@jbrowse/plugin-circular-view 1.7.3 → 1.7.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (17) hide show
  1. package/dist/BaseChordDisplay/components/BaseChordDisplay.js +5 -5
  2. package/dist/BaseChordDisplay/components/DisplayError.js +2 -2
  3. package/dist/BaseChordDisplay/components/Loading.js +3 -3
  4. package/dist/BaseChordDisplay/components/RpcRenderedSvgGroup.js +3 -3
  5. package/dist/BaseChordDisplay/index.js +1 -1
  6. package/dist/BaseChordDisplay/models/BaseChordDisplayModel.js +6 -6
  7. package/dist/BaseChordDisplay/models/renderReaction.js +6 -6
  8. package/dist/CircularView/components/CircularView.js +23 -23
  9. package/dist/CircularView/components/ImportForm.js +14 -14
  10. package/dist/CircularView/components/Ruler.js +17 -17
  11. package/dist/CircularView/models/CircularView.js +5 -5
  12. package/dist/CircularView/models/slices.js +10 -10
  13. package/dist/CircularView/models/slices.test.js +1 -1
  14. package/dist/CircularView/models/viewportVisibleRegion.js +5 -5
  15. package/dist/CircularView/models/viewportVisibleRegion.test.js +4 -4
  16. package/dist/index.js +14 -14
  17. package/package.json +3 -2
package/dist/BaseChordDisplay/components/BaseChordDisplay.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _Loading = _interopRequireDefault(require("./Loading"));
11
11
 
@@ -20,9 +20,9 @@ var _default = function _default(_ref) {
20
20
  var _lib$mobxReact = lib['mobx-react'],
21
21
  observer = _lib$mobxReact.observer,
22
22
  MobxPropTypes = _lib$mobxReact.PropTypes;
23
- var Loading = load(_Loading["default"]);
24
- var DisplayError = load(_DisplayError["default"]);
25
- var RpcRenderedSvgGroup = load(_RpcRenderedSvgGroup["default"]); // eslint-disable-next-line @typescript-eslint/no-explicit-any
23
+ var Loading = load(_Loading.default);
24
+ var DisplayError = load(_DisplayError.default);
25
+ var RpcRenderedSvgGroup = load(_RpcRenderedSvgGroup.default); // eslint-disable-next-line @typescript-eslint/no-explicit-any
26
26
 
27
27
  function BaseChordDisplay(_ref2) {
28
28
  var display = _ref2.display;
@@ -50,4 +50,4 @@ var _default = function _default(_ref) {
50
50
  return observer(BaseChordDisplay);
51
51
  };
52
52
 
53
- exports["default"] = _default;
53
+ exports.default = _default;
package/dist/BaseChordDisplay/components/DisplayError.js CHANGED
@@ -3,7 +3,7 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports["default"] = void 0;
6
+ exports.default = void 0;
7
7
 
8
8
  var _default = function _default(_ref) {
9
9
  var jbrequire = _ref.jbrequire;
@@ -67,4 +67,4 @@ var _default = function _default(_ref) {
67
67
  return DisplayError;
68
68
  };
69
69
 
70
- exports["default"] = _default;
70
+ exports.default = _default;
package/dist/BaseChordDisplay/components/Loading.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
11
11
 
@@ -63,7 +63,7 @@ var _default = function _default(pluginManager) {
63
63
  var classes = useStyles(); // only show the loading message after 400ms to prevent excessive flickering
64
64
 
65
65
  var _useState = useState(false),
66
- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
66
+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
67
67
  shown = _useState2[0],
68
68
  setShown = _useState2[1];
69
69
 
@@ -119,4 +119,4 @@ var _default = function _default(pluginManager) {
119
119
  return Loading;
120
120
  };
121
121
 
122
- exports["default"] = _default;
122
+ exports.default = _default;
package/dist/BaseChordDisplay/components/RpcRenderedSvgGroup.js CHANGED
@@ -5,13 +5,13 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
11
11
 
12
12
  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
13
13
 
14
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
14
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
15
15
 
16
16
  var _default = function _default(_ref) {
17
17
  var jbrequire = _ref.jbrequire;
@@ -93,4 +93,4 @@ var _default = function _default(_ref) {
93
93
  return observer(RpcRenderedSvgGroup);
94
94
  };
95
95
 
96
- exports["default"] = _default;
96
+ exports.default = _default;
package/dist/BaseChordDisplay/index.js CHANGED
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
8
8
  Object.defineProperty(exports, "BaseChordDisplayComponentFactory", {
9
9
  enumerable: true,
10
10
  get: function get() {
11
- return _BaseChordDisplay["default"];
11
+ return _BaseChordDisplay.default;
12
12
  }
13
13
  });
14
14
  Object.defineProperty(exports, "BaseChordDisplayModel", {
package/dist/BaseChordDisplay/models/BaseChordDisplayModel.js CHANGED
@@ -31,12 +31,12 @@ var _renderReaction = _interopRequireDefault(require("./renderReaction"));
31
31
 
32
32
  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
33
33
 
34
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
34
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
35
35
 
36
36
  var BaseChordDisplayModel = _mobxStateTree.types.compose('BaseChordDisplay', _models.BaseDisplay, _mobxStateTree.types.model({
37
37
  bezierRadiusRatio: 0.1,
38
38
  assemblyName: _mobxStateTree.types.maybe(_mobxStateTree.types.string)
39
- }))["volatile"](function () {
39
+ })).volatile(function () {
40
40
  return {
41
41
  // NOTE: all this volatile stuff has to be filled in at once
42
42
  // so that it stays consistent
@@ -123,7 +123,7 @@ var BaseChordDisplayModel = _mobxStateTree.types.compose('BaseChordDisplay', _mo
123
123
  },
124
124
 
