@jbrowse/plugin-circular-view 1.7.10 → 2.0.1

package/dist/CircularView/models/viewportVisibleRegion.js

@@ -1,280 +1,245 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.cartesianToPolar = cartesianToPolar;
-exports.thetaRangesOverlap = thetaRangesOverlap;
-exports.viewportVisibleSection = viewportVisibleSection;
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.viewportVisibleSection = exports.thetaRangesOverlap = exports.cartesianToPolar = void 0;
 function findCircleIntersectionX(y, cx, cy, r, resultArray) {
-  var d = Math.abs(y - cy);
-
-  if (d > r) {
-    return;
-  }
-
-  if (d === r) {
-    resultArray.push([cx, y]);
-  }
-
-  var solution = Math.sqrt(r * r - d * d);
-  resultArray.push([cx - solution, y]);
-  resultArray.push([cx + solution, y]);
+    var d = Math.abs(y - cy);
+    if (d > r) {
+        return;
+    }
+    if (d === r) {
+        resultArray.push([cx, y]);
+    }
+    var solution = Math.sqrt(r * r - d * d);
+    resultArray.push([cx - solution, y]);
+    resultArray.push([cx + solution, y]);
 }
-
 function findCircleIntersectionY(x, cx, cy, r, resultArray) {
-  var d = Math.abs(x - cx);
-
-  if (d > r) {
-    return;
-  }
-
-  if (d === r) {
-    resultArray.push([x, cy]);
-  }
-
-  var solution = Math.sqrt(r * r - d * d);
-  resultArray.push([x, cy - solution]);
-  resultArray.push([x, cy + solution]);
+    var d = Math.abs(x - cx);
+    if (d > r) {
+        return;
+    }
+    if (d === r) {
+        resultArray.push([x, cy]);
+    }
+    var solution = Math.sqrt(r * r - d * d);
+    resultArray.push([x, cy - solution]);
+    resultArray.push([x, cy + solution]);
 }
-
 function cartesianToTheta(x, y) {
-  var theta = (Math.atan(y / x) + 2 * Math.PI) % (2 * Math.PI);
-
-  if (x < 0) {
-    if (y <= 0) {
-      theta += Math.PI;
-    } else {
-      theta -= Math.PI;
+    var theta = (Math.atan(y / x) + 2 * Math.PI) % (2 * Math.PI);
+    if (x < 0) {
+        if (y <= 0) {
+            theta += Math.PI;
+        }
+        else {
+            theta -= Math.PI;
+        }
     }
-  }
-
-  return theta;
+    return theta;
 }
-
 function cartesianToPolar(x, y) {
-  var rho = Math.sqrt(x * x + y * y);
-
-  if (rho === 0) {
-    return [0, 0];
-  }
-
-  var theta = cartesianToTheta(x, y);
-  return [rho, theta];
+    var rho = Math.sqrt(x * x + y * y);
+    if (rho === 0) {
+        return [0, 0];
+    }
+    var theta = cartesianToTheta(x, y);
+    return [rho, theta];
 }
-
+exports.cartesianToPolar = cartesianToPolar;
 var twoPi = 2 * Math.PI;
-
 function thetaRangesOverlap(r1start, r1length, r2start, r2length) {
-  if (r1length <= 0 || r2length <= 0) {
-    return false;
-  }
-
-  if (r1length + 0.0001 >= twoPi || r2length + 0.0001 >= twoPi) {
-    return true;
-  } // put both range starts between 2π and 4π
-
-
-  r1start = (r1start % twoPi + twoPi) % twoPi + twoPi;
-  r2start = (r2start % twoPi + twoPi) % twoPi + twoPi;
-
-  if (r1start < r2start + r2length && r1start + r1length > r2start) {
-    return true;
-  } // move r2 2π to the left and check
-
-
-  r2start -= twoPi;
-
-  if (r1start < r2start + r2length && r1start + r1length > r2start) {
-    return true;
-  } // move it 2π to the right and check
-
-
-  r2start += twoPi + twoPi;
-  return r1start < r2start + r2length && r1start + r1length > r2start;
-} // return which arc range has any part of the circle visible in the viewport
-
-
-function viewportVisibleSection(viewSides, circleCenter, circleRadius) {
-  var _viewSides = (0, _slicedToArray2.default)(viewSides, 4),
-      viewL = _viewSides[0],
-      viewR = _viewSides[1],
-      viewT = _viewSides[2],
-      viewB = _viewSides[3];
