@jbrowse/plugin-circular-view 1.6.8 → 1.7.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseChordDisplay/components/BaseChordDisplay.d.ts +9 -9
- package/dist/BaseChordDisplay/components/BaseChordDisplay.js +53 -0
- package/dist/BaseChordDisplay/components/DisplayError.d.ts +4 -4
- package/dist/BaseChordDisplay/components/DisplayError.js +70 -0
- package/dist/BaseChordDisplay/components/Loading.d.ts +10 -10
- package/dist/BaseChordDisplay/components/Loading.js +122 -0
- package/dist/BaseChordDisplay/components/RpcRenderedSvgGroup.d.ts +4 -4
- package/dist/BaseChordDisplay/components/RpcRenderedSvgGroup.js +96 -0
- package/dist/BaseChordDisplay/index.d.ts +3 -3
- package/dist/BaseChordDisplay/index.js +31 -0
- package/dist/BaseChordDisplay/models/BaseChordDisplayModel.d.ts +99 -99
- package/dist/BaseChordDisplay/models/BaseChordDisplayModel.js +261 -0
- package/dist/BaseChordDisplay/models/baseChordDisplayConfig.d.ts +2 -2
- package/dist/BaseChordDisplay/models/baseChordDisplayConfig.js +20 -0
- package/dist/BaseChordDisplay/models/renderReaction.d.ts +30 -30
- package/dist/BaseChordDisplay/models/renderReaction.js +142 -0
- package/dist/CircularView/components/CircularView.d.ts +4 -4
- package/dist/CircularView/components/CircularView.js +203 -0
- package/dist/CircularView/components/ImportForm.d.ts +5 -5
- package/dist/CircularView/components/ImportForm.js +97 -0
- package/dist/CircularView/components/Ruler.d.ts +5 -5
- package/dist/CircularView/components/Ruler.js +205 -0
- package/dist/CircularView/models/CircularView.d.ts +97 -97
- package/dist/CircularView/models/CircularView.js +422 -0
- package/dist/CircularView/models/slices.d.ts +27 -27
- package/dist/CircularView/models/slices.js +111 -0
- package/dist/CircularView/models/slices.test.js +83 -0
- package/dist/CircularView/models/viewportVisibleRegion.d.ts +6 -6
- package/dist/CircularView/models/viewportVisibleRegion.js +280 -0
- package/dist/CircularView/models/viewportVisibleRegion.test.js +130 -0
- package/dist/index.d.ts +8 -8
- package/dist/index.js +180 -6
- package/package.json +5 -7
- package/dist/CircularView/models/slices.test.d.ts +0 -1
- package/dist/CircularView/models/viewportVisibleRegion.test.d.ts +0 -1
- package/dist/plugin-circular-view.cjs.development.js +0 -3013
- package/dist/plugin-circular-view.cjs.development.js.map +0 -1
- package/dist/plugin-circular-view.cjs.production.min.js +0 -2
- package/dist/plugin-circular-view.cjs.production.min.js.map +0 -1
- package/dist/plugin-circular-view.esm.js +0 -3004
- package/dist/plugin-circular-view.esm.js.map +0 -1
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/// <reference types="react" />
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import PluginManager from '@jbrowse/core/PluginManager';
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declare const _default: ({ lib, load }: PluginManager) => {
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({ display }: any): JSX.Element;
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propTypes: {
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display: import("prop-types").Validator<any>;
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};
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};
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export default _default;
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/// <reference types="react" />
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import PluginManager from '@jbrowse/core/PluginManager';
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declare const _default: ({ lib, load }: PluginManager) => {
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({ display }: any): JSX.Element;
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propTypes: {
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display: import("prop-types").Validator<any>;
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};
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};
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export default _default;
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"use strict";
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var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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exports["default"] = void 0;
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var _Loading = _interopRequireDefault(require("./Loading"));
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var _DisplayError = _interopRequireDefault(require("./DisplayError"));
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var _RpcRenderedSvgGroup = _interopRequireDefault(require("./RpcRenderedSvgGroup"));
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var _default = function _default(_ref) {
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var lib = _ref.lib,
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load = _ref.load;
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var React = lib.react;
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var _lib$mobxReact = lib['mobx-react'],
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observer = _lib$mobxReact.observer,
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MobxPropTypes = _lib$mobxReact.PropTypes;
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var Loading = load(_Loading["default"]);
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var DisplayError = load(_DisplayError["default"]);
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var RpcRenderedSvgGroup = load(_RpcRenderedSvgGroup["default"]); // eslint-disable-next-line @typescript-eslint/no-explicit-any
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function BaseChordDisplay(_ref2) {
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var display = _ref2.display;
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if (display.error) {
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return /*#__PURE__*/React.createElement(DisplayError, {
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model: display
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});
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}
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if (!display.filled) {
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return /*#__PURE__*/React.createElement(Loading, {
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model: display
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});
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}
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return /*#__PURE__*/React.createElement(RpcRenderedSvgGroup, {
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model: display
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});
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}
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BaseChordDisplay.propTypes = {
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display: MobxPropTypes.observableObject.isRequired
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};
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return observer(BaseChordDisplay);
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};
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exports["default"] = _default;
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declare function _default({ jbrequire }: {
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jbrequire: any;
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}): any;
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export default _default;
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declare function _default({ jbrequire }: {
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jbrequire: any;
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}): any;
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export default _default;
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"use strict";
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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exports["default"] = void 0;
