@jbrowse/plugin-circular-view 2.11.0 → 2.11.2

package/dist/BaseChordDisplay/models/model.d.ts

@@ -72,7 +72,11 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
     regionCannotBeRendered(): null;
 } & {
-    setMessage(arg?: string | undefined): void;
+    setMessage(arg?: string | undefined): void; /**
+     * #getter
+     * returns a string feature ID if the globally-selected object
+     * is probably a feature
+     */
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;

package/dist/CircularView/components/Ruler.js

@@ -63,7 +63,7 @@ const ElisionRulerArc = (0, mobx_react_1.observer)(function ({ model, slice, reg
                 largeArc,
                 '1',
                 ...endXY,
-            ].join(' '), stroke: theme.palette.text.secondary, strokeWidth: 2, strokeDasharray: "2,2", fill: "none" })));
+            ].join(' '), ...(0, util_1.getStrokeProps)(theme.palette.text.secondary), strokeWidth: 2, strokeDasharray: "2,2", fill: "none" })));
 });
 const RulerLabel = (0, mobx_react_1.observer)(function ({ view, text, maxWidthPx, radians, radiusPx, title, color, }) {
     const { classes } = useStyles();
@@ -73,7 +73,7 @@ const RulerLabel = (0, mobx_react_1.observer)(function ({ view, text, maxWidthPx
     }
     if (text.length * 6.5 < maxWidthPx) {
         // text is rotated parallel to the ruler arc
-        return (react_1.default.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "middle", dominantBaseline: "baseline", transform: `translate(${textXY}) rotate(${(0, util_1.radToDeg)(radians) + 90})`, style: { fill: color } },
+        return (react_1.default.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "middle", dominantBaseline: "baseline", transform: `translate(${textXY}) rotate(${(0, util_1.radToDeg)(radians) + 90})`, ...(0, util_1.getFillProps)(color) },
             text,
             react_1.default.createElement("title", null, title || text)));
     }
@@ -81,11 +81,11 @@ const RulerLabel = (0, mobx_react_1.observer)(function ({ view, text, maxWidthPx
         // text is rotated perpendicular to the ruler arc
         const overallRotation = (0, util_1.radToDeg)(radians + view.offsetRadians - Math.PI / 2);
         if (overallRotation >= 180) {
-            return (react_1.default.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "start", dominantBaseline: "middle", transform: `translate(${textXY}) rotate(${(0, util_1.radToDeg)(radians)})`, style: { fill: color } },
+            return (react_1.default.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "start", dominantBaseline: "middle", transform: `translate(${textXY}) rotate(${(0, util_1.radToDeg)(radians)})`, fill: color },
                 text,
                 react_1.default.createElement("title", null, title || text)));
         }
-        return (react_1.default.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "end", dominantBaseline: "middle", transform: `translate(${textXY}) rotate(${(0, util_1.radToDeg)(radians) + 180})`, style: { fill: color } },
+        return (react_1.default.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "end", dominantBaseline: "middle", transform: `translate(${textXY}) rotate(${(0, util_1.radToDeg)(radians) + 180})`, fill: color },
             text,
             react_1.default.createElement("title", null, title || text)));
     }
@@ -121,9 +121,6 @@ const RegionRulerArc = (0, mobx_react_1.observer)(function ({ model, slice, regi
         react_1.default.createElement("path", { d: sliceArcPath(slice, radiusPx + 1, region.start, region.end), stroke: color, strokeWidth: 2, fill: "none" })));
 });
 const Ruler = (0, mobx_react_1.observer)(function ({ model, slice, }) {
-    if (slice.region.elided) {
-        return (react_1.default.createElement(ElisionRulerArc, { key: (0, util_1.assembleLocString)(slice.region.regions[0]), model: model, region: slice.region, slice: slice }));
-    }
-    return (react_1.default.createElement(RegionRulerArc, { key: (0, util_1.assembleLocString)(slice.region), region: slice.region, model: model, slice: slice }));
+    return slice.region.elided ? (react_1.default.createElement(ElisionRulerArc, { key: (0, util_1.assembleLocString)(slice.region.regions[0]), model: model, region: slice.region, slice: slice })) : (react_1.default.createElement(RegionRulerArc, { key: (0, util_1.assembleLocString)(slice.region), region: slice.region, model: model, slice: slice }));
 });
 exports.default = Ruler;