125
125
  isCompatibleWithRenderer: function isCompatibleWithRenderer(renderer) {
126
- return !!(renderer instanceof _CircularChordRendererType["default"]);
126
+ return !!(renderer instanceof _CircularChordRendererType.default);
127
127
  },
128
128
 
129
129
  /**
@@ -201,7 +201,7 @@ var BaseChordDisplayModel = _mobxStateTree.types.compose('BaseChordDisplay', _mo
201
201
  var _getEnv3 = (0, _mobxStateTree.getEnv)(self),
202
202
  pluginManager = _getEnv3.pluginManager;
203
203
 
204
- var _pluginManager$jbrequ = pluginManager.jbrequire(_renderReaction["default"]),
204
+ var _pluginManager$jbrequ = pluginManager.jbrequire(_renderReaction.default),
205
205
  renderReactionData = _pluginManager$jbrequ.renderReactionData,
206
206
  renderReactionEffect = _pluginManager$jbrequ.renderReactionEffect;
207
207
 
@@ -222,9 +222,9 @@ var BaseChordDisplayModel = _mobxStateTree.types.compose('BaseChordDisplay', _mo
222
222
  /*#__PURE__*/
223
223
  // eslint-disable-next-line @typescript-eslint/no-explicit-any
224
224
  function () {
225
- var _ref3 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(_ref2, signal) {
225
+ var _ref3 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(_ref2, signal) {
226
226
  var assemblyNames, adapter, assemblyManager;
227
- return _regenerator["default"].wrap(function _callee$(_context) {
227
+ return _regenerator.default.wrap(function _callee$(_context) {
228
228
  while (1) {
229
229
  switch (_context.prev = _context.next) {
230
230
  case 0:
package/dist/BaseChordDisplay/models/renderReaction.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
@@ -19,7 +19,7 @@ var _excluded = ["html"];
19
19
 
20
20
  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
21
21
 
22
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
22
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
23
23
 
24
24
  var _default = function _default(_ref) {
25
25
  var jbrequire = _ref.jbrequire;
@@ -63,10 +63,10 @@ var _default = function _default(_ref) {
63
63
  }
64
64
 
65
65
  function _renderReactionEffect() {
66
- _renderReactionEffect = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(props, signal, self) {
66
+ _renderReactionEffect = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(props, signal, self) {
67
67
  var rendererType, rpcManager, cannotBeRenderedReason, renderArgs, renderProps, _yield$rendererType$r, html, data;
68
68
 
69
- return _regenerator["default"].wrap(function _callee$(_context) {
69
+ return _regenerator.default.wrap(function _callee$(_context) {
70
70
  while (1) {
71
71
  switch (_context.prev = _context.next) {
72
72
  case 0:
@@ -116,7 +116,7 @@ var _default = function _default(_ref) {
116
116
  case 11:
117
117
  _yield$rendererType$r = _context.sent;
118
118
  html = _yield$rendererType$r.html;
119
- data = (0, _objectWithoutProperties2["default"])(_yield$rendererType$r, _excluded);
119
+ data = (0, _objectWithoutProperties2.default)(_yield$rendererType$r, _excluded);
120
120
  return _context.abrupt("return", {
121
121
  html: html,
122
122
  data: data,
@@ -139,4 +139,4 @@ var _default = function _default(_ref) {
139
139
  };
140
140
  };
141
141
 
142
- exports["default"] = _default;
142
+ exports.default = _default;
package/dist/CircularView/components/CircularView.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _react = _interopRequireDefault(require("react"));
11
11
 
