@jbrowse/plugin-breakpoint-split-view 3.6.5 → 4.0.0

package/dist/BreakpointSplitView/model.d.ts

@@ -1,342 +0,0 @@
-import type { ExportSvgOptions } from './types';
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { Feature } from '@jbrowse/core/util';
-import type { Instance } from 'mobx-state-tree';
-export default function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-} & {
-    type: import("mobx-state-tree").ISimpleType<"BreakpointSplitView">;
-    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-    trackSelectorType: import("mobx-state-tree").IType<string | undefined, string, string>;
-    showIntraviewLinks: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    linkViews: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    interactiveOverlay: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    views: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
-    }, {
-        width: number;
-    } & {
-        menuItems(): import("@jbrowse/core/ui").MenuItem[];
-    } & {
-        setDisplayName(name: string): void;
-        setWidth(newWidth: number): void;
-        setMinimized(flag: boolean): void;
-    } & {
-        volatileWidth: number | undefined;
-        minimumBlockWidth: number;
-        draggingTrackId: undefined | string;
-        volatileError: unknown;
-        afterDisplayedRegionsSetCallbacks: (() => void)[];
-        scaleFactor: number;
-        trackRefs: Record<string, HTMLDivElement>;
-        coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-        coarseTotalBp: number;
-        leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
-        rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
-    } & {
-        readonly pinnedTracks: any[];
-        readonly unpinnedTracks: any[];
-        readonly trackLabelsSetting: any;
-        readonly width: number;
-        readonly interRegionPaddingWidth: number;
-        readonly assemblyNames: string[];
-        readonly assemblyDisplayNames: string[];
-        readonly isTopLevelView: boolean;
-        readonly stickyViewHeaders: boolean;
-        readonly rubberbandTop: number;
-        readonly pinnedTracksTop: number;
-    } & {
-        scaleBarDisplayPrefix(): string | undefined;
-        MiniControlsComponent(): React.FC<any>;
-        HeaderComponent(): React.FC<any>;
-        readonly assembliesNotFound: string | undefined;
-        readonly assemblyErrors: string;
-        readonly assembliesInitialized: boolean;
-        readonly initialized: boolean;
-        readonly hasDisplayedRegions: boolean;
-        readonly scaleBarHeight: number;
-        readonly headerHeight: number;
-        readonly trackHeights: number;
-        readonly trackHeightsWithResizeHandles: number;
-        readonly height: number;
-        readonly totalBp: number;
-        readonly maxBpPerPx: number;
-        readonly minBpPerPx: number;
-        readonly error: unknown;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-        readonly displayedRegionsTotalPx: number;
-        renderProps(): any;
-        searchScope(assemblyName: string): {
-            assemblyName: string;
-            includeAggregateIndexes: boolean;
-            tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-        };
-        getTrack(id: string): any;
-        rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-        rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
-        readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
-    } & {
-        setShowTrackOutlines(arg: boolean): void;
-        setColorByCDS(flag: boolean): void;
-        setShowCytobands(flag: boolean): void;
-        setWidth(newWidth: number): void;
-        setError(error: unknown): void;
-        setHideHeader(b: boolean): void;
-        setHideHeaderOverview(b: boolean): void;
-        setHideNoTracksActive(b: boolean): void;
-        setShowGridlines(b: boolean): void;
-        addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType): void;
-        setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[]): void;
-        removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType): void;
-        scrollTo(offsetPx: number): number;
-        zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
-        setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
-        setNewView(bpPerPx: number, offsetPx: number): void;
-        horizontallyFlip(): void;
-        showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-        hideTrack(trackId: string): number;
-    } & {
-        moveTrackDown(id: string): void;
-        moveTrackUp(id: string): void;
-        moveTrackToTop(id: string): void;
-        moveTrackToBottom(id: string): void;
-        moveTrack(movingId: string, targetId: string): void;
-        toggleTrack(trackId: string): boolean;
-        setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
-        setShowCenterLine(b: boolean): void;
-        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        activateTrackSelector(): import("@jbrowse/core/util").Widget;
-        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): {
-            start: number;
-            end: number;
-            type: string;
-            regionNumber?: number;
-            reversed?: boolean;
-            refName: string;
-            assemblyName: string;
-            key: string;
-            offsetPx: number;
-            widthPx: number;
-            variant?: string;
-            isLeftEndOfDisplayedRegion?: boolean;
-        }[];