-
-  var _circleCenter = (0, _slicedToArray2.default)(circleCenter, 2),
-      cx = _circleCenter[0],
-      cy = _circleCenter[1]; // transform coordinate system to center of circle
-
-
-  viewL -= cx;
-  viewR -= cx;
-  viewT -= cy;
-  viewB -= cy;
-  var centerIsInsideViewport = viewL < 0 && viewR > 0 && viewT < 0 && viewB > 0;
-
-  if (centerIsInsideViewport) {
-    var _vertices = [[viewL, viewT], [viewR, viewT], [viewL, viewB], [viewR, viewB]];
-    var maxRho = -Infinity;
-
-    for (var i = 0; i < _vertices.length; i += 1) {
-      var _vertices$i = (0, _slicedToArray2.default)(_vertices[i], 2),
-          x = _vertices$i[0],
-          y = _vertices$i[1];
-
-      var rho = Math.sqrt(x * x + y * y);
-
-      if (rho > maxRho) {
-        maxRho = rho;
-      }
+    if (r1length <= 0 || r2length <= 0) {
+        return false;
     }
-
-    return {
-      rho: [0, Math.min(circleRadius, maxRho)],
-      theta: [0, 2 * Math.PI]
-    };
-  } // const viewportCompletelyContainsCircle =
-  //   circleCenter[0] - viewL >= circleRadius &&
-  //   viewR - circleCenter[0] >= circleRadius &&
-  //   circleCenter[1] - viewT >= circleRadius &&
-  //   viewB - circleCenter[1] >= circleRadius
-  // if (viewportCompletelyContainsCircle) {
-  //   return [0, 2 * Math.PI]
-  // }
-  // const distToCenterSquared = ([x, y]) => {
-  //   const [cx, cy] = circleCenter
-  //   const sq = n => n * n
-  //   return sq(x - cx) + sq(y - cy)
-  // }
-  // const circleRadiusSquared = circleRadius * circleRadius
-  // const tlInside = distToCenterSquared([viewL, viewT]) <= circleRadiusSquared
-  // const trInside = distToCenterSquared([viewR, viewT]) <= circleRadiusSquared
-  // const blInside = distToCenterSquared([viewL, viewB]) <= circleRadiusSquared
-  // const brInside = distToCenterSquared([viewR, viewB]) <= circleRadiusSquared
-  // const noIntersection = !tlInside && !trInside && !blInside && !brInside
-  // if (noIntersection) return undefined
-  // const circleCompletelyContainsViewport =
-  //   tlInside && trInside && blInside && brInside
-  // if (circleCompletelyContainsViewport) {
-  //   // viewport is in the circle, but the center is not in it, so take max
-  //   // and min of thetas to the center
-  //   const thetas = [
-  //     Math.atan(viewT / viewL),
-  //     Math.atan(viewT / viewR),
-  //     Math.atan(viewB / viewL),
-  //     Math.atan(viewB / viewR),
-  //   ]
-  //   return [Math.min(...thetas), Math.max(...thetas)]
-  // }
-  // if we get here, the viewport is partly in, partly out of the circle
-  // const viewLIntersects = Math.abs(viewL - circleCenter[0]) <= circleRadius
-  // const viewRIntersects = Math.abs(viewR - circleCenter[0]) <= circleRadius
-  // const viewTIntersects = Math.abs(viewT - circleCenter[1]) <= circleRadius
-  // const viewBIntersects = Math.abs(viewB - circleCenter[1]) <= circleRadius
-  // const numIntersectingSides =
-  //   Number(viewLIntersects) +
-  //   Number(viewRIntersects) +
-  //   Number(viewTIntersects) +
-  //   Number(viewBIntersects)
-  // if (numIntersectingSides === 4) return [0, 2 * Math.PI]
-  // if (numIntersectingSides === 3) {
-  //   // TODO calculate the thetas of the
-  // } else if (numIntersectingSides === 2) {
-  //   // TODO calculate the thetas of the 2 intersection points
-  // } else if (numIntersectingSides === 1) {
-  //   // TODO calculate the thetas of the 1-2 intersection points of the line, and the angle between
-  // }
-  // make a list of vertices-of-interest that lie inside both shapes to examine
-  // to determine the range covered by their intersection
