npm - @jbrowse/plugin-circular-view - Versions diffs - 2.1.3 → 2.1.5 - Mend

@jbrowse/plugin-circular-view 2.1.3 → 2.1.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (64) hide show

package/esm/CircularView/components/Ruler.d.ts CHANGED Viewed

@@ -1,5 +1,8 @@
+/// <reference types="react" />
+import { Slice } from '../models/slices';
+import { CircularViewModel } from '../models/CircularView';
+declare const CircularRuler: ({ model, slice }: {
+    model: CircularViewModel;
+    slice: Slice;
+}) => JSX.Element;
 export default CircularRuler;
-declare function CircularRuler({ model, slice }: {
-    model: any;
-    slice: any;
-}): JSX.Element;

package/esm/CircularView/components/Ruler.js CHANGED Viewed

@@ -45,9 +45,13 @@ const ElisionRulerArc = observer(({ model, slice }) => {
     const largeArc = endRadians - startRadians > Math.PI ? '1' : '0';
     // TODO: draw the elision
     const centerRadians = (endRadians + startRadians) / 2;
-    const regionCountString = `[${Number(region.regions.length).toLocaleString()}]`;
+    const regionCountString = `[${Number(
+    // @ts-ignore
+    region.regions.length).toLocaleString()}]`;
     return (React.createElement(React.Fragment, null,
-        React.createElement(RulerLabel, { text: regionCountString, view: model, maxWidthPx: widthPx, radians: centerRadians, radiusPx: radiusPx, title: `${Number(region.regions.length).toLocaleString()} more regions`, color: theme.palette.text.primary }),
+        React.createElement(RulerLabel, { text: regionCountString, view: model, maxWidthPx: widthPx, radians: centerRadians, radiusPx: radiusPx, title: `${Number(
+            // @ts-ignore
+            region.regions.length).toLocaleString()} more regions`, color: theme.palette.text.primary }),
         React.createElement("path", { d: [
                 'M',
                 ...startXY,
@@ -60,7 +64,7 @@ const ElisionRulerArc = observer(({ model, slice }) => {
                 ...endXY,
             ].join(' '), stroke: theme.palette.text.secondary, strokeWidth: 2, strokeDasharray: "2,2", fill: "none" })));
 });
-const RulerLabel = observer(({ view, text, maxWidthPx, radians, radiusPx, title, color }) => {
+const RulerLabel = observer(({ view, text, maxWidthPx, radians, radiusPx, title, color, }) => {
     const { classes } = useStyles();
     const textXY = polarToCartesian(radiusPx + 5, radians);
     if (!text) {
@@ -116,9 +120,11 @@ const RegionRulerArc = observer(({ model, slice }) => {
         React.createElement("path", { d: sliceArcPath(slice, radiusPx + 1, region.start, region.end), stroke: color, strokeWidth: 2, fill: "none" },
             React.createElement("title", null, region.refName))));
 });
-const CircularRuler = observer(function Ruler({ model, slice }) {
+const CircularRuler = observer(({ model, slice }) => {
     if (slice.region.elided) {
-        return (React.createElement(ElisionRulerArc, { key: assembleLocString(slice.region.regions[0]), model: model, slice: slice }));
+        return (React.createElement(ElisionRulerArc, { key:
+            /* @ts-ignore */
+            assembleLocString(slice.region.regions[0]), model: model, slice: slice }));
     }
     return (React.createElement(RegionRulerArc, { key: assembleLocString(slice.region), model: model, slice: slice }));
 });

package/esm/CircularView/components/Ruler.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/esm/CircularView/models/CircularView.d.ts CHANGED Viewed

@@ -45,10 +45,9 @@ export default function CircularView(pluginManager: PluginManager): import("mobx
     width: number;
 } & {
     readonly staticSlices: import("./slices").Slice[];
-    readonly visibleStaticSlices: import("./slices").Slice[];
     readonly visibleSection: {
-        rho: number[];
-        theta: number[];
+        rho: [number, number];
+        theta: [number, number];
     };
     readonly circumferencePx: number;
     readonly radiusPx: number;
@@ -62,12 +61,14 @@ export default function CircularView(pluginManager: PluginManager): import("mobx
     readonly atMaxBpPerPx: boolean;
     readonly atMinBpPerPx: boolean;
     readonly tooSmallToLock: boolean;
-    readonly figureDimensions: number[];
+    readonly figureDimensions: [number, number];
     readonly figureWidth: number;
     readonly figureHeight: number;
     readonly elidedRegions: any[];
     readonly assemblyNames: string[];
     readonly initialized: boolean;
+} & {
+    readonly visibleStaticSlices: import("./slices").Slice[];
 } & {
     error: unknown;
 } & {