-        afterDisplayedRegionsSet(cb: () => void): void;
-        horizontalScroll(distance: number): number;
-        center(): void;
-        showAllRegions(): void;
-        showAllRegionsInAssembly(assemblyName?: string): void;
-        setDraggingTrackId(idx?: string): void;
-        setScaleFactor(factor: number): void;
-        clearView(): void;
-        setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState): void;
-        exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").ExportSvgOptions): Promise<void>;
-    } & {
-        slide: (viewWidths: number) => void;
-    } & {
-        zoom: (targetBpPerPx: number) => void;
-    } & {
-        readonly canShowCytobands: boolean;
-        readonly showCytobands: boolean;
-        readonly anyCytobandsExist: boolean;
-        readonly cytobandOffset: number;
-    } & {
-        menuItems(): import("@jbrowse/core/ui").MenuItem[];
-    } & {
-        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-        readonly visibleLocStrings: string;
-        readonly coarseVisibleLocStrings: string;
-    } & {
-        setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-    } & {
-        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
-        navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
-        navToSearchString({ input, assembly, }: {
-            input: string;
-            assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
-        }): Promise<void>;
-        navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
-        navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
-        navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
-        navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
-    } & {
-        rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-        bpToPx({ refName, coord, regionNumber, }: {
-            refName: string;
-            coord: number;
-            regionNumber?: number;
-        }): {
-            index: number;
-            offsetPx: number;
-        } | undefined;
-        centerAt(coord: number, refName: string, regionNumber?: number): void;
-        pxToBp(px: number): {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed?: boolean;
-        };
-        readonly centerLineInfo: {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed?: boolean;
-        } | undefined;
-    } & {
-        afterCreate(): void;
-        afterAttach(): void;
-    }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
-    }>>, {
-        id: string;
-        type: string;
-        displayName: string | undefined;
-        tracks: any[];
-        minimized: boolean;
-        offsetPx: number;
-        bpPerPx: number;
-        displayedRegions: import("@jbrowse/core/util").Region[];
-        hideHeader: boolean;
-        hideHeaderOverview: boolean;
-        hideNoTracksActive: boolean;
-        trackSelectorType: string;
-        showCenterLine: boolean;
-        showCytobandsSetting: boolean;
-        trackLabels: string;
-        showGridlines: boolean;
-        highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[];
-        colorByCDS: boolean;
-        showTrackOutlines: boolean;
-    }>>;
-}, {
-    width: number;
-} & {
-    menuItems(): import("@jbrowse/core/ui").MenuItem[];
-} & {
-    setDisplayName(name: string): void;
-    setWidth(newWidth: number): void;
-    setMinimized(flag: boolean): void;
-} & {
-    width: number;
-    matchedTrackFeatures: Record<string, Feature[][]>;
-} & {
-    exportSvg(opts?: ExportSvgOptions): Promise<void>;
-} & {
-    readonly matchedTracks: (import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>) | {
-        configuration: {
-            trackId: string;
-        };
-    }[];
-    getMatchedTracks(trackConfigId: string): any[];
-    hasTranslocations(trackConfigId: string): Feature | undefined;
-    hasPairedFeatures(trackConfigId: string): Feature | undefined;
-    getTrackFeatures(trackConfigId: string): Map<string, Feature>;
-    getMatchedFeaturesInLayout(trackConfigId: string, features: Feature[][]): {
-        feature: Feature;
-        layout: import("./types").LayoutRecord | undefined;
-        level: number;
-        clipPos: number;
-    }[][];
-} & {
-    afterAttach(): void;
-    onSubviewAction(actionName: string, path: string, args?: unknown[]): void;
-    setWidth(newWidth: number): void;
-    setInteractiveOverlay(arg: boolean): void;
-    setShowIntraviewLinks(arg: boolean): void;
-    setLinkViews(arg: boolean): void;
-    setMatchedTrackFeatures(obj: Record<string, Feature[][]>): void;
-    reverseViewOrder(): void;
-} & {
-    afterAttach(): void;
-    menuItems(): ({
-        label: string;
-        subMenu: import("@jbrowse/core/ui").MenuItem[];
-    } | {
-        label: string;
-        onClick: () => void;
-        type?: undefined;
-        checked?: undefined;
-        icon?: undefined;
-    } | {
-        label: string;
-        type: string;
-        checked: boolean;
-        onClick: () => void;
-        icon?: undefined;
-    } | {
-        label: string;
-        type: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        checked: boolean;
-        onClick: () => void;
-    } | {
-        label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-        type?: undefined;
-        checked?: undefined;
-    })[];
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export type BreakpointViewStateModel = ReturnType<typeof stateModelFactory>;
-export type BreakpointViewModel = Instance<BreakpointViewStateModel>;