-  // transform coordinates to have the circle as the origin and find the intersections
-  // of the circle and the view rectangle
-
-
-  var vertices = [[viewL, viewT], [viewR, viewT], [viewL, viewB], [viewR, viewB]];
-  findCircleIntersectionY(viewL, 0, 0, circleRadius, vertices);
-  findCircleIntersectionY(viewR, 0, 0, circleRadius, vertices);
-  findCircleIntersectionX(viewT, 0, 0, circleRadius, vertices);
-  findCircleIntersectionX(viewB, 0, 0, circleRadius, vertices); // for each edge, also look at the closest point to center if it is inside the circle
-
-  if (-viewL < circleRadius) {
-    vertices.push([viewL, 0]);
-  }
-
-  if (viewR < circleRadius) {
-    vertices.push([viewR, 0]);
-  }
-
-  if (-viewT < circleRadius) {
-    vertices.push([0, viewT]);
-  }
-
-  if (viewB < circleRadius) {
-    vertices.push([0, viewB]);
-  } // const verticesOriginal = vertices.map(([x, y]) => [x + cx, y + cy])
-  // now convert them all to polar and take the max and min of rho and theta
-  // const viewportCenterTheta = cartesianToTheta(viewR + viewL, viewT + viewB)
-
-
-  var reflect = viewL >= 0 ? -1 : 1; // viewportCenterTheta < Math.PI / 2 || viewportCenterTheta > 1.5 * Math.PI
-  //   ? -1
-  //   : 1
-
-  var rhoMin = Infinity;
-  var rhoMax = -Infinity;
-  var thetaMin = Infinity;
-  var thetaMax = -Infinity;
-
-  for (var _i = 0; _i < vertices.length; _i += 1) {
-    // ignore vertex if outside the viewport
-    var _vertices$_i = (0, _slicedToArray2.default)(vertices[_i], 2),
-        vx = _vertices$_i[0],
-        vy = _vertices$_i[1];
-
-    if (vx >= viewL && vx <= viewR && vy >= viewT && vy <= viewB) {
-      var _cartesianToPolar = cartesianToPolar(vx * reflect, vy * reflect),
-          _cartesianToPolar2 = (0, _slicedToArray2.default)(_cartesianToPolar, 2),
-          _rho = _cartesianToPolar2[0],
-          theta = _cartesianToPolar2[1]; // ignore vertex if outside the circle
-
-
-      if (_rho <= circleRadius + 0.001) {
-        // ignore theta if rho is 0
-        if (theta < thetaMin && _rho > 0.0001) {
-          thetaMin = theta;
-        }
-
-        if (theta > thetaMax && _rho > 0.0001) {
-          thetaMax = theta;
-        }
-
-        if (_rho < rhoMin) {
-          rhoMin = _rho;
+    if (r1length + 0.0001 >= twoPi || r2length + 0.0001 >= twoPi) {
+        return true;
+    }
+    // put both range starts between 2π and 4π
+    r1start = (((r1start % twoPi) + twoPi) % twoPi) + twoPi;
+    r2start = (((r2start % twoPi) + twoPi) % twoPi) + twoPi;
+    if (r1start < r2start + r2length && r1start + r1length > r2start) {
+        return true;
+    }
+    // move r2 2π to the left and check
+    r2start -= twoPi;
+    if (r1start < r2start + r2length && r1start + r1length > r2start) {
+        return true;
+    }
+    // move it 2π to the right and check
+    r2start += twoPi + twoPi;
+    return r1start < r2start + r2length && r1start + r1length > r2start;
+}
+exports.thetaRangesOverlap = thetaRangesOverlap;
+// return which arc range has any part of the circle visible in the viewport
+function viewportVisibleSection(viewSides, circleCenter, circleRadius) {
+    var _a = __read(viewSides, 4), viewL = _a[0], viewR = _a[1], viewT = _a[2], viewB = _a[3];
+    var _b = __read(circleCenter, 2), cx = _b[0], cy = _b[1];
+    // transform coordinate system to center of circle
+    viewL -= cx;
+    viewR -= cx;
+    viewT -= cy;
+    viewB -= cy;
+    var centerIsInsideViewport = viewL < 0 && viewR > 0 && viewT < 0 && viewB > 0;
+    if (centerIsInsideViewport) {
+        var vertices_1 = [
+            [viewL, viewT],
+            [viewR, viewT],
+            [viewL, viewB],