package/dist/CircularView/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function CircularViewF(pluginManager: PluginManager): void;

package/dist/CircularView/index.js

@@ -29,11 +29,12 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = require("react");
 const ViewType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/ViewType"));
 const model_1 = __importDefault(require("./models/model"));
-exports.default = (pluginManager) => {
+function CircularViewF(pluginManager) {
     pluginManager.addViewType(() => new ViewType_1.default({
         ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/CircularView')))),
         stateModel: (0, model_1.default)(pluginManager),
         name: 'CircularView',
         displayName: 'Circular view',
     }));
-};
+}
+exports.default = CircularViewF;

package/dist/LaunchCircularView/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function LaunchCircularViewF(pluginManager: PluginManager): void;

package/dist/LaunchCircularView/index.js

@@ -1,7 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 const mobx_1 = require("mobx");
-exports.default = (pluginManager) => {
+function LaunchCircularViewF(pluginManager) {
     pluginManager.addToExtensionPoint('LaunchView-CircularView', 
     // @ts-expect-error
     async ({ session, assembly, tracks = [], }) => {
@@ -18,4 +18,5 @@ exports.default = (pluginManager) => {
         view.setDisplayedRegions(asm.regions || []);
         tracks.forEach(track => view.showTrack(track));
     });
-};
+}
+exports.default = LaunchCircularViewF;

package/esm/BaseChordDisplay/models/model.d.ts

@@ -72,7 +72,11 @@ export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
     regionCannotBeRendered(): null;
 } & {
-    setMessage(arg?: string | undefined): void;
+    setMessage(arg?: string | undefined): void; /**
+     * #getter
+     * returns a string feature ID if the globally-selected object
+     * is probably a feature
+     */
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;