@@ -79,15 +79,15 @@ var useStyles = (0, _core.makeStyles)(function (theme) {
79
79
  });
80
80
  var Slices = (0, _mobxReact.observer)(function (_ref) {
81
81
  var model = _ref.model;
82
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, model.staticSlices.map(function (slice) {
83
- return /*#__PURE__*/_react["default"].createElement(_Ruler["default"], {
82
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, model.staticSlices.map(function (slice) {
83
+ return /*#__PURE__*/_react.default.createElement(_Ruler.default, {
84
84
  key: (0, _util.assembleLocString)(slice.region.elided ? slice.region.regions[0] : slice.region),
85
85
  model: model,
86
86
  slice: slice
87
87
  });
88
88
  }), model.tracks.map(function (track) {
89
89
  var display = track.displays[0];
90
- return /*#__PURE__*/_react["default"].createElement(display.RenderingComponent, {
90
+ return /*#__PURE__*/_react.default.createElement(display.RenderingComponent, {
91
91
  key: display.id,
92
92
  display: display,
93
93
  view: model
@@ -98,44 +98,44 @@ var Controls = (0, _mobxReact.observer)(function (_ref2) {
98
98
  var model = _ref2.model,
99
99
  showingFigure = _ref2.showingFigure;
100
100
  var classes = useStyles();
101
- return /*#__PURE__*/_react["default"].createElement("div", {
101
+ return /*#__PURE__*/_react.default.createElement("div", {
102
102
  className: classes.controls
103
- }, /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
103
+ }, /*#__PURE__*/_react.default.createElement(_core.IconButton, {
104
104
  onClick: model.zoomOutButton,
105
105
  className: classes.iconButton,
106
106
  title: model.lockedFitToWindow ? 'unlock to zoom out' : 'zoom out',
107
107
  disabled: !showingFigure || model.atMaxBpPerPx || model.lockedFitToWindow,
108
108
  color: "secondary"
109
- }, /*#__PURE__*/_react["default"].createElement(_ZoomOut["default"], null)), /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
109
+ }, /*#__PURE__*/_react.default.createElement(_ZoomOut.default, null)), /*#__PURE__*/_react.default.createElement(_core.IconButton, {
110
110
  onClick: model.zoomInButton,
111
111
  className: classes.iconButton,
112
112
  title: "zoom in",
113
113
  disabled: !showingFigure || model.atMinBpPerPx,
114
114
  color: "secondary"
115
- }, /*#__PURE__*/_react["default"].createElement(_ZoomIn["default"], null)), /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
115
+ }, /*#__PURE__*/_react.default.createElement(_ZoomIn.default, null)), /*#__PURE__*/_react.default.createElement(_core.IconButton, {
116
116
  onClick: model.rotateCounterClockwiseButton,
117
117
  className: classes.iconButton,
118
118
  title: "rotate counter-clockwise",
119
119
  disabled: !showingFigure,
120
120
  color: "secondary"
121
- }, /*#__PURE__*/_react["default"].createElement(_RotateLeft["default"], null)), /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
121
+ }, /*#__PURE__*/_react.default.createElement(_RotateLeft.default, null)), /*#__PURE__*/_react.default.createElement(_core.IconButton, {
122
122
  onClick: model.rotateClockwiseButton,
123
123
  className: classes.iconButton,
124
124
  title: "rotate clockwise",
125
125
  disabled: !showingFigure,
126
126
  color: "secondary"
127
- }, /*#__PURE__*/_react["default"].createElement(_RotateRight["default"], null)), /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
127
+ }, /*#__PURE__*/_react.default.createElement(_RotateRight.default, null)), /*#__PURE__*/_react.default.createElement(_core.IconButton, {
128
128
  onClick: model.toggleFitToWindowLock,
129
129
  className: classes.iconButton,
130
130
  title: model.lockedFitToWindow ? 'locked model to window size' : 'unlocked model to zoom further',
131
131
  disabled: model.tooSmallToLock,
132
132
  color: "secondary"
133
- }, model.lockedFitToWindow ? /*#__PURE__*/_react["default"].createElement(_LockOutlined["default"], null) : /*#__PURE__*/_react["default"].createElement(_LockOpen["default"], null)), model.hideTrackSelectorButton ? null : /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
133
+ }, model.lockedFitToWindow ? /*#__PURE__*/_react.default.createElement(_LockOutlined.default, null) : /*#__PURE__*/_react.default.createElement(_LockOpen.default, null)), model.hideTrackSelectorButton ? null : /*#__PURE__*/_react.default.createElement(_core.IconButton, {
134
134
  onClick: model.activateTrackSelector,
135
135
  title: "Open track selector",
136
136
  "data-testid": "circular_track_select",
137
137
  color: "secondary"
138
- }, /*#__PURE__*/_react["default"].createElement(_Icons.TrackSelector, null)));
138
+ }, /*#__PURE__*/_react.default.createElement(_Icons.TrackSelector, null)));
139
139
  });
140
140
  var CircularView = (0, _mobxReact.observer)(function (_ref3) {
141
141
  var model = _ref3.model;
@@ -143,24 +143,24 @@ var CircularView = (0, _mobxReact.observer)(function (_ref3) {
143
143
  var initialized = !!model.displayedRegions.length && model.figureWidth && model.figureHeight;
144
144
  var showImportForm = !initialized && !model.disableImportForm;
145
145
  var showFigure = initialized && !showImportForm;
146
- return /*#__PURE__*/_react["default"].createElement("div", {
146
+ return /*#__PURE__*/_react.default.createElement("div", {
147
147
  className: classes.root,
148
148
  style: {
149
149
  width: model.width,
150
150
  height: model.height
151
151
  },
152
152
  "data-testid": model.id
153
- }, model.error ? /*#__PURE__*/_react["default"].createElement(_ui.ErrorMessage, {
153
+ }, model.error ? /*#__PURE__*/_react.default.createElement(_ui.ErrorMessage, {
154
154
  error: model.error
155
- }) : /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, showImportForm ? /*#__PURE__*/_react["default"].createElement(_ImportForm["default"], {
155
+ }) : /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, showImportForm ? /*#__PURE__*/_react.default.createElement(_ImportForm.default, {
156
156
  model: model
157
- }) : null, /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, !showFigure ? null : /*#__PURE__*/_react["default"].createElement("div", {
157
+ }) : null, /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, !showFigure ? null : /*#__PURE__*/_react.default.createElement("div", {
158
158
  className: classes.scroller,
159
159
  style: {
160
160
  width: model.width,
161
161
  height: model.height
162
162
  }
163
- }, /*#__PURE__*/_react["default"].createElement("div", {
163
+ }, /*#__PURE__*/_react.default.createElement("div", {
164
164
  className: classes.rotator,
165
165
  style: {
166
166
  transform: ["rotate(".concat(model.offsetRadians, "rad)")].join(' '),
@@ -169,7 +169,7 @@ var CircularView = (0, _mobxReact.observer)(function (_ref3) {
169
169
  return "".concat(x, "px");
170
170
  }).join(' ')
171
171
  }
172
- }, /*#__PURE__*/_react["default"].createElement("svg", {
172
+ }, /*#__PURE__*/_react.default.createElement("svg", {
173
173
  style: {
174
174
  position: 'absolute',
175
175
  left: 0,
@@ -179,14 +179,14 @@ var CircularView = (0, _mobxReact.observer)(function (_ref3) {
179
179
  width: "".concat(model.figureWidth, "px"),
180
180
  height: "".concat(model.figureHeight, "px"),
181
181
  version: "1.1"
182
- }, /*#__PURE__*/_react["default"].createElement("g", {
182
+ }, /*#__PURE__*/_react.default.createElement("g", {
183
183
  transform: "translate(".concat(model.centerXY, ")")
184
- }, /*#__PURE__*/_react["default"].createElement(Slices, {
184
+ }, /*#__PURE__*/_react.default.createElement(Slices, {
185
185
  model: model
186
- }))))), /*#__PURE__*/_react["default"].createElement(Controls, {
186
+ }))))), /*#__PURE__*/_react.default.createElement(Controls, {
187
187
  model: model,
188
188
  showingFigure: showFigure
189
- }), model.hideVerticalResizeHandle ? null : /*#__PURE__*/_react["default"].createElement(_ui.ResizeHandle, {
189
+ }), model.hideVerticalResizeHandle ? null : /*#__PURE__*/_react.default.createElement(_ui.ResizeHandle, {
190
190
  onDrag: model.resizeHeight,
191
191
  style: {
192
192
  height: dragHandleHeight,
@@ -200,4 +200,4 @@ var CircularView = (0, _mobxReact.observer)(function (_ref3) {
200
200
  }))));
201
201
  });
202
202
  var _default = CircularView;
203
- exports["default"] = _default;
203
+ exports.default = _default;
package/dist/CircularView/components/ImportForm.js CHANGED
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports["default"] = void 0;
10
+ exports.default = void 0;
11
11
 