package/dist/BreakpointSplitView/model.js

@@ -1,244 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = stateModelFactory;
-const react_1 = require("react");
-const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
-const util_1 = require("@jbrowse/core/util");
-const Link_1 = __importDefault(require("@mui/icons-material/Link"));
-const PhotoCamera_1 = __importDefault(require("@mui/icons-material/PhotoCamera"));
-const file_saver_1 = require("file-saver");
-const mobx_1 = require("mobx");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const getClip_1 = require("./getClip");
-const util_2 = require("./util");
-const ExportSvgDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/ExportSvgDialog'))));
-function stateModelFactory(pluginManager) {
-    const defaultHeight = 400;
-    return mobx_state_tree_1.types
-        .compose('BreakpointSplitView', models_1.BaseViewModel, mobx_state_tree_1.types.model({
-        type: mobx_state_tree_1.types.literal('BreakpointSplitView'),
-        height: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.number, defaultHeight),
-        trackSelectorType: 'hierarchical',
-        showIntraviewLinks: true,
-        linkViews: false,
-        interactiveOverlay: true,
-        views: mobx_state_tree_1.types.array(pluginManager.getViewType('LinearGenomeView')
-            .stateModel),
-    }))
-        .volatile(() => ({
-        width: 800,
-        matchedTrackFeatures: {},
-    }))
-        .views(self => ({
-        async exportSvg(opts = {}) {
-            const { renderToSvg } = await Promise.resolve().then(() => __importStar(require('./svgcomponents/SVGBreakpointSplitView')));
-            const html = await renderToSvg(self, opts);
-            const blob = new Blob([html], { type: 'image/svg+xml' });
-            (0, file_saver_1.saveAs)(blob, opts.filename || 'image.svg');
-        },
-    }))
-        .views(self => ({
-        get matchedTracks() {
-            return self.views.length === 1
-                ? self.views[0].tracks
-                : (0, util_2.intersect)(elt => elt.configuration.trackId, ...self.views.map(view => view.tracks));
-        },
-        getMatchedTracks(trackConfigId) {
-            return self.views
-                .map(view => view.getTrack(trackConfigId))
-                .filter(f => !!f);
-        },
-        hasTranslocations(trackConfigId) {
-            return [...this.getTrackFeatures(trackConfigId).values()].find(f => f.get('type') === 'translocation');
-        },
-        hasPairedFeatures(trackConfigId) {
-            return [...this.getTrackFeatures(trackConfigId).values()].find(f => f.get('type') === 'paired_feature');
-        },
-        getTrackFeatures(trackConfigId) {
-            var _a;
-            return new Map((_a = self.matchedTrackFeatures[trackConfigId]) === null || _a === void 0 ? void 0 : _a.flat().map(f => [f.id(), f]));
-        },
-        getMatchedFeaturesInLayout(trackConfigId, features) {
-            const tracks = this.getMatchedTracks(trackConfigId);
-            return features.map(c => c
-                .map(feature => {
-                const level = tracks.findIndex(track => (0, util_2.calc)(track, feature));
-                return level !== -1
-                    ? {
-                        feature,
-                        layout: (0, util_2.calc)(tracks[level], feature),
-                        level,
-                        clipPos: (0, getClip_1.getClip)(feature.get('CIGAR'), feature.get('strand')),
-                    }
-                    : undefined;
-            })
-                .filter(util_1.notEmpty));
-        },
-    }))
-        .actions(self => ({
-        afterAttach() {
-            (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_state_tree_1.onAction)(self, ({ name, path, args, }) => {
-                if (self.linkViews) {
-                    const actions = [
-                        'horizontalScroll',
-                        'zoomTo',
-                        'setScaleFactor',
-                        'showTrack',
-                        'toggleTrack',
-                        'hideTrack',
-                        'setTrackLabels',
-                        'toggleCenterLine',
-                    ];
-                    if (actions.includes(name) && path) {