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var _default = function _default(_ref) {
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var jbrequire = _ref.jbrequire;
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var React = jbrequire('react');
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var _jbrequire = jbrequire('@material-ui/core/styles'),
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makeStyles = _jbrequire.makeStyles;
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var _jbrequire2 = jbrequire('mobx-react'),
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observer = _jbrequire2.observer;
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var useStyles = makeStyles({
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errorMessage: {},
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errorBackground: {},
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errorText: {}
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}); // 'repeating-linear-gradient(45deg, transparent, transparent 5px, rgba(255,255,255,.5) 5px, rgba(255,255,255,.5) 10px)',
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var DisplayError = observer(function (_ref2) {
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var _ref2$model = _ref2.model,
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radius = _ref2$model.renderProps.radius,
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error = _ref2$model.error;
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var classes = useStyles();
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return /*#__PURE__*/React.createElement("g", {
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className: classes.errorMessage
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}, /*#__PURE__*/React.createElement("defs", null, /*#__PURE__*/React.createElement("pattern", {
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id: "diagonalHatch",
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width: "10",
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height: "10",
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patternTransform: "rotate(45 0 0)",
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patternUnits: "userSpaceOnUse"
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}, /*#__PURE__*/React.createElement("line", {
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x1: "0",
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y1: "0",
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x2: "0",
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y2: "10",
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style: {
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stroke: 'rgba(255,0,0,0.5)',
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strokeWidth: 10
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}
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}))), /*#__PURE__*/React.createElement("circle", {
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className: classes.errorBackground,
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cx: "0",
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cy: "0",
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r: radius,
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fill: "#ffb4b4"
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}), /*#__PURE__*/React.createElement("circle", {
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className: classes.errorPattern,
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cx: "0",
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cy: "0",
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r: radius,
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fill: "url(#diagonalHatch)"
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}), /*#__PURE__*/React.createElement("text", {
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className: classes.errorText,
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x: "0",
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y: "0",
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transform: "rotate(90 0 0)",
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dominantBaseline: "middle",
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textAnchor: "middle"
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}, String(error)));
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});
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return DisplayError;
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};
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exports["default"] = _default;
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/// <reference types="react" />
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import PluginManager from '@jbrowse/core/PluginManager';
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declare const _default: (pluginManager: PluginManager) => ({ model: { renderProps: { radius }, }, }: {
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model: {
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renderProps: {
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radius: number;
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};
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};
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}) => JSX.Element | null;
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export default _default;
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/// <reference types="react" />
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import PluginManager from '@jbrowse/core/PluginManager';
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declare const _default: (pluginManager: PluginManager) => ({ model: { renderProps: { radius }, }, }: {
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model: {
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renderProps: {
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radius: number;
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};
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};
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}) => JSX.Element | null;
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export default _default;
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"use strict";
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var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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exports["default"] = void 0;
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var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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var _default = function _default(pluginManager) {
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var lib = pluginManager.lib;
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var React = lib.react;
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var useState = React.useState,
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useEffect = React.useEffect;
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var makeStyles = lib['@material-ui/core/styles'].makeStyles;
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var observer = lib['mobx-react'].observer;
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var useStyles = makeStyles(function (theme) {
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var offset = 2;
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var duration = 1.4;
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return {
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path: {
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strokeDasharray: 187,
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strokeDashoffset: 50,
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animation: "$dash ".concat(duration, "s ease-in-out infinite, $colors ").concat(duration * 4, "s ease-in-out infinite")
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},
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'@keyframes colors': {
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'0%': {
