA0C;AAC1C,uCAA0C;AAC1C,iDAA2C;AAE3C,QAAQ;AACR,0EAAqD;AACrD,wEAAmD;AACnD,gFAA2D;AAC3D,kFAA6D;AAC7D,4EAAuD;AACvD,oEAA+C;AAC/C,kDAA2E;AAK3E,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,UAAU,EAAE;QACV,OAAO,EAAE,KAAK;QACd,MAAM,EAAE,aAAa;KACtB;IACD,QAAQ,EAAE;QACR,QAAQ,EAAE,QAAQ;QAClB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,UAAU;QACpB,UAAU,EAAE,aAAI,CAAC,GAAG,CAAC;QACrB,SAAS,EAAE,YAAY;QACvB,WAAW,EAAE,mBAAmB;QAChC,YAAY,EAAE,mBAAmB;QACjC,IAAI,EAAE,CAAC;QACP,GAAG,EAAE,CAAC;KACP;CACF,CAAC,CAAA;AAEF,MAAM,QAAQ,GAAG,IAAA,qBAAQ,EAAC,UAAU,EAAE,KAAK,EAAgC;IACzE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,QAAQ;QAC9B,8BAAC,qBAAU,IACT,OAAO,EAAE,KAAK,CAAC,aAAa,EAC5B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAE,KAAK,CAAC,iBAAiB,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,UAAU,EAClE,QAAQ,EAAE,KAAK,CAAC,YAAY,IAAI,KAAK,CAAC,iBAAiB,EACvD,KAAK,EAAC,WAAW;YAEjB,8BAAC,iBAAW,OAAG,CACJ;QAEb,8BAAC,qBAAU,IACT,OAAO,EAAE,KAAK,CAAC,YAAY,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,KAAK,CAAC,YAAY,EAC5B,KAAK,EAAC,WAAW;YAEjB,8BAAC,gBAAU,OAAG,CACH;QAEb,8BAAC,qBAAU,IACT,OAAO,EAAE,KAAK,CAAC,4BAA4B,EAC3C,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,0BAA0B,EAChC,KAAK,EAAC,WAAW;YAEjB,8BAAC,oBAAc,OAAG,CACP;QAEb,8BAAC,qBAAU,IACT,OAAO,EAAE,KAAK,CAAC,qBAAqB,EACpC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;YAEjB,8BAAC,qBAAe,OAAG,CACR;QAEb,8BAAC,qBAAU,IACT,OAAO,EAAE,KAAK,CAAC,qBAAqB,EACpC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EACH,KAAK,CAAC,iBAAiB;gBACrB,CAAC,CAAC,6BAA6B;gBAC/B,CAAC,CAAC,gCAAgC,EAEtC,QAAQ,EAAE,KAAK,CAAC,cAAc,EAC9B,KAAK,EAAC,WAAW,IAEhB,KAAK,CAAC,iBAAiB,CAAC,CAAC,CAAC,8BAAC,cAAQ,OAAG,CAAC,CAAC,CAAC,8BAAC,kBAAY,OAAG,CAC/C;QAEZ,KAAK,CAAC,uBAAuB,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CACtC,8BAAC,qBAAU,IACT,OAAO,EAAE,KAAK,CAAC,qBAAqB,EACpC,KAAK,EAAC,qBAAqB,iBACf,uBAAuB,EACnC,KAAK,EAAC,WAAW;YAEjB,8BAAC,qBAAiB,OAAG,CACV,CACd,CACG,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AACF,kBAAe,QAAQ,CAAA"}

package/dist/CircularView/components/ImportForm.js

@@ -31,17 +31,16 @@ const util_1 = require("@jbrowse/core/util");
 const ui_1 = require("@jbrowse/core/ui");
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     importFormContainer: {
-        marginBottom: theme.spacing(4),
+        padding: theme.spacing(6),
     },
 }));
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
     const { classes } = useStyles();
     const session = (0, util_1.getSession)(model);
-    const { error: modelError } = model;
+    const { error } = model;
     const { assemblyNames, assemblyManager } = session;
     const [selectedAsm, setSelectedAsm] = (0, react_1.useState)(assemblyNames[0]);
-    const [error, setError] = (0, react_1.useState)(modelError);
     const assembly = assemblyManager.get(selectedAsm);
     const assemblyError = assemblyNames.length
         ? assembly === null || assembly === void 0 ? void 0 : assembly.error
@@ -55,11 +54,14 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
         react_1.default.createElement(material_1.Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center" },
             react_1.default.createElement(material_1.Grid, { item: true },
                 react_1.default.createElement(ui_1.AssemblySelector, { onChange: val => {
-                        setError(undefined);
+                        model.setError(undefined);
                         setSelectedAsm(val);
                     }, session: session, selected: selectedAsm })),
             react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(material_1.Button, { disabled: !(regions === null || regions === void 0 ? void 0 : regions.length), onClick: () => model.setDisplayedRegions(regions), variant: "contained", color: "primary" }, regions.length ? 'Open' : 'Loading…')))));
+                react_1.default.createElement(material_1.Button, { disabled: !(regions === null || regions === void 0 ? void 0 : regions.length), onClick: () => {
+                        model.setError(undefined);
+                        model.setDisplayedRegions(regions);
+                    }, variant: "contained", color: "primary" }, regions.length || err ? 'Open' : 'Loading...')))));
 });
 exports.default = ImportForm;
 //# sourceMappingURL=ImportForm.js.map