-                        this.onSubviewAction(name, path, args);
-                    }
-                }
-            }));
-        },
-        onSubviewAction(actionName, path, args) {
-            for (const view of self.views) {
-                const ret = (0, mobx_state_tree_1.getPath)(view);
-                if (!ret.endsWith(path)) {
-                    view[actionName](args === null || args === void 0 ? void 0 : args[0]);
-                }
-            }
-        },
-        setWidth(newWidth) {
-            self.width = newWidth;
-            for (const v of self.views) {
-                v.setWidth(newWidth);
-            }
-        },
-        setInteractiveOverlay(arg) {
-            self.interactiveOverlay = arg;
-        },
-        setShowIntraviewLinks(arg) {
-            self.showIntraviewLinks = arg;
-        },
-        setLinkViews(arg) {
-            self.linkViews = arg;
-        },
-        setMatchedTrackFeatures(obj) {
-            self.matchedTrackFeatures = obj;
-        },
-        reverseViewOrder() {
-            self.views.reverse();
-        },
-    }))
-        .actions(self => ({
-        afterAttach() {
-            (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(async () => {
-                try {
-                    if (!self.views.every(view => view.initialized)) {
-                        return;
-                    }
-                    if (self.matchedTracks.some(track => { var _a, _b; return (_b = (_a = track.displays[0]).notReady) === null || _b === void 0 ? void 0 : _b.call(_a); })) {
-                        return;
-                    }
-                    self.setMatchedTrackFeatures(Object.fromEntries(await Promise.all(self.matchedTracks.map(async (track) => [
-                        track.configuration.trackId,
-                        await (0, util_2.getBlockFeatures)(self, track),
-                    ]))));
-                }
-                catch (e) {
-                    console.error(e);
-                    (0, util_1.getSession)(self).notifyError(`${e}`, e);
-                }
-            }));
-        },
-        menuItems() {
-            return [
-                ...self.views
-                    .map((view, idx) => [idx, view.menuItems()])
-                    .map(f => ({
-                    label: `Row ${f[0] + 1} view menu`,
-                    subMenu: f[1],
-                })),
-                ...(self.views.length > 1
-                    ? [
-                        {
-                            label: 'Reverse view order',
-                            onClick: () => {
-                                self.reverseViewOrder();
-                            },
-                        },
-                    ]
-                    : []),
-                {
-                    label: 'Show intra-view links',
-                    type: 'checkbox',
-                    checked: self.showIntraviewLinks,
-                    onClick: () => {
-                        self.setShowIntraviewLinks(!self.showIntraviewLinks);
-                    },
-                },
-                {
-                    label: 'Allow clicking alignment squiggles?',
-                    type: 'checkbox',
-                    checked: self.interactiveOverlay,
-                    onClick: () => {
-                        self.setInteractiveOverlay(!self.interactiveOverlay);
-                    },
-                },
-                {
-                    label: 'Link views',
-                    type: 'checkbox',
-                    icon: Link_1.default,
-                    checked: self.linkViews,
-                    onClick: () => {
-                        self.setLinkViews(!self.linkViews);
-                    },
-                },
-                {
-                    label: 'Export SVG',
-                    icon: PhotoCamera_1.default,
-                    onClick: () => {
-                        (0, util_1.getSession)(self).queueDialog(handleClose => [
-                            ExportSvgDialog,
-                            {
-                                model: self,
-                                handleClose,
-                            },
-                        ]);
-                    },
-                },
-            ];
-        },
-    }));
-}