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stroke: theme.palette.primary.light
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},
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'25%': {
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stroke: theme.palette.secondary.light
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},
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'50%': {
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stroke: theme.palette.tertiary.light
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},
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'75%': {
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stroke: theme.palette.quaternary.light
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},
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'100%': {
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stroke: theme.palette.primary.light
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}
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},
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'@keyframes dash': {
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'0%': {
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strokeDashoffset: offset
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},
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'50%': {
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strokeDashoffset: offset / 4,
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transform: 'rotate(135deg)'
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},
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'100%': {
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strokeDashoffset: offset,
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transform: 'rotate(720deg)'
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}
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}
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};
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}); // 'repeating-linear-gradient(45deg, transparent, transparent 5px, rgba(255,255,255,.5) 5px, rgba(255,255,255,.5) 10px)',
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var Loading = observer(function (_ref) {
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var radius = _ref.model.renderProps.radius;
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var classes = useStyles(); // only show the loading message after 400ms to prevent excessive flickering
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var _useState = useState(false),
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_useState2 = (0, _slicedToArray2["default"])(_useState, 2),
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shown = _useState2[0],
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setShown = _useState2[1];
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useEffect(function () {
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var timeout = setTimeout(function () {
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return setShown(true);
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}, 400);
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return function () {
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return clearTimeout(timeout);
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};
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});
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return !shown ? null : /*#__PURE__*/React.createElement("g", null, /*#__PURE__*/React.createElement("defs", null, /*#__PURE__*/React.createElement("pattern", {
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id: "diagonalHatch",
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width: "10",
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patternTransform: "rotate(45 0 0)",
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patternUnits: "userSpaceOnUse"
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}, /*#__PURE__*/React.createElement("line", {
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x1: "0",
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y1: "0",
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x2: "0",
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y2: "10",
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style: {
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stroke: 'rgba(255,255,255,0.5)',
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strokeWidth: 10
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}
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}))), /*#__PURE__*/React.createElement("circle", {
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cx: "0",
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cy: "0",
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r: radius,
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fill: "#f1f1f1"
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}), /*#__PURE__*/React.createElement("circle", {
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cx: "0",
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cy: "0",
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r: radius,
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fill: "url(#diagonalHatch)"
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}), /*#__PURE__*/React.createElement("text", {
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x: "0",
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y: "0",
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transform: "rotate(90 0 0)",
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dominantBaseline: "middle",
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textAnchor: "middle"
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}, "Loading\u2026"), /*#__PURE__*/React.createElement("circle", {
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className: classes.path,
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fill: "none",
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strokeWidth: "4",
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strokeLinecap: "round",
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cx: "0",
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cy: "0",
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r: "60"
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@@ -1,3 +1,3 @@
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export { default as BaseChordDisplayComponentFactory } from './components/BaseChordDisplay';
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import RendererType from '@jbrowse/core/pluggableElementTypes/renderers/RendererType';
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export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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} & {
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readonly RenderingComponent: React.FC<{
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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|
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|
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}>;
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|
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readonly DisplayBlurb: React.FC<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
|
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|
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rendererTypeName: string;
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error: unknown;
|
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|
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
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|
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}> | null;
|
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|
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readonly adapterConfig: any;
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|
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readonly parentTrack: any;
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|
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renderProps(): any;
|