12
12
  var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
13
13
 
@@ -25,7 +25,7 @@ var _AssemblySelector = _interopRequireDefault(require("@jbrowse/core/ui/Assembl
25
25
 
26
26
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
27
27
 
28
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
28
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
29
29
 
30
30
  var useStyles = (0, _core.makeStyles)(function (theme) {
31
31
  return {
@@ -44,12 +44,12 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
44
44
  assemblyManager = session.assemblyManager;
45
45
 
46
46
  var _useState = (0, _react.useState)(assemblyNames[0]),
47
- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
47
+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
48
48
  selectedAsm = _useState2[0],
49
49
  setSelectedAsm = _useState2[1];
50
50
 
51
51
  var _useState3 = (0, _react.useState)(modelError),
52
- _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
52
+ _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
53
53
  error = _useState4[0],
54
54
  setError = _useState4[1];
55
55
 
@@ -57,34 +57,34 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
57
57
  var assemblyError = assemblyNames.length ? assembly === null || assembly === void 0 ? void 0 : assembly.error : 'No configured assemblies';
58
58
  var regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
59
59
  var err = assemblyError || error;
60
- return /*#__PURE__*/_react["default"].createElement(_core.Container, {
60
+ return /*#__PURE__*/_react.default.createElement(_core.Container, {
61
61
  className: classes.importFormContainer
62
- }, err ? /*#__PURE__*/_react["default"].createElement(_core.Grid, {
62
+ }, err ? /*#__PURE__*/_react.default.createElement(_core.Grid, {
63
63
  container: true,
64
64
  spacing: 1,
65
65
  justifyContent: "center",
66
66
  alignItems: "center"
67
- }, /*#__PURE__*/_react["default"].createElement(_core.Grid, {
67
+ }, /*#__PURE__*/_react.default.createElement(_core.Grid, {
68
68
  item: true
69
- }, /*#__PURE__*/_react["default"].createElement(_ErrorMessage["default"], {
69
+ }, /*#__PURE__*/_react.default.createElement(_ErrorMessage.default, {
70
70
  error: err
71
- }))) : null, /*#__PURE__*/_react["default"].createElement(_core.Grid, {
71
+ }))) : null, /*#__PURE__*/_react.default.createElement(_core.Grid, {
72
72
  container: true,
73
73
  spacing: 1,
74
74
  justifyContent: "center",
75
75
  alignItems: "center"
76
- }, /*#__PURE__*/_react["default"].createElement(_core.Grid, {
76
+ }, /*#__PURE__*/_react.default.createElement(_core.Grid, {
77
77
  item: true
78
- }, /*#__PURE__*/_react["default"].createElement(_AssemblySelector["default"], {
78
+ }, /*#__PURE__*/_react.default.createElement(_AssemblySelector.default, {
79
79
  onChange: function onChange(val) {
80
80
  setError(undefined);
81
81
  setSelectedAsm(val);
82
82
  },
83
83
  session: session,
84
84
  selected: selectedAsm
85
- })), /*#__PURE__*/_react["default"].createElement(_core.Grid, {
85
+ })), /*#__PURE__*/_react.default.createElement(_core.Grid, {
86
86
  item: true
87
- }, /*#__PURE__*/_react["default"].createElement(_core.Button, {
87
+ }, /*#__PURE__*/_react.default.createElement(_core.Button, {
88
88
  disabled: !(regions !== null && regions !== void 0 && regions.length),
89
89
  onClick: function onClick() {
90
90
  return model.setDisplayedRegions(regions);
@@ -94,4 +94,4 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
94
94
  }, regions.length ? 'Open' : 'Loading…'))));
95
95
  });
96
96
  var _default = ImportForm;
97
- exports["default"] = _default;
97
+ exports.default = _default;
package/dist/CircularView/components/Ruler.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
11
11
 