package/esm/CircularView/models/CircularView.js CHANGED Viewed

@@ -39,9 +39,6 @@ export default function CircularView(pluginManager) {
         get staticSlices() {
             return calculateStaticSlices(self);
         },
-        get visibleStaticSlices() {
-            return this.staticSlices.filter(sliceIsVisible.bind(this, self));
-        },
         get visibleSection() {
             return viewportVisibleSection([
                 self.scrollX,
@@ -165,6 +162,11 @@ export default function CircularView(pluginManager) {
             const { assemblyManager } = getSession(self);
             return this.assemblyNames.every(a => { var _a; return (_a = assemblyManager.get(a)) === null || _a === void 0 ? void 0 : _a.initialized; });
         },
+    }))
+        .views(self => ({
+        get visibleStaticSlices() {
+            return self.staticSlices.filter(s => sliceIsVisible(self, s));
+        },
     }))
         .volatile(() => ({
         error: undefined,

package/esm/CircularView/models/CircularView.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/CircularView/models/slices.d.ts CHANGED Viewed

@@ -23,5 +23,10 @@ export declare class Slice {
     };
 }
 declare function calculateStaticSlices(self: any): Slice[];
-declare function sliceIsVisible(self: any, slice: Slice): boolean;
+declare function sliceIsVisible(self: {
+    offsetRadians: number;
+    visibleSection: {
+        theta: [number, number];
+    };
+}, slice: Slice): boolean;
 export { calculateStaticSlices, sliceIsVisible };

package/esm/CircularView/models/slices.js CHANGED Viewed

@@ -42,11 +42,8 @@ function calculateStaticSlices(self) {
     }
     return slices;
 }
-// eslint-disable-next-line @typescript-eslint/no-explicit-any
 function sliceIsVisible(self, slice) {
-    const {
-    // rho: visibleRhoRange,
-    theta: [visibleThetaMin, visibleThetaMax], } = self.visibleSection;
+    const { theta: [visibleThetaMin, visibleThetaMax], } = self.visibleSection;
     return thetaRangesOverlap(slice.offsetRadians + self.offsetRadians, slice.radianWidth, visibleThetaMin, visibleThetaMax - visibleThetaMin);
 }
 export { calculateStaticSlices, sliceIsVisible };

package/esm/CircularView/models/slices.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/CircularView/models/viewportVisibleRegion.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 export declare function cartesianToPolar(x: number, y: number): number[];
 export declare function thetaRangesOverlap(r1start: number, r1length: number, r2start: number, r2length: number): boolean;
 export declare function viewportVisibleSection(viewSides: [number, number, number, number], circleCenter: [number, number], circleRadius: number): {
-    rho: number[];
-    theta: number[];
+    rho: [number, number];
+    theta: [number, number];
 };

