@jbrowse/plugin-circular-view 2.12.0 → 2.12.1

package/dist/BaseChordDisplay/models/model.d.ts

@@ -1,4 +1,5 @@
 import React from 'react';
+import CircularChordRendererType from '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType';
 import RendererType from '@jbrowse/core/pluggableElementTypes/renderers/RendererType';
 import { AnyReactComponentType, Feature } from '@jbrowse/core/util';
 import { ExportSvgOptions } from '../../CircularView/models/model';
@@ -41,8 +42,8 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
             error: unknown;
             message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        onHorizontalScroll?: Function | undefined;
-        blockState?: Record<string, any> | undefined;
+        onHorizontalScroll?: Function;
+        blockState?: Record<string, any>;
     }>;
     readonly DisplayBlurb: React.FC<{
         model: {
@@ -53,7 +54,9 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
             rendererTypeName: string;
             error: unknown;
             message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree" /**
+         * #getter
+         */).IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -66,27 +69,23 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
     readonly adapterConfig: any;
     readonly parentTrack: any;
     renderProps(): any;
-    readonly rendererType: RendererType;
-    readonly DisplayMessageComponent: React.FC<any> | undefined;
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
+    readonly DisplayMessageComponent: undefined | React.FC<any>;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
     regionCannotBeRendered(): null;
 } & {
-    setMessage(arg?: string | undefined): void; /**
-     * #getter
-     * returns a string feature ID if the globally-selected object
-     * is probably a feature
-     */
+    setMessage(arg?: string): void;
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
 } & {
     filled: boolean;
-    reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+    reactElement: React.ReactElement | undefined;
     data: undefined;
     html: string | undefined;
     message: string;
-    renderingComponent: AnyReactComponentType | undefined;
+    renderingComponent: undefined | AnyReactComponentType;
     refNameMap: Record<string, string> | undefined;
 } & {
     /**
@@ -111,7 +110,7 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
     /**
      * #method
      */
-    isCompatibleWithRenderer(renderer: RendererType): boolean;
+    isCompatibleWithRenderer(renderer: RendererType): renderer is CircularChordRendererType;
     /**
      * #getter
      * returns a string feature ID if the globally-selected object

package/dist/BaseChordDisplay/models/renderReaction.js

@@ -3,7 +3,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.renderReactionEffect = exports.renderReactionData = void 0;
+exports.renderReactionData = renderReactionData;
+exports.renderReactionEffect = renderReactionEffect;
 const clone_1 = __importDefault(require("clone"));
 const tracks_1 = require("@jbrowse/core/util/tracks");
 const util_1 = require("@jbrowse/core/util");
@@ -28,7 +29,6 @@ function renderReactionData(self) {
         },
     };
 }
-exports.renderReactionData = renderReactionData;
 async function renderReactionEffect(
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 props, signal, 
@@ -62,4 +62,3 @@ self) {
         renderingComponent: rendererType.ReactComponent,
     };
 }
-exports.renderReactionEffect = renderReactionEffect;

package/dist/CircularView/components/ExportSvgDialog.js

@@ -23,6 +23,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ExportSvgDialog;
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
@@ -77,4 +78,3 @@ function ExportSvgDialog({ model, handleClose, }) {
                     }
                 } }, "Submit"))));
 }
-exports.default = ExportSvgDialog;

package/dist/CircularView/index.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = CircularViewF;
 const react_1 = require("react");
 const ViewType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/ViewType"));
 const model_1 = __importDefault(require("./models/model"));
@@ -37,4 +38,3 @@ function CircularViewF(pluginManager) {
         displayName: 'Circular view',
     }));
 }
-exports.default = CircularViewF;

package/dist/CircularView/models/slices.js

@@ -1,6 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.sliceIsVisible = exports.calculateStaticSlices = exports.Slice = void 0;
+exports.Slice = void 0;
+exports.calculateStaticSlices = calculateStaticSlices;
+exports.sliceIsVisible = sliceIsVisible;
 const util_1 = require("@jbrowse/core/util");
 const viewportVisibleRegion_1 = require("./viewportVisibleRegion");
 class Slice {
@@ -49,9 +51,7 @@ function calculateStaticSlices(self) {
     }
     return slices;
 }
-exports.calculateStaticSlices = calculateStaticSlices;
 function sliceIsVisible(self, slice) {
     const { theta: [visibleThetaMin, visibleThetaMax], } = self.visibleSection;
     return (0, viewportVisibleRegion_1.thetaRangesOverlap)(slice.offsetRadians + self.offsetRadians, slice.radianWidth, visibleThetaMin, visibleThetaMax - visibleThetaMin);
 }
-exports.sliceIsVisible = sliceIsVisible;