@@ -41,7 +41,7 @@ function sliceArcPath(slice, radiusPx, startBase, endBase) {
41
41
  var endXY = slice.bpToXY(endBase, radiusPx);
42
42
  var largeArc = Math.abs(endBase - startBase) / slice.bpPerRadian > Math.PI ? '1' : '0';
43
43
  var sweepFlag = '1';
44
- return ['M'].concat((0, _toConsumableArray2["default"])(startXY), ['A', radiusPx, radiusPx, '0', largeArc, sweepFlag], (0, _toConsumableArray2["default"])(endXY)).join(' ');
44
+ return ['M'].concat((0, _toConsumableArray2.default)(startXY), ['A', radiusPx, radiusPx, '0', largeArc, sweepFlag], (0, _toConsumableArray2.default)(endXY)).join(' ');
45
45
  }
46
46
 
47
47
  var ElisionRulerArc = (0, _mobxReact.observer)(function (_ref2) {
@@ -60,7 +60,7 @@ var ElisionRulerArc = (0, _mobxReact.observer)(function (_ref2) {
60
60
 
61
61
  var centerRadians = (endRadians + startRadians) / 2;
62
62
  var regionCountString = "[".concat(Number(region.regions.length).toLocaleString(), "]");
63
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(RulerLabel, {
63
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(RulerLabel, {
64
64
  text: regionCountString,
65
65
  view: model,
66
66
  maxWidthPx: widthPx,
@@ -68,8 +68,8 @@ var ElisionRulerArc = (0, _mobxReact.observer)(function (_ref2) {
68
68
  radiusPx: radiusPx,
69
69
  title: "".concat(Number(region.regions.length).toLocaleString(), " more regions"),
70
70
  color: theme.palette.text.primary
71
- }), /*#__PURE__*/_react["default"].createElement("path", {
72
- d: ['M'].concat((0, _toConsumableArray2["default"])(startXY), ['A', radiusPx, radiusPx, '0', largeArc, '1'], (0, _toConsumableArray2["default"])(endXY)).join(' '),
71
+ }), /*#__PURE__*/_react.default.createElement("path", {
72
+ d: ['M'].concat((0, _toConsumableArray2.default)(startXY), ['A', radiusPx, radiusPx, '0', largeArc, '1'], (0, _toConsumableArray2.default)(endXY)).join(' '),
73
73
  stroke: theme.palette.text.secondary,
74
74
  strokeWidth: 2,
75
75
  strokeDasharray: "2,2",
@@ -93,7 +93,7 @@ var RulerLabel = (0, _mobxReact.observer)(function (_ref3) {
93
93
 
94
94
  if (text.length * 6.5 < maxWidthPx) {
95
95
  // text is rotated parallel to the ruler arc
96
- return /*#__PURE__*/_react["default"].createElement("text", {
96
+ return /*#__PURE__*/_react.default.createElement("text", {
97
97
  x: 0,
98
98
  y: 0,
99
99
  className: classes.rulerLabel,
@@ -103,7 +103,7 @@ var RulerLabel = (0, _mobxReact.observer)(function (_ref3) {
103
103
  style: {
104
104
  fill: color
105
105
  }
106
- }, text, /*#__PURE__*/_react["default"].createElement("title", null, title || text));
106
+ }, text, /*#__PURE__*/_react.default.createElement("title", null, title || text));
107
107
  }
108
108
 
109
109
  if (maxWidthPx > 4) {
@@ -111,7 +111,7 @@ var RulerLabel = (0, _mobxReact.observer)(function (_ref3) {
111
111
  var overallRotation = (0, _util.radToDeg)(radians + view.offsetRadians - Math.PI / 2);
112
112
 
113
113
  if (overallRotation >= 180) {
114
- return /*#__PURE__*/_react["default"].createElement("text", {
114
+ return /*#__PURE__*/_react.default.createElement("text", {
115
115
  x: 0,
116
116
  y: 0,
117
117
  className: classes.rulerLabel,
@@ -121,10 +121,10 @@ var RulerLabel = (0, _mobxReact.observer)(function (_ref3) {
121
121
  style: {
122
122
  fill: color
123
123
  }
124
- }, text, /*#__PURE__*/_react["default"].createElement("title", null, title || text));
124
+ }, text, /*#__PURE__*/_react.default.createElement("title", null, title || text));
125
125
  }
126
126
 
127
- return /*#__PURE__*/_react["default"].createElement("text", {
127
+ return /*#__PURE__*/_react.default.createElement("text", {
128
128
  x: 0,
129
129
  y: 0,
130
130
  className: classes.rulerLabel,
@@ -134,7 +134,7 @@ var RulerLabel = (0, _mobxReact.observer)(function (_ref3) {
134
134
  style: {
135
135
  fill: color
136
136
  }
137
- }, text, /*#__PURE__*/_react["default"].createElement("title", null, title || text));
137
+ }, text, /*#__PURE__*/_react.default.createElement("title", null, title || text));
138
138
  } // if you get here there is no room for the text at all
139
139
 
140
140
 
@@ -169,37 +169,37 @@ var RegionRulerArc = (0, _mobxReact.observer)(function (_ref4) {
169
169
  } // TODO: slice flipping
170
170
 