package/esm/CircularView/models/viewportVisibleRegion.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"viewportVisibleRegion.js","sourceRoot":"","sources":["../../../src/CircularView/models/viewportVisibleRegion.ts"],"names":[],"mappings":"AAAA,SAAS,uBAAuB,CAC9B,CAAS,EACT,EAAU,EACV,EAAU,EACV,CAAS,EACT,WAA+B;IAE/B,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC,CAAA;IAC1B,IAAI,CAAC,GAAG,CAAC,EAAE;QACT,OAAM;KACP;IACD,IAAI,CAAC,KAAK,CAAC,EAAE;QACX,WAAW,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAA;KAC1B;IACD,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;IACzC,WAAW,CAAC,IAAI,CAAC,CAAC,EAAE,GAAG,QAAQ,EAAE,CAAC,CAAC,CAAC,CAAA;IACpC,WAAW,CAAC,IAAI,CAAC,CAAC,EAAE,GAAG,QAAQ,EAAE,CAAC,CAAC,CAAC,CAAA;AACtC,CAAC;AAED,SAAS,uBAAuB,CAC9B,CAAS,EACT,EAAU,EACV,EAAU,EACV,CAAS,EACT,WAA+B;IAE/B,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC,CAAA;IAC1B,IAAI,CAAC,GAAG,CAAC,EAAE;QACT,OAAM;KACP;IACD,IAAI,CAAC,KAAK,CAAC,EAAE;QACX,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAA;KAC1B;IACD,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;IACzC,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAA;IACpC,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAA;AACtC,CAAC;AAED,SAAS,gBAAgB,CAAC,CAAS,EAAE,CAAS;IAC5C,IAAI,KAAK,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,EAAE,CAAC,CAAA;IAC5D,IAAI,CAAC,GAAG,CAAC,EAAE;QACT,IAAI,CAAC,IAAI,CAAC,EAAE;YACV,KAAK,IAAI,IAAI,CAAC,EAAE,CAAA;SACjB;aAAM;YACL,KAAK,IAAI,IAAI,CAAC,EAAE,CAAA;SACjB;KACF;IACD,OAAO,KAAK,CAAA;AACd,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,CAAS,EAAE,CAAS;IACnD,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;IACpC,IAAI,GAAG,KAAK,CAAC,EAAE;QACb,OAAO,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;KACd;IACD,MAAM,KAAK,GAAG,gBAAgB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;IACpC,OAAO,CAAC,GAAG,EAAE,KAAK,CAAC,CAAA;AACrB,CAAC;AAED,MAAM,KAAK,GAAG,CAAC,GAAG,IAAI,CAAC,EAAE,CAAA;AACzB,MAAM,UAAU,kBAAkB,CAChC,OAAe,EACf,QAAgB,EAChB,OAAe,EACf,QAAgB;IAEhB,IAAI,QAAQ,IAAI,CAAC,IAAI,QAAQ,IAAI,CAAC,EAAE;QAClC,OAAO,KAAK,CAAA;KACb;IACD,IAAI,QAAQ,GAAG,MAAM,IAAI,KAAK,IAAI,QAAQ,GAAG,MAAM,IAAI,KAAK,EAAE;QAC5D,OAAO,IAAI,CAAA;KACZ;IAED,0CAA0C;IAC1C,OAAO,GAAG,CAAC,CAAC,CAAC,OAAO,GAAG,KAAK,CAAC,GAAG,KAAK,CAAC,GAAG,KAAK,CAAC,GAAG,KAAK,CAAA;IACvD,OAAO,GAAG,CAAC,CAAC,CAAC,OAAO,GAAG,KAAK,CAAC,GAAG,KAAK,CAAC,GAAG,KAAK,CAAC,GAAG,KAAK,CAAA;IAEvD,IAAI,OAAO,GAAG,OAAO,GAAG,QAAQ,IAAI,OAAO,GAAG,QAAQ,GAAG,OAAO,EAAE;QAChE,OAAO,IAAI,CAAA;KACZ;IAED,mCAAmC;IACnC,OAAO,IAAI,KAAK,CAAA;IAChB,IAAI,OAAO,GAAG,OAAO,GAAG,QAAQ,IAAI,OAAO,GAAG,QAAQ,GAAG,OAAO,EAAE;QAChE,OAAO,IAAI,CAAA;KACZ;IAED,oCAAoC;IACpC,OAAO,IAAI,KAAK,GAAG,KAAK,CAAA;IACxB,OAAO,OAAO,GAAG,OAAO,GAAG,QAAQ,IAAI,OAAO,GAAG,QAAQ,GAAG,OAAO,CAAA;AACrE,CAAC;AAED,4EAA4E;AAC5E,MAAM,UAAU,sBAAsB,CACpC,SAA2C,EAC3C,YAA8B,EAC9B,YAAoB;IAEpB,IAAI,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,CAAC,GAAG,SAAS,CAAA;IAC5C,MAAM,CAAC,EAAE,EAAE,EAAE,CAAC,GAAG,YAAY,CAAA;IAE7B,kDAAkD;IAClD,KAAK,IAAI,EAAE,CAAA;IACX,KAAK,IAAI,EAAE,CAAA;IACX,KAAK,IAAI,EAAE,CAAA;IACX,KAAK,IAAI,EAAE,CAAA;IAEX,MAAM,sBAAsB,GAC1B,KAAK,GAAG,CAAC,IAAI,KAAK,GAAG,CAAC,IAAI,KAAK,GAAG,CAAC,IAAI,KAAK,GAAG,CAAC,CAAA;IAElD,IAAI,sBAAsB,EAAE;QAC1B,MAAM,QAAQ,GAAG;YACf,CAAC,KAAK,EAAE,KAAK,CAAC;YACd,CAAC,KAAK,EAAE,KAAK,CAAC;YACd,CAAC,KAAK,EAAE,KAAK,CAAC;YACd,CAAC,KAAK,EAAE,KAAK,CAAC;SACf,CAAA;QACD,IAAI,MAAM,GAAG,CAAC,QAAQ,CAAA;QACtB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YAC3C,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;YAC1B,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;YACpC,IAAI,GAAG,GAAG,MAAM,EAAE;gBAChB,MAAM,GAAG,GAAG,CAAA;aACb;SACF;QACD,OAAO;YACL,GAAG,EAAE,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,YAAY,EAAE,MAAM,CAAC,CAAqB;YAC5D,KAAK,EAAE,CAAC,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,EAAE,CAAqB;SAC5C,CAAA;KACF;IACD,2CAA2C;IAC3C,+CAA+C;IAC/C,+CAA+C;IAC/C,+CAA+C;IAC/C,4CAA4C;IAE5C,0CAA0C;IAC1C,4BAA4B;IAC5B,IAAI;IAEJ,4CAA4C;IAC5C,kCAAkC;IAClC,0BAA0B;IAC1B,mCAAmC;IACnC,IAAI;IACJ,0DAA0D;IAE1D,8EAA8E;IAC9E,8EAA8E;IAC9E,8EAA8E;IAC9E,8EAA8E;IAE9E,0EAA0E;IAC1E,uCAAuC;IAEvC,2CAA2C;IAC3C,iDAAiD;IACjD,0CAA0C;IAC1C,2EAA2E;IAC3E,uCAAuC;IACvC,qBAAqB;IACrB,gCAAgC;IAChC,gCAAgC;IAChC,gCAAgC;IAChC,gCAAgC;IAChC,MAAM;IAEN,sDAAsD;IACtD,IAAI;IAEJ,sEAAsE;IAEtE,4EAA4E;IAC5E,4EAA4E;IAC5E,4EAA4E;IAC5E,4EAA4E;IAE5E,+BAA+B;IAC/B,8BAA8B;IAC9B,8BAA8B;IAC9B,8BAA8B;IAC9B,4BAA4B;IAE5B,0DAA0D;IAC1D,oCAAoC;IACpC,wCAAwC;IACxC,2CAA2C;IAC3C,8DAA8D;IAC9D,2CAA2C;IAC3C,mGAAmG;IACnG,IAAI;IAEJ,6EAA6E;IAC7E,uDAAuD;IAEvD,oFAAoF;IACpF,uCAAuC;IACvC,MAAM,QAAQ,GAAuB;QACnC,CAAC,KAAK,EAAE,KAAK,CAAC;QACd,CAAC,KAAK,EAAE,KAAK,CAAC;QACd,CAAC,KAAK,EAAE,KAAK,CAAC;QACd,CAAC,KAAK,EAAE,KAAK,CAAC;KACf,CAAA;IACD,uBAAuB,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,EAAE,YAAY,EAAE,QAAQ,CAAC,CAAA;IAC5D,uBAAuB,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,EAAE,YAAY,EAAE,QAAQ,CAAC,CAAA;IAC5D,uBAAuB,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,EAAE,YAAY,EAAE,QAAQ,CAAC,CAAA;IAC5D,uBAAuB,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,EAAE,YAAY,EAAE,QAAQ,CAAC,CAAA;IAE5D,qFAAqF;IACrF,IAAI,CAAC,KAAK,GAAG,YAAY,E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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-circular-view",
-  "version": "2.1.3",
+  "version": "2.1.5",
   "description": "JBrowse 2 circular view",
   "keywords": [
     "jbrowse",
@@ -55,5 +55,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "ebd548ceb52adb36cf6ab437082b5b5feac1338e"
+  "gitHead": "bc5253ecdddeceeb999fffebf6dc6cf5f444e1c9"
 }