package/esm/CircularView/components/Ruler.js

@@ -1,6 +1,6 @@
 import React from 'react';
 import { observer } from 'mobx-react';
-import { getSession, polarToCartesian, radToDeg, assembleLocString, } from '@jbrowse/core/util';
+import { getSession, polarToCartesian, radToDeg, assembleLocString, getStrokeProps, getFillProps, } from '@jbrowse/core/util';
 import { makeContrasting } from '@jbrowse/core/util/color';
 import { useTheme } from '@mui/material/styles';
 import { makeStyles } from 'tss-react/mui';
@@ -58,7 +58,7 @@ const ElisionRulerArc = observer(function ({ model, slice, region, }) {
                 largeArc,
                 '1',
                 ...endXY,
-            ].join(' '), stroke: theme.palette.text.secondary, strokeWidth: 2, strokeDasharray: "2,2", fill: "none" })));
+            ].join(' '), ...getStrokeProps(theme.palette.text.secondary), strokeWidth: 2, strokeDasharray: "2,2", fill: "none" })));
 });
 const RulerLabel = observer(function ({ view, text, maxWidthPx, radians, radiusPx, title, color, }) {
     const { classes } = useStyles();
@@ -68,7 +68,7 @@ const RulerLabel = observer(function ({ view, text, maxWidthPx, radians, radiusP
     }
     if (text.length * 6.5 < maxWidthPx) {
         // text is rotated parallel to the ruler arc
-        return (React.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "middle", dominantBaseline: "baseline", transform: `translate(${textXY}) rotate(${radToDeg(radians) + 90})`, style: { fill: color } },
+        return (React.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "middle", dominantBaseline: "baseline", transform: `translate(${textXY}) rotate(${radToDeg(radians) + 90})`, ...getFillProps(color) },
             text,
             React.createElement("title", null, title || text)));
     }
@@ -76,11 +76,11 @@ const RulerLabel = observer(function ({ view, text, maxWidthPx, radians, radiusP
         // text is rotated perpendicular to the ruler arc
         const overallRotation = radToDeg(radians + view.offsetRadians - Math.PI / 2);
         if (overallRotation >= 180) {
-            return (React.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "start", dominantBaseline: "middle", transform: `translate(${textXY}) rotate(${radToDeg(radians)})`, style: { fill: color } },
+            return (React.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "start", dominantBaseline: "middle", transform: `translate(${textXY}) rotate(${radToDeg(radians)})`, fill: color },
                 text,
                 React.createElement("title", null, title || text)));
         }
-        return (React.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "end", dominantBaseline: "middle", transform: `translate(${textXY}) rotate(${radToDeg(radians) + 180})`, style: { fill: color } },
+        return (React.createElement("text", { x: 0, y: 0, className: classes.rulerLabel, textAnchor: "end", dominantBaseline: "middle", transform: `translate(${textXY}) rotate(${radToDeg(radians) + 180})`, fill: color },
             text,
             React.createElement("title", null, title || text)));
     }
@@ -116,9 +116,6 @@ const RegionRulerArc = observer(function ({ model, slice, region, }) {
         React.createElement("path", { d: sliceArcPath(slice, radiusPx + 1, region.start, region.end), stroke: color, strokeWidth: 2, fill: "none" })));
 });
 const Ruler = observer(function ({ model, slice, }) {
-    if (slice.region.elided) {
-        return (React.createElement(ElisionRulerArc, { key: assembleLocString(slice.region.regions[0]), model: model, region: slice.region, slice: slice }));
-    }
-    return (React.createElement(RegionRulerArc, { key: assembleLocString(slice.region), region: slice.region, model: model, slice: slice }));
+    return slice.region.elided ? (React.createElement(ElisionRulerArc, { key: assembleLocString(slice.region.regions[0]), model: model, region: slice.region, slice: slice })) : (React.createElement(RegionRulerArc, { key: assembleLocString(slice.region), region: slice.region, model: model, slice: slice }));
 });
 export default Ruler;

package/esm/CircularView/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function CircularViewF(pluginManager: PluginManager): void;

package/esm/CircularView/index.js

@@ -1,11 +1,11 @@
 import { lazy } from 'react';
 import ViewType from '@jbrowse/core/pluggableElementTypes/ViewType';
 import stateModelFactory from './models/model';
-export default (pluginManager) => {
+export default function CircularViewF(pluginManager) {
     pluginManager.addViewType(() => new ViewType({
         ReactComponent: lazy(() => import('./components/CircularView')),
         stateModel: stateModelFactory(pluginManager),
         name: 'CircularView',
         displayName: 'Circular view',
     }));
-};
+}

package/esm/LaunchCircularView/index.d.ts

@@ -1,3 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
-export default _default;
+export default function LaunchCircularViewF(pluginManager: PluginManager): void;

package/esm/LaunchCircularView/index.js

@@ -1,5 +1,5 @@
 import { when } from 'mobx';
-export default (pluginManager) => {
+export default function LaunchCircularViewF(pluginManager) {
     pluginManager.addToExtensionPoint('LaunchView-CircularView', 
     // @ts-expect-error
     async ({ session, assembly, tracks = [], }) => {
@@ -16,4 +16,4 @@ export default (pluginManager) => {
         view.setDisplayedRegions(asm.regions || []);
         tracks.forEach(track => view.showTrack(track));
     });
-};
+}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-circular-view",
-  "version": "2.11.0",
+  "version": "2.11.2",
   "description": "JBrowse 2 circular view",
   "keywords": [
     "jbrowse",
@@ -57,5 +57,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "3d43a820b9274a6160aa4dc15616147f390d9094"
+  "gitHead": "511048cb6965f0bf624c96de244e7fd47fce17d6"
 }