171
171
 
172
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(RulerLabel, {
172
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(RulerLabel, {
173
173
  text: region.refName,
174
174
  view: model,
175
175
  maxWidthPx: widthPx,
176
176
  radians: centerRadians,
177
177
  radiusPx: radiusPx,
178
178
  color: color
179
- }), /*#__PURE__*/_react["default"].createElement("path", {
179
+ }), /*#__PURE__*/_react.default.createElement("path", {
180
180
  d: sliceArcPath(slice, radiusPx + 1, region.start, region.end),
181
181
  stroke: color,
182
182
  strokeWidth: 2,
183
183
  fill: "none"
184
- }, /*#__PURE__*/_react["default"].createElement("title", null, region.refName)));
184
+ }, /*#__PURE__*/_react.default.createElement("title", null, region.refName)));
185
185
  });
186
186
  var CircularRuler = (0, _mobxReact.observer)(function Ruler(_ref5) {
187
187
  var model = _ref5.model,
188
188
  slice = _ref5.slice;
189
189
 
190
190
  if (slice.region.elided) {
191
- return /*#__PURE__*/_react["default"].createElement(ElisionRulerArc, {
191
+ return /*#__PURE__*/_react.default.createElement(ElisionRulerArc, {
192
192
  key: (0, _util.assembleLocString)(slice.region.regions[0]),
193
193
  model: model,
194
194
  slice: slice
195
195
  });
196
196
  }
197
197
 
198
- return /*#__PURE__*/_react["default"].createElement(RegionRulerArc, {
198
+ return /*#__PURE__*/_react.default.createElement(RegionRulerArc, {
199
199
  key: (0, _util.assembleLocString)(slice.region),
200
200
  model: model,
201
201
  slice: slice
202
202
  });
203
203
  });
204
204
  var _default = CircularRuler;
205
- exports["default"] = _default;
205
+ exports.default = _default;
package/dist/CircularView/models/CircularView.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = CircularView;
8
+ exports.default = CircularView;
9
9
 
10
10
  var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
11
11
 
@@ -27,9 +27,9 @@ var _viewportVisibleRegion = require("./viewportVisibleRegion");
27
27
 
28
28
  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
29
29
 
30
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
30
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
31
31
 
32
- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
32
+ function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
33
33
 
34
34
  function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
35
35
 
@@ -61,7 +61,7 @@ function CircularView(pluginManager) {
61
61
  scrollX: 0,
62
62
  scrollY: 0,
63
63
  trackSelectorType: 'hierarchical'
64
- })["volatile"](function () {
64
+ }).volatile(function () {
65
65
  return {
66
66
  width: 0
67
67
  };
@@ -239,7 +239,7 @@ function CircularView(pluginManager) {
239
239
  }
240
240
 
241
241
  };
242
- })["volatile"](function () {
242
+ }).volatile(function () {
243
243
  return {
244
244
  error: undefined
245
245
  };
package/dist/CircularView/models/slices.js CHANGED
@@ -21,7 +21,7 @@ var _util = require("@jbrowse/core/util");
21
21
 
22
22
  var _viewportVisibleRegion = require("./viewportVisibleRegion");
23
23
 
24
- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
24
+ function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
25
25
 
26
26
  function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
27
27
 
@@ -29,15 +29,15 @@ function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len
29
29
 
30
30
  var Slice = /*#__PURE__*/function () {
31
31
  function Slice(view, region, currentRadianOffset, radianWidth) {
32
- (0, _classCallCheck2["default"])(this, Slice);
32
+ (0, _classCallCheck2.default)(this, Slice);
33
33
  this.region = region;
34
34
  this.radianWidth = radianWidth;
35
- (0, _defineProperty2["default"])(this, "key", void 0);
36
- (0, _defineProperty2["default"])(this, "offsetRadians", void 0);
37
- (0, _defineProperty2["default"])(this, "startRadians", void 0);
38
- (0, _defineProperty2["default"])(this, "endRadians", void 0);
39
- (0, _defineProperty2["default"])(this, "bpPerRadian", void 0);
40
- (0, _defineProperty2["default"])(this, "flipped", void 0);
35
+ (0, _defineProperty2.default)(this, "key", void 0);
36
+ (0, _defineProperty2.default)(this, "offsetRadians", void 0);
37
+ (0, _defineProperty2.default)(this, "startRadians", void 0);
38
+ (0, _defineProperty2.default)(this, "endRadians", void 0);
39
+ (0, _defineProperty2.default)(this, "bpPerRadian", void 0);
40
+ (0, _defineProperty2.default)(this, "flipped", void 0);
41
41
  var bpPerRadian = view.bpPerRadian;
42
42
  this.key = (0, _util.assembleLocString)(region);
43
43
  this.offsetRadians = currentRadianOffset;
@@ -48,7 +48,7 @@ var Slice = /*#__PURE__*/function () {
48
48
  Object.freeze(this);
49
49
  }
50
50
 
51
- (0, _createClass2["default"])(Slice, [{
51
+ (0, _createClass2.default)(Slice, [{
52
52
  key: "bpToXY",
53
53
  value: function bpToXY(bp, radiusPx) {
54
54
  var offsetBp;
@@ -103,7 +103,7 @@ function calculateStaticSlices(self) {
103
103
 