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|
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readonly rendererType: any;
|
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|
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readonly DisplayMessageComponent: React.FC<any> | undefined;
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|
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
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|
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readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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|
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regionCannotBeRendered(): undefined;
|
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|
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} & {
|
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setError(error?: unknown): void;
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setRpcDriverName(rpcDriverName: string): void;
|
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|
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reload(): void;
|
|
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|
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} & {
|
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|
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filled: boolean;
|
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|
-
reactElement: React.ReactElement<any, string |
|
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|
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data: undefined;
|
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|
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message: string;
|
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|
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renderingComponent:
|
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70
|
-
refNameMap: Record<string, string> | undefined;
|
|
71
|
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} & {
|
|
72
|
-
onChordClick(feature: Feature): void;
|
|
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|
-
} & {
|
|
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|
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readonly blockDefinitions: any;
|
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|
-
renderProps(): any;
|
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|
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/**
|
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|
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* the pluggable element type object for this diplay's
|
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|
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* renderer
|
|
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|
-
*/
|
|
80
|
-
readonly rendererType: any;
|
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81
|
-
isCompatibleWithRenderer(renderer: RendererType): boolean;
|
|
82
|
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/**
|
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83
|
-
* returns a string feature ID if the globally-selected object
|
|
84
|
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* is probably a feature
|
|
85
|
-
*/
|
|
86
|
-
readonly selectedFeatureId: string | undefined;
|
|
87
|
-
} & {
|
|
88
|
-
renderStarted(): void;
|
|
89
|
-
renderSuccess({ message, data, reactElement, renderingComponent, }: {
|
|
90
|
-
message: string;
|
|
91
|
-
data: any;
|
|
92
|
-
reactElement: React.ReactElement;
|
|
93
|
-
renderingComponent: AnyReactComponentType;
|
|
94
|
-
}): void;
|
|
95
|
-
renderError(error: unknown): void;
|
|
96
|
-
setRefNameMap(refNameMap: Record<string, string>): void;
|
|
97
|
-
} & {
|
|
98
|
-
afterAttach(): void;
|
|
99
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
1
|
+
import RendererType from '@jbrowse/core/pluggableElementTypes/renderers/RendererType';
|
|
2
|
+
import { AnyReactComponentType } from '@jbrowse/core/util';
|
|
3
|
+
import { Feature } from '@jbrowse/core/util/simpleFeature';
|
|
4
|
+
import React from 'react';
|
|
5
|
+
export declare const BaseChordDisplayModel: import("mobx-state-tree").IModelType<{
|
|
6
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
7
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
8
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
9
|
+
} & {
|
|
10
|
+
bezierRadiusRatio: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
11
|
+
assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
12
|
+
}, {
|
|
13
|
+
rendererTypeName: string;
|
|
14
|
+
error: unknown;
|
|
15
|
+
} & {
|
|
16
|
+
readonly RenderingComponent: React.FC<{
|
|
17
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
18
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
19
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
20
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
21
|
+
}> & {
|
|
22
|
+
rendererTypeName: string;
|
|
23
|
+
error: unknown;
|
|
24
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
25
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
26
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
27
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
28
|
+
}, {
|
|
29
|
+
rendererTypeName: string;
|
|
30
|
+
error: unknown;
|
|
31
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
32
|
+
onHorizontalScroll?: Function | undefined;
|
|
33
|
+
blockState?: Record<string, any> | undefined;
|
|
34
|
+
}>;
|
|
35
|
+
readonly DisplayBlurb: React.FC<{
|
|
36
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
37
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
38
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
39
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
40
|
+
}> & {
|
|
41
|
+
rendererTypeName: string;
|
|
42
|
+
error: unknown;
|
|
43
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
44
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
45
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
46
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
47
|
+
}, {
|
|
48
|
+
rendererTypeName: string;
|
|
49
|
+
error: unknown;
|
|
50
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
51
|
+
}> | null;
|
|
52
|
+
readonly adapterConfig: any;
|
|
53
|
+
readonly parentTrack: any;
|
|
54
|
+
renderProps(): any;
|
|
55
|
+
readonly rendererType: any;
|
|
56
|
+
readonly DisplayMessageComponent: React.FC<any> | undefined;
|
|
57
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
58
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
59
|
+
regionCannotBeRendered(): undefined;
|
|
60
|
+
} & {
|
|
61
|
+
setError(error?: unknown): void;
|
|
62
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
63
|
+
reload(): void;
|
|
64
|
+
} & {
|
|
65
|
+
filled: boolean;
|
|
66
|
+
reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
|
|
67
|
+
data: undefined;
|
|
68
|
+
message: string;
|
|
69
|
+
renderingComponent: AnyReactComponentType | undefined;
|
|
70
|
+
refNameMap: Record<string, string> | undefined;
|
|
71
|
+
} & {
|
|
72
|
+
onChordClick(feature: Feature): void;
|
|
73
|
+
} & {
|
|
74
|
+
readonly blockDefinitions: any;
|
|
75
|
+
renderProps(): any;
|
|
76
|
+
/**
|
|
77
|
+
* the pluggable element type object for this diplay's
|
|
78
|
+
* renderer
|
|
79
|
+
*/
|
|
80
|
+
readonly rendererType: any;
|
|
81
|
+
isCompatibleWithRenderer(renderer: RendererType): boolean;
|
|
82
|
+
/**
|
|
83
|
+
* returns a string feature ID if the globally-selected object
|
|
84
|
+
* is probably a feature
|
|
85
|
+
*/
|
|
86
|
+
readonly selectedFeatureId: string | undefined;
|
|
87
|
+
} & {
|
|
88
|
+
renderStarted(): void;
|
|
89
|
+
renderSuccess({ message, data, reactElement, renderingComponent, }: {
|
|
90
|
+
message: string;
|
|
91
|
+
data: any;
|
|
92
|
+
reactElement: React.ReactElement;
|
|
93
|
+
renderingComponent: AnyReactComponentType;
|
|
94
|
+
}): void;
|
|
95
|
+
renderError(error: unknown): void;
|
|
96
|
+
setRefNameMap(refNameMap: Record<string, string>): void;
|
|
97
|
+
} & {
|
|
98
|
+
afterAttach(): void;
|
|
99
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|