@jbrowse/plugin-canvas 4.1.13 → 4.1.15

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Files changed (4) hide show
  1. package/esm/CanvasFeatureRenderer/configSchema.d.ts +3 -3
  2. package/esm/CanvasFeatureRenderer/configSchema2.d.ts +3 -3
  3. package/esm/CanvasFeatureRenderer/peptides/peptideUtils.js +2 -0
  4. package/package.json +5 -5
package/esm/CanvasFeatureRenderer/configSchema.d.ts CHANGED
@@ -39,7 +39,7 @@ declare const CanvasFeatureRenderer: import("@jbrowse/core/configuration/configu
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  };
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  subfeatureLabels: {
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  type: string;
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- model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ model: import("@jbrowse/mobx-state-tree").ISimpleType<"overlay" | "none" | "below">;
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  description: string;
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  defaultValue: string;
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  };
@@ -89,7 +89,7 @@ declare const CanvasFeatureRenderer: import("@jbrowse/core/configuration/configu
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  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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  displayMode: {
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  type: string;
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- model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ model: import("@jbrowse/mobx-state-tree").ISimpleType<"normal" | "collapse" | "compact" | "reducedRepresentation">;
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  description: string;
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  defaultValue: string;
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  };
@@ -123,7 +123,7 @@ declare const CanvasFeatureRenderer: import("@jbrowse/core/configuration/configu
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  };
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  geneGlyphMode: {
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  type: string;
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- model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ model: import("@jbrowse/mobx-state-tree").ISimpleType<"all" | "longest" | "longestCoding">;
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  description: string;
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  defaultValue: string;
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  };
package/esm/CanvasFeatureRenderer/configSchema2.d.ts CHANGED
@@ -39,7 +39,7 @@ declare const SvgFeatureRenderer: import("@jbrowse/core/configuration/configurat
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  };
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  subfeatureLabels: {
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  type: string;
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- model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ model: import("@jbrowse/mobx-state-tree").ISimpleType<"overlay" | "none" | "below">;
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  description: string;
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  defaultValue: string;
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  };
@@ -89,7 +89,7 @@ declare const SvgFeatureRenderer: import("@jbrowse/core/configuration/configurat
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  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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  displayMode: {
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  type: string;
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- model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ model: import("@jbrowse/mobx-state-tree").ISimpleType<"normal" | "collapse" | "compact" | "reducedRepresentation">;
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  description: string;
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  defaultValue: string;
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  };
@@ -123,7 +123,7 @@ declare const SvgFeatureRenderer: import("@jbrowse/core/configuration/configurat
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  };
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  geneGlyphMode: {
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  type: string;
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- model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ model: import("@jbrowse/mobx-state-tree").ISimpleType<"all" | "longest" | "longestCoding">;
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  description: string;
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  defaultValue: string;
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  };
package/esm/CanvasFeatureRenderer/peptides/peptideUtils.js CHANGED
@@ -70,6 +70,7 @@ function extractCDSRegions(feature) {
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  .map((sub) => ({
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  start: sub.get('start') - featureStart,
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  end: sub.get('end') - featureStart,
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+ phase: sub.get('phase') ?? 0,
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  }));
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  }
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  async function fetchTranscriptPeptides(pluginManager, renderProps, transcript) {
@@ -94,6 +95,7 @@ async function fetchTranscriptPeptides(pluginManager, renderProps, transcript) {
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  const seqLen = seq.length;
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  cds = cds
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  .map(region => ({
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+ ...region,
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  start: seqLen - region.end,
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  end: seqLen - region.start,
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  }))
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-canvas",
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- "version": "4.1.13",
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+ "version": "4.1.15",
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  "type": "module",
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  "description": "JBrowse 2 plugin for canvas features",
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  "keywords": [
@@ -21,14 +21,14 @@
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  "esm"
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  ],
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  "dependencies": {
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- "@jbrowse/mobx-state-tree": "^5.5.0",
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- "@mui/material": "^7.3.8",
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+ "@jbrowse/mobx-state-tree": "^5.6.0",
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+ "@mui/material": "^7.3.9",
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  "g2p_mapper": "^2.0.0",
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  "mobx": "^6.15.0",
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  "mobx-react": "^9.2.1",
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  "rxjs": "^7.8.2",
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- "@jbrowse/core": "^4.1.13",
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- "@jbrowse/plugin-linear-genome-view": "^4.1.13"
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+ "@jbrowse/plugin-linear-genome-view": "^4.1.15",
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+ "@jbrowse/core": "^4.1.15"
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  },
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  "peerDependencies": {
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  "react": ">=18.0.0"