104
104
 
105
105
  function sliceIsVisible(self, slice) {
106
- var _self$visibleSection$ = (0, _slicedToArray2["default"])(self.visibleSection.theta, 2),
106
+ var _self$visibleSection$ = (0, _slicedToArray2.default)(self.visibleSection.theta, 2),
107
107
  visibleThetaMin = _self$visibleSection$[0],
108
108
  visibleThetaMax = _self$visibleSection$[1];
109
109
 
package/dist/CircularView/models/slices.test.js CHANGED
@@ -24,7 +24,7 @@ test('one slice', function () {
24
24
 
25
25
  expect(slices.length).toBe(1);
26
26
 
27
- var _slices = (0, _slicedToArray2["default"])(slices, 1),
27
+ var _slices = (0, _slicedToArray2.default)(slices, 1),
28
28
  slice = _slices[0]; // expect(slices).toMatchSnapshot()
29
29
 
30
30
 
package/dist/CircularView/models/viewportVisibleRegion.js CHANGED
@@ -101,13 +101,13 @@ function thetaRangesOverlap(r1start, r1length, r2start, r2length) {
101
101
 
102
102
 
103
103
  function viewportVisibleSection(viewSides, circleCenter, circleRadius) {
104
- var _viewSides = (0, _slicedToArray2["default"])(viewSides, 4),
104
+ var _viewSides = (0, _slicedToArray2.default)(viewSides, 4),
105
105
  viewL = _viewSides[0],
106
106
  viewR = _viewSides[1],
107
107
  viewT = _viewSides[2],
108
108
  viewB = _viewSides[3];
109
109
 
110
- var _circleCenter = (0, _slicedToArray2["default"])(circleCenter, 2),
110
+ var _circleCenter = (0, _slicedToArray2.default)(circleCenter, 2),
111
111
  cx = _circleCenter[0],
112
112
  cy = _circleCenter[1]; // transform coordinate system to center of circle
113
113
 
@@ -123,7 +123,7 @@ function viewportVisibleSection(viewSides, circleCenter, circleRadius) {
123
123
  var maxRho = -Infinity;
124
124
 
125
125
  for (var i = 0; i < _vertices.length; i += 1) {
126
- var _vertices$i = (0, _slicedToArray2["default"])(_vertices[i], 2),
126
+ var _vertices$i = (0, _slicedToArray2.default)(_vertices[i], 2),
127
127
  x = _vertices$i[0],
128
128
  y = _vertices$i[1];
129
129
 
@@ -231,13 +231,13 @@ function viewportVisibleSection(viewSides, circleCenter, circleRadius) {
231
231
 
232
232
  for (var _i = 0; _i < vertices.length; _i += 1) {
233
233
  // ignore vertex if outside the viewport
234
- var _vertices$_i = (0, _slicedToArray2["default"])(vertices[_i], 2),
234
+ var _vertices$_i = (0, _slicedToArray2.default)(vertices[_i], 2),
235
235
  vx = _vertices$_i[0],
236
236
  vy = _vertices$_i[1];
237
237
 
238
238
  if (vx >= viewL && vx <= viewR && vy >= viewT && vy <= viewB) {
239
239
  var _cartesianToPolar = cartesianToPolar(vx * reflect, vy * reflect),
240
- _cartesianToPolar2 = (0, _slicedToArray2["default"])(_cartesianToPolar, 2),
240
+ _cartesianToPolar2 = (0, _slicedToArray2.default)(_cartesianToPolar, 2),
241
241
  _rho = _cartesianToPolar2[0],
242
242
  theta = _cartesianToPolar2[1]; // ignore vertex if outside the circle
243
243
 
package/dist/CircularView/models/viewportVisibleRegion.test.js CHANGED
@@ -102,12 +102,12 @@ describe('viewportVisibleSection', function () {
102
102
  describe('cartesian to polar', function () {
103
103
  ;
104
104
  [[[-1, -1], [1.414, 180 + 45]], [[-1, 1], [1.414, 90 + 45]], [[1, 1], [1.414, 45]], [[1, -1], [1.414, 360 - 45]], [[0, 1], [1, 90]], [[0, -1], [1, 270]], [[-1, 0], [1, 180]], [[1, 0], [1, 0]]].forEach(function (testCase) {
105
- var _testCase = (0, _slicedToArray2["default"])(testCase, 2),
105
+ var _testCase = (0, _slicedToArray2.default)(testCase, 2),
106
106
  input = _testCase[0],
107
107
  output = _testCase[1];
108
108
 
109
109
  test("".concat(input, " -> ").concat(output), function () {
110
- var result = _viewportVisibleRegion.cartesianToPolar.apply(void 0, (0, _toConsumableArray2["default"])(input));
110
+ var result = _viewportVisibleRegion.cartesianToPolar.apply(void 0, (0, _toConsumableArray2.default)(input));
111
111
 
112
112
  expect(result[0]).toBeCloseTo(output[0]);
113
113
  expect(result[1] * 180 / Math.PI).toBeCloseTo(output[1]);
@@ -117,12 +117,12 @@ describe('cartesian to polar', function () {
117
117
  describe('theta overlap testing', function () {
118
118
  ;
119
119
  [[[0, 2 * Math.PI, 0, 2 * Math.PI], true], [[6.1, Math.PI / 2, 0, Math.PI / 2], true], [[6.1, Math.PI / 2, 0, 0.1], true], [[6.1, 0.1, 6.12, 0.05], true], [[-12, 0.1, -12.05, 0.05], false], [[-12, 0.1, -12.05, 0.06], true]].forEach(function (testCase) {
120
- var _testCase2 = (0, _slicedToArray2["default"])(testCase, 2),
120
+ var _testCase2 = (0, _slicedToArray2.default)(testCase, 2),
121
121
  input = _testCase2[0],
122
122
  output = _testCase2[1];
123
123
 
