@jbrowse/plugin-circular-view 2.1.4 → 2.1.6

package/src/CircularView/components/Ruler.js

@@ -1,222 +0,0 @@
-import React from 'react'
-import { observer } from 'mobx-react'
-import {
-  getSession,
-  polarToCartesian,
-  radToDeg,
-  assembleLocString,
-} from '@jbrowse/core/util'
-import { makeContrasting } from '@jbrowse/core/util/color'
-import { useTheme } from '@mui/material/styles'
-import { makeStyles } from 'tss-react/mui'
-
-const useStyles = makeStyles()({
-  rulerLabel: {
-    fontSize: '0.8rem',
-    fontWeight: 500,
-    lineHeight: 1.6,
-    letterSpacing: '0.0075em',
-  },
-})
-
-function sliceArcPath(slice, radiusPx, startBase, endBase) {
-  // A rx ry x-axis-rotation large-arc-flag sweep-flag x y
-  if (slice.flipped) {
-    ;[startBase, endBase] = [endBase, startBase]
-  }
-  const startXY = slice.bpToXY(startBase, radiusPx)
-  const endXY = slice.bpToXY(endBase, radiusPx)
-  const largeArc =
-    Math.abs(endBase - startBase) / slice.bpPerRadian > Math.PI ? '1' : '0'
-  const sweepFlag = '1'
-  return [
-    'M',
-    ...startXY,
-    'A',
-    radiusPx,
-    radiusPx,
-    '0',
-    largeArc,
-    sweepFlag,
-    ...endXY,
-  ].join(' ')
-}
-
-const ElisionRulerArc = observer(({ model, slice }) => {
-  const theme = useTheme()
-  const { radiusPx: modelRadiusPx } = model
-  const radiusPx = modelRadiusPx + 1
-  const { endRadians, startRadians, region } = slice
-  const startXY = polarToCartesian(radiusPx, startRadians)
-  const endXY = polarToCartesian(radiusPx, endRadians)
-  const widthPx = (endRadians - startRadians) * radiusPx
-  const largeArc = endRadians - startRadians > Math.PI ? '1' : '0'
-  // TODO: draw the elision
-  const centerRadians = (endRadians + startRadians) / 2
-  const regionCountString = `[${Number(
-    region.regions.length,
-  ).toLocaleString()}]`
-  return (
-    <>
-      <RulerLabel
-        text={regionCountString}
-        view={model}
-        maxWidthPx={widthPx}
-        radians={centerRadians}
-        radiusPx={radiusPx}
-        title={`${Number(region.regions.length).toLocaleString()} more regions`}
-        color={theme.palette.text.primary}
-      />
-      <path
-        d={[
-          'M',
-          ...startXY,
-          'A',
-          radiusPx,
-          radiusPx,
-          '0',
-          largeArc,
-          '1',
-          ...endXY,
-        ].join(' ')}
-        stroke={theme.palette.text.secondary}
-        strokeWidth={2}
-        strokeDasharray="2,2"
-        fill="none"
-      />
-    </>
-  )
-})
-
-const RulerLabel = observer(
-  ({ view, text, maxWidthPx, radians, radiusPx, title, color }) => {
-    const { classes } = useStyles()
-    const textXY = polarToCartesian(radiusPx + 5, radians)
-    if (!text) {
-      return null
-    }
-
-    if (text.length * 6.5 < maxWidthPx) {
-      // text is rotated parallel to the ruler arc
-      return (
-        <text
-          x={0}
-          y={0}
-          className={classes.rulerLabel}
-          textAnchor="middle"
-          dominantBaseline="baseline"
-          transform={`translate(${textXY}) rotate(${radToDeg(radians) + 90})`}
-          style={{ fill: color }}
-        >
-          {text}
-          <title>{title || text}</title>
-        </text>
-      )
-    }
-    if (maxWidthPx > 4) {
-      // text is rotated perpendicular to the ruler arc
-      const overallRotation = radToDeg(
-        radians + view.offsetRadians - Math.PI / 2,
-      )
-      if (overallRotation >= 180) {
-        return (
-          <text
-            x={0}
-            y={0}
-            className={classes.rulerLabel}
-            textAnchor="start"
-            dominantBaseline="middle"
-            transform={`translate(${textXY}) rotate(${radToDeg(radians)})`}
-            style={{ fill: color }}
-          >
-            {text}
-            <title>{title || text}</title>
-          </text>
-        )
-      }
-      return (
-        <text
-          x={0}
-          y={0}
-          className={classes.rulerLabel}
-          textAnchor="end"
-          dominantBaseline="middle"
-          transform={`translate(${textXY}) rotate(${radToDeg(radians) + 180})`}
-          style={{ fill: color }}
-        >
-          {text}
-          <title>{title || text}</title>
-        </text>
-      )
-    }
-
-    // if you get here there is no room for the text at all
-    return null
-  },
-)
-
-const RegionRulerArc = observer(({ model, slice }) => {
-  const theme = useTheme()
-  const { radiusPx } = model
-  const { region, endRadians, startRadians } = slice
-  const centerRadians = (endRadians + startRadians) / 2
-  const widthPx = (endRadians - startRadians) * radiusPx
-  const session = getSession(model)
-  let color
-  const assembly = session.assemblyManager.get(slice.region.assemblyName)
-  if (assembly) {
-    color = assembly.getRefNameColor(region.refName)
-  }
-  if (color) {
-    try {
-      color = makeContrasting(color, theme.palette.background.paper)
-    } catch (error) {
-      color = theme.palette.text.primary
-    }
-  } else {
-    color = theme.palette.text.primary
-  }
-
-  // TODO: slice flipping
-  return (
-    <>
-      <RulerLabel
-        text={region.refName}
-        view={model}
-        maxWidthPx={widthPx}
-        radians={centerRadians}
-        radiusPx={radiusPx}
-        color={color}
-      />
-      <path
-        d={sliceArcPath(slice, radiusPx + 1, region.start, region.end)}
-        stroke={color}
-        strokeWidth={2}
-        fill="none"
-      >
-        <title>{region.refName}</title>
-      </path>
-    </>
-  )
-})
-
-const CircularRuler = observer(function Ruler({ model, slice }) {
-  if (slice.region.elided) {
-    return (
-      <ElisionRulerArc
-        key={assembleLocString(slice.region.regions[0])}
-        model={model}
-        slice={slice}
-      />
-    )
-  }
-  return (
-    <RegionRulerArc
-      key={assembleLocString(slice.region)}
-      model={model}
-      slice={slice}
-    />
-  )
-})
-
-export default CircularRuler