package/dist/CircularView/models/viewportVisibleRegion.js

@@ -1,6 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.viewportVisibleSection = exports.thetaRangesOverlap = exports.cartesianToPolar = void 0;
+exports.cartesianToPolar = cartesianToPolar;
+exports.thetaRangesOverlap = thetaRangesOverlap;
+exports.viewportVisibleSection = viewportVisibleSection;
 function findCircleIntersectionX(y, cx, cy, r, resultArray) {
     const d = Math.abs(y - cy);
     if (d > r) {
@@ -43,7 +45,6 @@ function cartesianToPolar(x, y) {
     const theta = cartesianToTheta(x, y);
     return [rho, theta];
 }
-exports.cartesianToPolar = cartesianToPolar;
 const twoPi = 2 * Math.PI;
 function thetaRangesOverlap(r1start, r1length, r2start, r2length) {
     if (r1length <= 0 || r2length <= 0) {
@@ -67,7 +68,6 @@ function thetaRangesOverlap(r1start, r1length, r2start, r2length) {
     r2start += twoPi + twoPi;
     return r1start < r2start + r2length && r1start + r1length > r2start;
 }
-exports.thetaRangesOverlap = thetaRangesOverlap;
 // return which arc range has any part of the circle visible in the viewport
 function viewportVisibleSection(viewSides, circleCenter, circleRadius) {
     let [viewL, viewR, viewT, viewB] = viewSides;
@@ -221,4 +221,3 @@ function viewportVisibleSection(viewSides, circleCenter, circleRadius) {
         theta: [thetaMin, thetaMax],
     };
 }
-exports.viewportVisibleSection = viewportVisibleSection;

package/dist/CircularView/svgcomponents/SVGBackground.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = SVGBackground;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const util_1 = require("@jbrowse/core/util");
@@ -10,4 +11,3 @@ function SVGBackground({ width, height, shift, }) {
     const theme = (0, material_1.useTheme)();
     return (react_1.default.createElement("rect", { width: width + shift * 2, height: height, fill: (0, util_1.stripAlpha)(theme.palette.background.default) }));
 }
-exports.default = SVGBackground;

package/dist/CircularView/svgcomponents/SVGCircularView.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.renderToSvg = void 0;
+exports.renderToSvg = renderToSvg;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const mobx_1 = require("mobx");
@@ -38,4 +38,3 @@ async function renderToSvg(model, opts) {
                     staticSlices.map((slice, i) => (react_1.default.createElement(Ruler_1.default, { key: i, model: model, slice: slice }))),
                     displayResults.map(({ result }, i) => (react_1.default.createElement(react_1.default.Fragment, { key: i }, result))))))), createRootFn);
 }
-exports.renderToSvg = renderToSvg;

package/dist/LaunchCircularView/index.js

@@ -1,5 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = LaunchCircularViewF;
 const mobx_1 = require("mobx");
 function LaunchCircularViewF(pluginManager) {
     pluginManager.addToExtensionPoint('LaunchView-CircularView', 
@@ -19,4 +20,3 @@ function LaunchCircularViewF(pluginManager) {
         tracks.forEach(track => view.showTrack(track));
     });
 }
-exports.default = LaunchCircularViewF;

package/esm/BaseChordDisplay/models/model.d.ts

@@ -1,4 +1,5 @@
 import React from 'react';
+import CircularChordRendererType from '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType';
 import RendererType from '@jbrowse/core/pluggableElementTypes/renderers/RendererType';
 import { AnyReactComponentType, Feature } from '@jbrowse/core/util';
 import { ExportSvgOptions } from '../../CircularView/models/model';
@@ -41,8 +42,8 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
             error: unknown;
             message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        onHorizontalScroll?: Function | undefined;
-        blockState?: Record<string, any> | undefined;
+        onHorizontalScroll?: Function;
+        blockState?: Record<string, any>;
     }>;
     readonly DisplayBlurb: React.FC<{
         model: {
@@ -53,7 +54,9 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
             rendererTypeName: string;
             error: unknown;
             message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree" /**
+         * #getter
+         */).IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -66,27 +69,23 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
     readonly adapterConfig: any;
     readonly parentTrack: any;
     renderProps(): any;
-    readonly rendererType: RendererType;
-    readonly DisplayMessageComponent: React.FC<any> | undefined;
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
+    readonly DisplayMessageComponent: undefined | React.FC<any>;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
     regionCannotBeRendered(): null;
 } & {
-    setMessage(arg?: string | undefined): void; /**
-     * #getter
-     * returns a string feature ID if the globally-selected object
-     * is probably a feature
-     */
+    setMessage(arg?: string): void;
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
 } & {
     filled: boolean;
-    reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+    reactElement: React.ReactElement | undefined;
     data: undefined;
     html: string | undefined;
     message: string;
-    renderingComponent: AnyReactComponentType | undefined;
+    renderingComponent: undefined | AnyReactComponentType;
     refNameMap: Record<string, string> | undefined;
 } & {
     /**
@@ -111,7 +110,7 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
     /**
      * #method
      */
-    isCompatibleWithRenderer(renderer: RendererType): boolean;
+    isCompatibleWithRenderer(renderer: RendererType): renderer is CircularChordRendererType;
     /**
      * #getter
      * returns a string feature ID if the globally-selected object

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-circular-view",
-  "version": "2.12.0",
+  "version": "2.12.1",
   "description": "JBrowse 2 circular view",
   "keywords": [
     "jbrowse",
@@ -57,5 +57,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "935f2602d29abc737bb1f493a922b6218d023ae2"
+  "gitHead": "20f16ae5a56ae5e4806aaa373131e540b0b5b0fd"
 }