package/dist/CircularView/components/ImportForm.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/CircularView/components/ImportForm.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAAuD;AACvD,uCAA0C;AAC1C,2CAAqC;AACrC,6CAA+C;AAC/C,yCAAiE;AAEjE,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AAEH,8DAA8D;AAC9D,MAAM,UAAU,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACxD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,aAAa,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IAClD,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAA;IAChE,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,WAAW,CAAC,CAAA;IACjD,MAAM,aAAa,GAAG,aAAa,CAAC,MAAM;QACxC,CAAC,CAAC,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,KAAK;QACjB,CAAC,CAAC,0BAA0B,CAAA;IAC9B,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,KAAI,EAAE,CAAA;IACvC,MAAM,GAAG,GAAG,aAAa,IAAI,KAAK,CAAA;IAElC,OAAO,CACL,8BAAC,oBAAS,IAAC,SAAS,EAAE,OAAO,CAAC,mBAAmB;QAC9C,GAAG,CAAC,CAAC,CAAC,CACL,8BAAC,eAAI,IAAC,SAAS,QAAC,OAAO,EAAE,CAAC,EAAE,cAAc,EAAC,QAAQ,EAAC,UAAU,EAAC,QAAQ;YACrE,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,iBAAY,IAAC,KAAK,EAAE,GAAG,GAAI,CACvB,CACF,CACR,CAAC,CAAC,CAAC,IAAI;QACR,8BAAC,eAAI,IAAC,SAAS,QAAC,OAAO,EAAE,CAAC,EAAE,cAAc,EAAC,QAAQ,EAAC,UAAU,EAAC,QAAQ;YACrE,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,qBAAgB,IACf,QAAQ,EAAE,GAAG,CAAC,EAAE;wBACd,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;wBACzB,cAAc,CAAC,GAAG,CAAC,CAAA;oBACrB,CAAC,EACD,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,WAAW,GACrB,CACG;YAEP,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,iBAAM,IACL,QAAQ,EAAE,CAAC,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,MAAM,CAAA,EAC1B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;wBACzB,KAAK,CAAC,mBAAmB,CAAC,OAAO,CAAC,CAAA;oBACpC,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,IAGd,OAAO,CAAC,MAAM,IAAI,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,YAAY,CACvC,CACJ,CACF,CACG,CACb,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,UAAU,CAAA"}

package/dist/CircularView/models/CircularView.d.ts

@@ -2,6 +2,7 @@ import PluginManager from '@jbrowse/core/PluginManager';
 import { SnapshotOrInstance, Instance } from 'mobx-state-tree';
 import { Region } from '@jbrowse/core/util/types/mst';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import { Region as IRegion } from '@jbrowse/core/util';
 /**
  * #stateModel CircularView
  * extends `BaseViewModel`
@@ -45,15 +46,16 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
     menuItems(): import("@jbrowse/core/ui").MenuItem[];
 } & {
     setDisplayName(name: string): void;
-    setWidth(newWidth: number): void; /**
-     * #property
-     */
-    setMinimized(flag: boolean): void; /**
-     * #property
-     */
+    setWidth(newWidth: number): void;
+    setMinimized(flag: boolean): void;
 } & {
-    width: number;
+    volatileWidth: number | undefined;
+    error: unknown;
 } & {
+    /**
+     * #getter
+     */
+    readonly width: number;
     /**
      * #getter
      */
@@ -130,7 +132,17 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
      * this is displayedRegions, post-processed to
      * elide regions that are too small to see reasonably
      */
-    readonly elidedRegions: any[];
+    readonly elidedRegions: ({
+        elided: true;
+        widthBp: number;
+        regions: IRegion[];
+    } | {
+        elided: false;
+        widthBp: number;
+        start: number;
+        end: number;
+        refName: string;
+    })[];
     /**
      * #getter
      */
@@ -144,8 +156,6 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
      * #getter
      */
     readonly visibleStaticSlices: import("./slices").Slice[];
-} & {
-    error: unknown;
 } & {
     /**
      * #action