package/src/BaseChordDisplay/components/{DisplayError.js → DisplayError.tsx} RENAMED Viewed

@@ -1,24 +1,18 @@
 import React from 'react'
 import { observer } from 'mobx-react'
-import { makeStyles } from 'tss-react/mui'
-const useStyles = makeStyles()({
-  errorMessage: {},
-  errorBackground: {},
-  errorText: {},
-})
-// 'repeating-linear-gradient(45deg, transparent, transparent 5px, rgba(255,255,255,.5) 5px, rgba(255,255,255,.5) 10px)',
 const DisplayError = observer(
   ({
-    model: {
+    model,
+  }: {
+    model: { renderProps: { radius: number }; error: unknown }
+  }) => {
+    const {
       renderProps: { radius },
       error,
-    },
-  }) => {
-    const { classes } = useStyles()
+    } = model
     return (
-      <g className={classes.errorMessage}>
+      <g>
         <defs>
           <pattern
             id="diagonalHatch"
@@ -36,22 +30,9 @@ const DisplayError = observer(
             />
           </pattern>
         </defs>
-        <circle
-          className={classes.errorBackground}
-          cx="0"
-          cy="0"
-          r={radius}
-          fill="#ffb4b4"
-        />
-        <circle
-          className={classes.errorPattern}
-          cx="0"
-          cy="0"
-          r={radius}
-          fill="url(#diagonalHatch)"
-        />
+        <circle cx="0" cy="0" r={radius} fill="#ffb4b4" />
+        <circle cx="0" cy="0" r={radius} fill="url(#diagonalHatch)" />
         <text
-          className={classes.errorText}
           x="0"
           y="0"
           transform="rotate(90 0 0)"

package/src/BaseChordDisplay/components/{RpcRenderedSvgGroup.js → RpcRenderedSvgGroup.tsx} RENAMED Viewed

@@ -4,10 +4,22 @@ import { observer } from 'mobx-react'
 import { hydrate, unmountComponentAtNode } from 'react-dom'
 import { rIC } from '@jbrowse/core/util'
-function RpcRenderedSvgGroup({ model }) {
+function RpcRenderedSvgGroup({
+  model,
+}: {
+  model: {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    data: any
+    html: string
+    filled: boolean
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    renderingComponent: React.FC<any>
+    renderProps: Function
+  }
+}) {
   const { data, html, filled, renderingComponent } = model
-  const ssrContainerNode = useRef(null)
+  const ssrContainerNode = useRef<SVGGElement>(null)
   useEffect(() => {
     const domNode = ssrContainerNode.current

