@jbrowse/plugin-circular-view 1.6.9 → 1.7.2

package/dist/index.js

@@ -1,8 +1,182 @@
+"use strict";
 
-'use strict'
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
-if (process.env.NODE_ENV === 'production') {
-  module.exports = require('./plugin-circular-view.cjs.production.min.js')
-} else {
-  module.exports = require('./plugin-circular-view.cjs.development.js')
-}
+var _typeof = require("@babel/runtime/helpers/typeof");
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+Object.defineProperty(exports, "BaseChordDisplayComponentFactory", {
+  enumerable: true,
+  get: function get() {
+    return _BaseChordDisplay.BaseChordDisplayComponentFactory;
+  }
+});
+Object.defineProperty(exports, "BaseChordDisplayModel", {
+  enumerable: true,
+  get: function get() {
+    return _BaseChordDisplay.BaseChordDisplayModel;
+  }
+});
+Object.defineProperty(exports, "baseChordDisplayConfig", {
+  enumerable: true,
+  get: function get() {
+    return _BaseChordDisplay.baseChordDisplayConfig;
+  }
+});
+exports["default"] = void 0;
+
+var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
+
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
+
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
+
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
+var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
+
+var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
+
+var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
+
+var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
+
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+
+var _react = require("react");
+
+var _mobx = require("mobx");
+
+var _util = require("@jbrowse/core/util");
+
+var _Plugin2 = _interopRequireDefault(require("@jbrowse/core/Plugin"));
+
+var _ViewType = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/ViewType"));
+
+var _DataUsage = _interopRequireDefault(require("@material-ui/icons/DataUsage"));
+
+var _CircularView = _interopRequireDefault(require("./CircularView/models/CircularView"));
+
+var _BaseChordDisplay = require("./BaseChordDisplay");
+
+function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
+
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+
+function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
+
+var CircularViewPlugin = /*#__PURE__*/function (_Plugin) {
+  (0, _inherits2["default"])(CircularViewPlugin, _Plugin);
+
+  var _super = _createSuper(CircularViewPlugin);
+
+  function CircularViewPlugin() {
+    var _this;
+
+    (0, _classCallCheck2["default"])(this, CircularViewPlugin);
+
+    for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
+      args[_key] = arguments[_key];
+    }
+
+    _this = _super.call.apply(_super, [this].concat(args));
+    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'CircularViewPlugin');
+    return _this;
+  }
+
+  (0, _createClass2["default"])(CircularViewPlugin, [{
+    key: "install",
+    value: function install(pluginManager) {
+      pluginManager.addViewType(function () {
+        return new _ViewType["default"]({
+          ReactComponent: /*#__PURE__*/(0, _react.lazy)(function () {
+            return Promise.resolve().then(function () {
+              return _interopRequireWildcard(require('./CircularView/components/CircularView'));
+            });
+          }),
+          stateModel: (0, _CircularView["default"])(pluginManager),
+          name: 'CircularView'
+        });
+      });
+      pluginManager.addToExtensionPoint('LaunchView-CircularView',
+      /*#__PURE__*/
+      // @ts-ignore
+      function () {
+        var _ref2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(_ref) {
+          var session, assembly, loc, _ref$tracks, tracks, assemblyManager, view, asm;
+
+          return _regenerator["default"].wrap(function _callee$(_context) {
+            while (1) {
+              switch (_context.prev = _context.next) {
+                case 0:
+                  session = _ref.session, assembly = _ref.assembly, loc = _ref.loc, _ref$tracks = _ref.tracks, tracks = _ref$tracks === void 0 ? [] : _ref$tracks;
+                  assemblyManager = session.assemblyManager;
+                  view = session.addView('CircularView', {});
+                  _context.next = 5;
+                  return (0, _mobx.when)(function () {
+                    return view.initialized;
+                  });
+
+                case 5:
+                  if (assembly) {
+                    _context.next = 7;
+                    break;
+                  }
+
+                  throw new Error('No assembly provided when launching circular genome view');
+
+                case 7:
+                  _context.next = 9;
+                  return assemblyManager.waitForAssembly(assembly);
+
+                case 9:
+                  asm = _context.sent;
+
+                  if (asm) {
+                    _context.next = 12;
+                    break;
+                  }
+
+                  throw new Error("Assembly \"".concat(assembly, "\" not found when launching circular genome view"));
+
+                case 12:
+                  view.setDisplayedRegions(asm.regions || []);
+                  tracks.forEach(function (track) {
+                    return view.showTrack(track);
+                  });
+
+                case 14:
+                case "end":
+                  return _context.stop();
+              }
+            }
+          }, _callee);
+        }));
+
+        return function (_x) {
+          return _ref2.apply(this, arguments);
+        };
+      }());
+    }
+  }, {
+    key: "configure",
+    value: function configure(pluginManager) {
+      if ((0, _util.isAbstractMenuManager)(pluginManager.rootModel)) {
+        pluginManager.rootModel.appendToSubMenu(['Add'], {
+          label: 'Circular view',
+          icon: _DataUsage["default"],
+          onClick: function onClick(session) {
+            session.addView('CircularView', {});
+          }
+        });
+      }
+    }
+  }]);
+  return CircularViewPlugin;
+}(_Plugin2["default"]);
+
+exports["default"] = CircularViewPlugin;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-circular-view",
-  "version": "1.6.9",
+  "version": "1.7.2",
   "description": "JBrowse 2 circular view",
   "keywords": [
     "jbrowse",
@@ -18,21 +18,19 @@
   "distMain": "dist/index.js",
   "srcMain": "src/index.ts",
   "main": "dist/index.js",
-  "distModule": "dist/plugin-circular-view.esm.js",
-  "module": "dist/plugin-circular-view.esm.js",
   "files": [
     "dist",
     "src"
   ],
   "scripts": {
-    "start": "tsdx watch --verbose --noClean",
-    "build": "tsdx build",
+    "build": "babel src --root-mode upward --out-dir dist --extensions .ts,.js,.tsx,.jsx",
     "test": "cd ../..; jest plugins/circular-view",
     "prepublishOnly": "yarn test",
     "prepack": "yarn build; yarn useDist",
     "postpack": "yarn useSrc",
     "useDist": "node ../../scripts/useDist.js",
-    "useSrc": "node ../../scripts/useSrc.js"
+    "useSrc": "node ../../scripts/useSrc.js",
+    "postbuild": "tsc --build tsconfig.build.json"
   },
   "dependencies": {
     "@material-ui/icons": "^4.9.1"
@@ -49,5 +47,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "f6c3d4edfadc26f7ac635a2fa7259f50f0c7e5e3"
+  "gitHead": "8710d5770cfebb7351f0a802da2d0c5a0b9e42ba"
 }

package/dist/CircularView/models/slices.test.d.ts

@@ -1 +0,0 @@
-export {};

package/dist/CircularView/models/viewportVisibleRegion.test.d.ts

@@ -1 +0,0 @@
-export {};