124
124
  test("".concat(input, " -> ").concat(output), function () {
125
- var result = _viewportVisibleRegion.thetaRangesOverlap.apply(void 0, (0, _toConsumableArray2["default"])(input));
125
+ var result = _viewportVisibleRegion.thetaRangesOverlap.apply(void 0, (0, _toConsumableArray2.default)(input));
126
126
 
127
127
  expect(result).toBe(output);
128
128
  });
package/dist/index.js CHANGED
@@ -25,7 +25,7 @@ Object.defineProperty(exports, "baseChordDisplayConfig", {
25
25
  return _BaseChordDisplay.baseChordDisplayConfig;
26
26
  }
27
27
  });
28
- exports["default"] = void 0;
28
+ exports.default = void 0;
29
29
 
30
30
  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
31
31
 
@@ -63,42 +63,42 @@ var _BaseChordDisplay = require("./BaseChordDisplay");
63
63
 
64
64
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
65
65
 
66
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
66
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
67
67
 
68
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
68
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
69
69
 
70
70
  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
71
71
 
72
72
  var CircularViewPlugin = /*#__PURE__*/function (_Plugin) {
73
- (0, _inherits2["default"])(CircularViewPlugin, _Plugin);
73
+ (0, _inherits2.default)(CircularViewPlugin, _Plugin);
74
74
 
75
75
  var _super = _createSuper(CircularViewPlugin);
76
76
 
77
77
  function CircularViewPlugin() {
78
78
  var _this;
79
79
 
80
- (0, _classCallCheck2["default"])(this, CircularViewPlugin);
80
+ (0, _classCallCheck2.default)(this, CircularViewPlugin);
81
81
 
82
82
  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
83
83
  args[_key] = arguments[_key];
84
84
  }
85
85
 
86
86
  _this = _super.call.apply(_super, [this].concat(args));
87
- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'CircularViewPlugin');
87
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'CircularViewPlugin');
88
88
  return _this;
89
89
  }
90
90
 
91
- (0, _createClass2["default"])(CircularViewPlugin, [{
91
+ (0, _createClass2.default)(CircularViewPlugin, [{
92
92
  key: "install",
93
93
  value: function install(pluginManager) {
94
94
  pluginManager.addViewType(function () {
95
- return new _ViewType["default"]({
95
+ return new _ViewType.default({
96
96
  ReactComponent: /*#__PURE__*/(0, _react.lazy)(function () {
97
97
  return Promise.resolve().then(function () {
98
98
  return _interopRequireWildcard(require('./CircularView/components/CircularView'));
99
99
  });
100
100
  }),
101
- stateModel: (0, _CircularView["default"])(pluginManager),
101
+ stateModel: (0, _CircularView.default)(pluginManager),
102
102
  name: 'CircularView'
103
103
  });
104
104
  });
@@ -106,10 +106,10 @@ var CircularViewPlugin = /*#__PURE__*/function (_Plugin) {
106
106
  /*#__PURE__*/
107
107
  // @ts-ignore
108
108
  function () {
109
- var _ref2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(_ref) {
109
+ var _ref2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(_ref) {
110
110
  var session, assembly, loc, _ref$tracks, tracks, assemblyManager, view, asm;
111
111
 
112
- return _regenerator["default"].wrap(function _callee$(_context) {
112
+ return _regenerator.default.wrap(function _callee$(_context) {
113
113
  while (1) {
114
114
  switch (_context.prev = _context.next) {
115
115
  case 0:
@@ -168,7 +168,7 @@ var CircularViewPlugin = /*#__PURE__*/function (_Plugin) {
168
168
  if ((0, _util.isAbstractMenuManager)(pluginManager.rootModel)) {
169
169
  pluginManager.rootModel.appendToSubMenu(['Add'], {
170
170
  label: 'Circular view',
171
- icon: _DataUsage["default"],
171
+ icon: _DataUsage.default,
172
172
  onClick: function onClick(session) {
173
173
  session.addView('CircularView', {});
174
174
  }
@@ -177,6 +177,6 @@ var CircularViewPlugin = /*#__PURE__*/function (_Plugin) {
177
177
  }
178
178
  }]);
179
179
  return CircularViewPlugin;
180
- }(_Plugin2["default"]);
180
+ }(_Plugin2.default);
181
181
 
182
- exports["default"] = CircularViewPlugin;
182
+ exports.default = CircularViewPlugin;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-circular-view",
3
- "version": "1.7.3",
3
+ "version": "1.7.6",
4
4
  "description": "JBrowse 2 circular view",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -33,6 +33,7 @@
33
33
  "postbuild": "tsc --build tsconfig.build.json"
34
34
  },
35
35
  "dependencies": {
36
+ "@babel/runtime": "^7.17.9",
36
37
  "@material-ui/icons": "^4.9.1"
37
38
  },
38
39
  "peerDependencies": {
@@ -47,5 +48,5 @@
47
48
  "publishConfig": {
48
49
  "access": "public"
49
50
  },
50
- "gitHead": "09b13c85acf4ac68dd71ab23af87656c7552fdaf"
51
+ "gitHead": "dbd73f99714e395cf20877d5e05d26855857a0e3"
51
52
  }