package/src/BaseChordDisplay/models/BaseChordDisplayModel.ts CHANGED Viewed

@@ -1,3 +1,4 @@
+import React from 'react'
 import { getConf } from '@jbrowse/core/configuration'
 import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes/models'
 import CircularChordRendererType from '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType'
@@ -16,8 +17,7 @@ import {
 } from '@jbrowse/core/util/tracks'
 import { Region } from '@jbrowse/core/util/types'
 import { getParent, isAlive, types, getEnv } from 'mobx-state-tree'
-import React from 'react'
-import renderReactionFactory from './renderReaction'
+import { renderReactionData, renderReactionEffect } from './renderReaction'
 import { CircularViewModel } from '../../CircularView/models/CircularView'
 export const BaseChordDisplayModel = types
@@ -185,54 +185,51 @@ export const BaseChordDisplayModel = types
       self.refNameMap = refNameMap
     },
   }))
-  .actions(self => {
-    const { pluginManager } = getEnv(self)
-    const { renderReactionData, renderReactionEffect } =
-      pluginManager.jbrequire(renderReactionFactory)
-    return {
-      afterAttach() {
-        makeAbortableReaction(
-          self,
-          renderReactionData,
-          renderReactionEffect,
-          {
-            name: `${self.type} ${self.id} rendering`,
-            // delay: self.renderDelay || 300,
-            fireImmediately: true,
-          },
-          self.renderStarted,
-          self.renderSuccess,
-          self.renderError,
-        )
-        makeAbortableReaction(
-          self,
-          () => ({
-            assemblyNames: getTrackAssemblyNames(self.parentTrack) as string[],
-            // eslint-disable-next-line @typescript-eslint/no-explicit-any
-            adapter: getConf(getParent<any>(self, 2), 'adapter'),
-            assemblyManager: getSession(self).assemblyManager,
-          }),
+  .actions(self => ({
+    afterAttach() {
+      makeAbortableReaction(
+        self,
+        renderReactionData,
+        // @ts-ignore
+        renderReactionEffect,
+        {
+          name: `${self.type} ${self.id} rendering`,
+          // delay: self.renderDelay || 300,
+          fireImmediately: true,
+        },
+        self.renderStarted,
+        self.renderSuccess,
+        self.renderError,
+      )
+      makeAbortableReaction(
+        self,
+        () => ({
+          assemblyNames: getTrackAssemblyNames(self.parentTrack) as string[],
           // eslint-disable-next-line @typescript-eslint/no-explicit-any
-          async ({ assemblyNames, adapter, assemblyManager }: any, signal) => {
-            return assemblyManager.getRefNameMapForAdapter(
-              adapter,
-              assemblyNames[0],
-              { signal, sessionId: getRpcSessionId(self) },
-            )
-          },
-          {
-            name: `${self.type} ${self.id} getting refNames`,
-            fireImmediately: true,
-          },
-          () => {},
-          refNameMap => {
-            self.setRefNameMap(refNameMap)
-          },
-          error => {
-            console.error(error)
-            self.setError(error)
-          },
-        )
-      },
-    }
-  })
+          adapter: getConf(getParent<any>(self, 2), 'adapter'),
+          assemblyManager: getSession(self).assemblyManager,
+        }),
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        async ({ assemblyNames, adapter, assemblyManager }: any, signal) => {
+          return assemblyManager.getRefNameMapForAdapter(
+            adapter,
+            assemblyNames[0],
+            { signal, sessionId: getRpcSessionId(self) },
+          )
+        },
+        {
+          name: `${self.type} ${self.id} getting refNames`,
+          fireImmediately: true,
+        },
+        () => {},
+        refNameMap => {
+          self.setRefNameMap(refNameMap)
+        },
+        error => {
+          console.error(error)
+          self.setError(error)
+        },
+      )
+    },
+  }))

package/src/BaseChordDisplay/models/renderReaction.ts ADDED Viewed

@@ -0,0 +1,72 @@
+import { getRpcSessionId } from '@jbrowse/core/util/tracks'
+import { getSession, getContainingView } from '@jbrowse/core/util'
+// eslint-disable-next-line @typescript-eslint/no-explicit-any
+export function renderReactionData(self: any) {
+  const view = getContainingView(self)
+  const { rendererType } = self
+  const { rpcManager } = getSession(view)
+  return {
+    rendererType,
+    rpcManager,
+    renderProps: self.renderProps(),
+    renderArgs: {
+      assemblyName: view.displayedRegions[0]?.assemblyName,
+      adapterConfig: JSON.parse(JSON.stringify(self.adapterConfig)),
+      rendererType: rendererType.name,
+      regions: JSON.parse(JSON.stringify(view.displayedRegions)),
+      blockDefinitions: self.blockDefinitions,
+      sessionId: getRpcSessionId(self),
+      timeout: 1000000,
+    },
+  }
+}
+export async function renderReactionEffect(
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any
+  props: any,
+  signal: AbortSignal,
+  // eslint-disable-next-line @typescript-eslint/no-explicit-any
+  self: any,
+) {
+  if (!props) {
+    throw new Error('cannot render with no props')
+  }
+  const {
+    rendererType,
+    rpcManager,
+    cannotBeRenderedReason,
+    renderArgs,
+    renderProps,
+  } = props
+  if (cannotBeRenderedReason) {
+    return { message: cannotBeRenderedReason }
+  }
+  // don't try to render 0 or NaN radius or no regions
+  if (
+    !props.renderProps.radius ||
+    !props.renderArgs.regions ||
+    !props.renderArgs.regions.length
+  ) {
+    return { message: 'Skipping render' }
+  }
+  // check renderertype compatibility
+  if (!self.isCompatibleWithRenderer(rendererType)) {
+    throw new Error(
+      `renderer ${rendererType.name} is not compatible with this display type`,
+    )
+  }
+  const { html, ...data } = await rendererType.renderInClient(rpcManager, {
+    ...renderArgs,
+    ...renderProps,
+    signal,
+  })
+  return { html, data, renderingComponent: rendererType.ReactComponent }
+}