package/dist/BreakpointSplitView/svgcomponents/SVGBackground.d.ts

@@ -1,5 +0,0 @@
-export default function SVGBackground({ width, height, shift, }: {
-    width: number;
-    height: number;
-    shift: number;
-}): import("react/jsx-runtime").JSX.Element;

package/dist/BreakpointSplitView/svgcomponents/SVGBackground.js

@@ -1,10 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = SVGBackground;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-function SVGBackground({ width, height, shift, }) {
-    const theme = (0, material_1.useTheme)();
-    return ((0, jsx_runtime_1.jsx)("rect", { width: width + shift * 2, height: height, fill: (0, util_1.stripAlpha)(theme.palette.background.default) }));
-}

package/dist/BreakpointSplitView/svgcomponents/SVGBreakpointSplitView.d.ts

@@ -1,5 +0,0 @@
-import type { BreakpointViewModel } from '../model';
-import type { ExportSvgOptions } from '../types';
-type BSV = BreakpointViewModel;
-export declare function renderToSvg(model: BSV, opts: ExportSvgOptions): Promise<string>;
-export {};

package/dist/BreakpointSplitView/svgcomponents/SVGBreakpointSplitView.js

@@ -1,41 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.renderToSvg = renderToSvg;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const material_1 = require("@mui/material");
-const mobx_1 = require("mobx");
-const SVGBackground_1 = __importDefault(require("./SVGBackground"));
-const util_2 = require("./util");
-const Overlay_1 = __importDefault(require("../components/Overlay"));
-async function renderToSvg(model, opts) {
-    var _a;
-    const { textHeight = 18, headerHeight = 30, rulerHeight = 30, fontSize = 13, trackLabels = 'offset', Wrapper = ({ children }) => children, themeName = 'default', } = opts;
-    const session = (0, util_1.getSession)(model);
-    const theme = (_a = session.allThemes) === null || _a === void 0 ? void 0 : _a.call(session)[themeName];
-    const { width, views } = model;
-    const shift = 50;
-    const offset = headerHeight + rulerHeight;
-    const heights = views.map(v => (0, plugin_linear_genome_view_1.totalHeight)(v.tracks, textHeight, trackLabels) + offset);
-    const totalHeightSvg = (0, util_1.sum)(heights) + 100;
-    const displayResults = await Promise.all(views.map(async (view) => ({
-        view,
-        data: await Promise.all(view.tracks.map(async (track) => {
-            const d = track.displays[0];
-            await (0, mobx_1.when)(() => (d.ready !== undefined ? d.ready : true));
-            return { track, result: await d.renderSvg({ ...opts, theme }) };
-        })),
-    })));
-    const trackLabelMaxLen = (0, util_2.getTrackNameMaxLen)(views, fontSize, session) + 40;
-    const trackLabelOffset = trackLabels === 'left' ? trackLabelMaxLen : 0;
-    const textOffset = trackLabels === 'offset' ? textHeight : 0;
-    const trackOffsets = views.map((view, idx) => (0, util_2.getTrackOffsets)(view, textOffset, fontSize + (idx > 0 ? heights[idx - 1] : 0) + offset));
-    const w = width + trackLabelOffset;
-    const t = (0, ui_1.createJBrowseTheme)(theme);