+            [viewR, viewB],
+        ];
+        var maxRho = -Infinity;
+        for (var i = 0; i < vertices_1.length; i += 1) {
+            var _c = __read(vertices_1[i], 2), x = _c[0], y = _c[1];
+            var rho = Math.sqrt(x * x + y * y);
+            if (rho > maxRho) {
+                maxRho = rho;
+            }
         }
-
-        if (_rho > rhoMax) {
-          rhoMax = _rho;
+        return {
+            rho: [0, Math.min(circleRadius, maxRho)],
+            theta: [0, 2 * Math.PI],
+        };
+    }
+    // const viewportCompletelyContainsCircle =
+    //   circleCenter[0] - viewL >= circleRadius &&
+    //   viewR - circleCenter[0] >= circleRadius &&
+    //   circleCenter[1] - viewT >= circleRadius &&
+    //   viewB - circleCenter[1] >= circleRadius
+    // if (viewportCompletelyContainsCircle) {
+    //   return [0, 2 * Math.PI]
+    // }
+    // const distToCenterSquared = ([x, y]) => {
+    //   const [cx, cy] = circleCenter
+    //   const sq = n => n * n
+    //   return sq(x - cx) + sq(y - cy)
+    // }
+    // const circleRadiusSquared = circleRadius * circleRadius
+    // const tlInside = distToCenterSquared([viewL, viewT]) <= circleRadiusSquared
+    // const trInside = distToCenterSquared([viewR, viewT]) <= circleRadiusSquared
+    // const blInside = distToCenterSquared([viewL, viewB]) <= circleRadiusSquared
+    // const brInside = distToCenterSquared([viewR, viewB]) <= circleRadiusSquared
+    // const noIntersection = !tlInside && !trInside && !blInside && !brInside
+    // if (noIntersection) return undefined
+    // const circleCompletelyContainsViewport =
+    //   tlInside && trInside && blInside && brInside
+    // if (circleCompletelyContainsViewport) {
+    //   // viewport is in the circle, but the center is not in it, so take max
+    //   // and min of thetas to the center
+    //   const thetas = [
+    //     Math.atan(viewT / viewL),
+    //     Math.atan(viewT / viewR),
+    //     Math.atan(viewB / viewL),
+    //     Math.atan(viewB / viewR),
+    //   ]
+    //   return [Math.min(...thetas), Math.max(...thetas)]
+    // }
+    // if we get here, the viewport is partly in, partly out of the circle
+    // const viewLIntersects = Math.abs(viewL - circleCenter[0]) <= circleRadius
+    // const viewRIntersects = Math.abs(viewR - circleCenter[0]) <= circleRadius
+    // const viewTIntersects = Math.abs(viewT - circleCenter[1]) <= circleRadius
+    // const viewBIntersects = Math.abs(viewB - circleCenter[1]) <= circleRadius
+    // const numIntersectingSides =
+    //   Number(viewLIntersects) +
+    //   Number(viewRIntersects) +
+    //   Number(viewTIntersects) +
+    //   Number(viewBIntersects)
+    // if (numIntersectingSides === 4) return [0, 2 * Math.PI]
+    // if (numIntersectingSides === 3) {
+    //   // TODO calculate the thetas of the
+    // } else if (numIntersectingSides === 2) {
+    //   // TODO calculate the thetas of the 2 intersection points
+    // } else if (numIntersectingSides === 1) {
+    //   // TODO calculate the thetas of the 1-2 intersection points of the line, and the angle between
+    // }
+    // make a list of vertices-of-interest that lie inside both shapes to examine
+    // to determine the range covered by their intersection
+    // transform coordinates to have the circle as the origin and find the intersections
+    // of the circle and the view rectangle
+    var vertices = [
+        [viewL, viewT],
+        [viewR, viewT],
+        [viewL, viewB],
+        [viewR, viewB],
+    ];
+    findCircleIntersectionY(viewL, 0, 0, circleRadius, vertices);
+    findCircleIntersectionY(viewR, 0, 0, circleRadius, vertices);
