@jbrowse/plugin-blat 5.0.0-beta.7 → 5.0.0-beta.9

package/esm/UcscResultsWidget/configSchema.d.ts

@@ -1 +1 @@
-export declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+export declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;

package/esm/blatQuery.js

@@ -172,17 +172,21 @@ export function buildBlatBody({ db, seq, apiKey, }) {
 export class BlatChallengeError extends Error {
     name = 'BlatChallengeError';
 }
-// Markers on a Cloudflare Turnstile challenge page. Every marker has to be
-// specific to the challenge itself: a bare `cf-`, `captcha` or `challenge` also
-// matches an ordinary UCSC page, whose standard nav links to
-// FAQdownloads.html#CAPTCHA and whose scripts load from challenges.cloudflare.com.
-// Those two words made a failed parse of a perfectly good result page report
-// itself as a CAPTCHA, sending the user off to solve one that wasn't there.
+// Markers on a Cloudflare Turnstile challenge page. Every marker has to name
+// the widget being MOUNTED, never a page that merely mentions it: a bare `cf-`,
+// `captcha` or `challenge` matches an ordinary UCSC page, whose nav links to
+// FAQdownloads.html#CAPTCHA, and a bare `turnstile` matches one too, because
+// UCSC's Content-Security-Policy whitelists
+// `challenges.cloudflare.com/turnstile/v0/api.js` on every page it serves —
+// including the honest "No matches" that hgPcr answers a primer pair with.
+// Each of those words in turn sent a user off to solve a CAPTCHA that was not
+// there. `turnstile.render(` is the call that puts one on screen, and the
+// challenge page is the only page that makes it.
 //
 // Duplicated in `products/aws/blat-proxy/src/routes.ts`, which decides the same thing
 // about the same pages server-side. The proxy is a standalone package and cannot
 // import this one, so the copies are deliberate: narrow one and narrow both.
-const CHALLENGE_MARKERS = /turnstile|cf[-_]chl/i;
+const CHALLENGE_MARKERS = /turnstile\s*\.\s*render|cf[-_](?:chl|turnstile)/i;
 export function isChallengePage(text) {
     return CHALLENGE_MARKERS.test(text);
 }

package/esm/ucscShared.js

@@ -11,12 +11,14 @@ function isNavigableView(view) {
 // jb2hubs stamps the UCSC db on the assembly's sequence.metadata. Its presence
 // is also the one positive proof that UCSC can search the assembly, so the
 // dialogs read it directly to decide whether to warn.
+// Annotated rather than inferred: the path runs past `metadata`, a `frozen`
+// slot, so the read is into arbitrary JSON and the path type stops deriving
+// anything at that segment.
 export function ucscDbStamp(session, name) {
     const assembly = session.assemblyManager.get(name);
-    const stamped = assembly
+    return assembly
         ? getConf(assembly, ['sequence', 'metadata', 'blatDb'])
         : undefined;
-    return stamped;
 }
 // Prefers the stamp, falling back to the static alias map for assemblies whose
 // configs predate it. Shared by the BLAT and in-silico PCR dialogs.
@@ -107,12 +109,12 @@ export async function addResultTrack({ session, assembly, features, trackIdPrefi
     // a drawer — an embedded component may be built without one — so the guard is
     // not optional.
     if (isSessionModelWithWidgets(session)) {
-        session.showWidget(session.addWidget('UcscResultsWidget', 'ucscResults', {
+        session.openWidget('UcscResultsWidget', 'ucscResults', {
             features,
             assembly,
             trackName,
             resultNoun,
-        }));
+        });
     }
     // #endregion
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-blat",
-  "version": "5.0.0-beta.7",
+  "version": "5.0.0-beta.9",
   "type": "module",
   "description": "JBrowse 2 UCSC BLAT client",
   "keywords": [
@@ -24,12 +24,12 @@
     "esbuild": "^0.28.2"
   },
   "dependencies": {
-    "@jbrowse/mobx-state-tree": "^6.5.1",
+    "@jbrowse/mobx-state-tree": "^6.5.2",
     "@mui/icons-material": "^9.4.0",
     "@mui/material": "^9.4.0",
     "mobx": "^7.0.3",
     "mobx-react": "^10.0.2",
-    "@jbrowse/core": "^5.0.0-beta.7"
+    "@jbrowse/core": "^5.0.0-beta.9"
   },
   "peerDependencies": {
     "react": ">=19.0.0"