-    return (0, util_1.renderToStaticMarkup)((0, jsx_runtime_1.jsx)(material_1.ThemeProvider, { theme: t, children: (0, jsx_runtime_1.jsx)(Wrapper, { children: (0, jsx_runtime_1.jsxs)("svg", { width: width, height: totalHeightSvg, xmlns: "http://www.w3.org/2000/svg", xmlnsXlink: "http://www.w3.org/1999/xlink", viewBox: [0, 0, w + shift * 2, totalHeightSvg].toString(), children: [(0, jsx_runtime_1.jsx)(SVGBackground_1.default, { width: w, height: totalHeightSvg, shift: shift }), views[0] ? ((0, jsx_runtime_1.jsxs)("g", { transform: `translate(${shift} ${fontSize})`, children: [(0, jsx_runtime_1.jsxs)("g", { transform: `translate(${trackLabelOffset})`, children: [(0, jsx_runtime_1.jsx)("text", { x: 0, fontSize: fontSize, fill: t.palette.text.primary, children: views[0].assemblyNames.join(', ') }), (0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.SVGRuler, { model: displayResults[0].view, fontSize: fontSize })] }), (0, jsx_runtime_1.jsx)("g", { transform: `translate(0 ${offset})`, children: (0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.SVGTracks, { textHeight: textHeight, trackLabels: trackLabels, fontSize: fontSize, model: displayResults[0].view, displayResults: displayResults[0].data, trackLabelOffset: trackLabelOffset }) })] })) : null, views[1] ? ((0, jsx_runtime_1.jsxs)("g", { transform: `translate(${shift} ${fontSize + heights[0]})`, children: [(0, jsx_runtime_1.jsxs)("g", { transform: `translate(${trackLabelOffset})`, children: [(0, jsx_runtime_1.jsx)("text", { x: 0, fontSize: fontSize, fill: t.palette.text.primary, children: views[1].assemblyNames.join(', ') }), (0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.SVGRuler, { model: displayResults[1].view, fontSize: fontSize })] }), (0, jsx_runtime_1.jsx)("g", { transform: `translate(0 ${offset})`, children: (0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.SVGTracks, { textHeight: textHeight, trackLabels: trackLabels, fontSize: fontSize, model: displayResults[1].view, displayResults: displayResults[1].data, trackLabelOffset: trackLabelOffset }) })] })) : null, (0, jsx_runtime_1.jsx)("defs", { children: (0, jsx_runtime_1.jsx)("clipPath", { id: "clip-bsv", children: (0, jsx_runtime_1.jsx)("rect", { x: 0, y: 0, width: width, height: totalHeightSvg }) }) }), (0, jsx_runtime_1.jsx)("g", { transform: `translate(${trackLabelOffset + shift})`, clipPath: "url(#clip-bsv)", children: model.matchedTracks.map(track => ((0, jsx_runtime_1.jsx)(Overlay_1.default, { parentRef: { current: null }, model: model, trackId: track.configuration.trackId, getTrackYPosOverride: (id, level) => trackOffsets[level][id] }, track.configuration.trackId))) })] }) }) }));
-}

package/dist/BreakpointSplitView/svgcomponents/util.d.ts

@@ -1,4 +0,0 @@
-import type { AbstractSessionModel } from '@jbrowse/core/util';
-import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
-export declare function getTrackNameMaxLen(views: LinearGenomeViewModel[], fontSize: number, session: AbstractSessionModel): number;
-export declare function getTrackOffsets(view: LinearGenomeViewModel, textOffset: number, extra?: number): Record<string, number>;