+    findCircleIntersectionX(viewT, 0, 0, circleRadius, vertices);
+    findCircleIntersectionX(viewB, 0, 0, circleRadius, vertices);
+    // for each edge, also look at the closest point to center if it is inside the circle
+    if (-viewL < circleRadius) {
+        vertices.push([viewL, 0]);
+    }
+    if (viewR < circleRadius) {
+        vertices.push([viewR, 0]);
+    }
+    if (-viewT < circleRadius) {
+        vertices.push([0, viewT]);
+    }
+    if (viewB < circleRadius) {
+        vertices.push([0, viewB]);
+    }
+    // const verticesOriginal = vertices.map(([x, y]) => [x + cx, y + cy])
+    // now convert them all to polar and take the max and min of rho and theta
+    // const viewportCenterTheta = cartesianToTheta(viewR + viewL, viewT + viewB)
+    var reflect = viewL >= 0 ? -1 : 1;
+    // viewportCenterTheta < Math.PI / 2 || viewportCenterTheta > 1.5 * Math.PI
+    //   ? -1
+    //   : 1
+    var rhoMin = Infinity;
+    var rhoMax = -Infinity;
+    var thetaMin = Infinity;
+    var thetaMax = -Infinity;
+    for (var i = 0; i < vertices.length; i += 1) {
+        // ignore vertex if outside the viewport
+        var _d = __read(vertices[i], 2), vx = _d[0], vy = _d[1];
+        if (vx >= viewL && vx <= viewR && vy >= viewT && vy <= viewB) {
+            var _e = __read(cartesianToPolar(vx * reflect, vy * reflect), 2), rho = _e[0], theta = _e[1];
+            // ignore vertex if outside the circle
+            if (rho <= circleRadius + 0.001) {
+                // ignore theta if rho is 0
+                if (theta < thetaMin && rho > 0.0001) {
+                    thetaMin = theta;
+                }
+                if (theta > thetaMax && rho > 0.0001) {
+                    thetaMax = theta;
+                }
+                if (rho < rhoMin) {
+                    rhoMin = rho;
+                }
+                if (rho > rhoMax) {
+                    rhoMax = rho;
+                }
+            }
         }
-      }
     }
-  }
-
-  if (reflect === -1) {
-    thetaMin += Math.PI;
-    thetaMax += Math.PI;
-  }
-
-  if (thetaMin > 2 * Math.PI && thetaMax > 2 * Math.PI) {
-    thetaMin -= 2 * Math.PI;
-    thetaMax -= 2 * Math.PI;
-  }
-
-  return {
-    rho: [rhoMin, Math.min(circleRadius, rhoMax)],
-    theta: [thetaMin, thetaMax]
-  };
-}
+    if (reflect === -1) {
+        thetaMin += Math.PI;
+        thetaMax += Math.PI;
+    }
+    if (thetaMin > 2 * Math.PI && thetaMax > 2 * Math.PI) {
+        thetaMin -= 2 * Math.PI;
+        thetaMax -= 2 * Math.PI;
+    }
+    return {
+        rho: [rhoMin, Math.min(circleRadius, rhoMax)],
+        theta: [thetaMin, thetaMax],
+    };
+}
+exports.viewportVisibleSection = viewportVisibleSection;
+//# sourceMappingURL=viewportVisibleRegion.js.map

package/dist/CircularView/models/viewportVisibleRegion.js.map

@@ -0,0 +1 @@
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package/dist/index.d.ts

@@ -1,8 +1,10 @@
 import PluginManager from '@jbrowse/core/PluginManager';
 import Plugin from '@jbrowse/core/Plugin';
+import { CircularViewModel, CircularViewStateModel } from './CircularView/models/CircularView';
 export default class CircularViewPlugin extends Plugin {
     name: string;
     install(pluginManager: PluginManager): void;
     configure(pluginManager: PluginManager): void;
 }
-export { BaseChordDisplayModel, baseChordDisplayConfig, BaseChordDisplayComponentFactory, } from './BaseChordDisplay';
+export { BaseChordDisplayModel, baseChordDisplayConfig, BaseChordDisplayComponent, } from './BaseChordDisplay';
+export type { CircularViewModel, CircularViewStateModel };