package/dist/CircularView/models/CircularView.js

@@ -16,8 +16,8 @@ function stateModelFactory(pluginManager) {
     const minHeight = 40;
     const minWidth = 100;
     const defaultHeight = 400;
-    return mobx_state_tree_1.types.compose(models_1.BaseViewModel, mobx_state_tree_1.types
-        .model('CircularView', {
+    return mobx_state_tree_1.types
+        .compose(models_1.BaseViewModel, mobx_state_tree_1.types.model('CircularView', {
         /**
          * #property
          */
@@ -30,7 +30,7 @@ function stateModelFactory(pluginManager) {
         /**
          * #property
          */
-        bpPerPx: 2000000,
+        bpPerPx: 200,
         /**
          * #property
          */
@@ -74,11 +74,21 @@ function stateModelFactory(pluginManager) {
         minVisibleWidth: 6,
         minimumBlockWidth: 20,
         trackSelectorType: 'hierarchical',
-    })
+    }))
         .volatile(() => ({
-        width: 0,
+        volatileWidth: undefined,
+        error: undefined,
     }))
         .views(self => ({
+        /**
+         * #getter
+         */
+        get width() {
+            if (self.volatileWidth === undefined) {
+                throw new Error('wait for view to be initialized first before accessing width');
+            }
+            return self.volatileWidth;
+        },
         /**
          * #getter
          */
@@ -128,10 +138,7 @@ function stateModelFactory(pluginManager) {
          * #getter
          */
         get centerXY() {
-            return [
-                this.radiusPx + self.paddingPx,
-                this.radiusPx + self.paddingPx,
-            ];
+            return [this.radiusPx + self.paddingPx, this.radiusPx + self.paddingPx];
         },
         /**
          * #getter
@@ -211,7 +218,6 @@ function stateModelFactory(pluginManager) {
          * elide regions that are too small to see reasonably
          */
         get elidedRegions() {
-            // eslint-disable-next-line @typescript-eslint/no-explicit-any
             const visible = [];
             self.displayedRegions.forEach(region => {
                 const widthBp = region.end - region.start;
@@ -219,7 +225,7 @@ function stateModelFactory(pluginManager) {
                 if (widthPx < self.minVisibleWidth) {
                     // too small to see, collapse into a single elision region
                     const lastVisible = visible[visible.length - 1];
-                    if (lastVisible && lastVisible.elided) {
+                    if (lastVisible === null || lastVisible === void 0 ? void 0 : lastVisible.elided) {
                         lastVisible.regions.push({ ...region });
                         lastVisible.widthBp += widthBp;
                     }
@@ -233,15 +239,14 @@ function stateModelFactory(pluginManager) {
                 }
                 else {
                     // big enough to see, display it
-                    visible.push({ ...region, widthBp });
+                    visible.push({ ...region, widthBp, elided: false });
                 }
             });
             // remove any single-region elisions
             for (let i = 0; i < visible.length; i += 1) {
                 const v = visible[i];
                 if (v.elided && v.regions.length === 1) {
-                    delete v.elided;
-                    visible[i] = { ...v, ...v.regions[0] };
+                    visible[i] = { ...v, ...v.regions[0], elided: false };
                 }
             }
             return visible;
@@ -263,7 +268,8 @@ function stateModelFactory(pluginManager) {
          */
         get initialized() {
             const { assemblyManager } = (0, util_1.getSession)(self);
-            return this.assemblyNames.every(a => { var _a; return (_a = assemblyManager.get(a)) === null || _a === void 0 ? void 0 : _a.initialized; });
+            return (self.volatileWidth !== undefined &&
+                this.assemblyNames.every(a => { var _a; return (_a = assemblyManager.get(a)) === null || _a === void 0 ? void 0 : _a.initialized; }));
         },
     }))
         .views(self => ({
@@ -273,17 +279,14 @@ function stateModelFactory(pluginManager) {
         get visibleStaticSlices() {
             return self.staticSlices.filter(s => (0, slices_1.sliceIsVisible)(self, s));
         },
-    }))
-        .volatile(() => ({
-        error: undefined,
     }))
         .actions(self => ({
         /**
          * #action
          */
         setWidth(newWidth) {
-            self.width = Math.max(newWidth, minWidth);
-            return self.width;
+            self.volatileWidth = Math.max(newWidth, minWidth);
+            return self.volatileWidth;
         },
         /**
          * #action
@@ -409,7 +412,6 @@ function stateModelFactory(pluginManager) {
          * #action
          */
         setError(error) {
-            console.error(error);
             self.error = error;
         },
         /**
@@ -469,12 +471,13 @@ function stateModelFactory(pluginManager) {
          * #action
          */
         toggleFitToWindowLock() {
-            // when going unlocked -> locked and circle is cut off, set to the locked minBpPerPx
+            // when going unlocked -> locked and circle is cut off, set to the
+            // locked minBpPerPx
             self.lockedFitToWindow = !self.lockedFitToWindow;
             this.setModelViewWhenAdjust(self.atMinBpPerPx);
             return self.lockedFitToWindow;
         },
-    })));
+    }));
 }
 /**
 PLANS

package/dist/CircularView/models/CircularView.js.map

@@ -1 +1 @@
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