@jbrowse/plugin-blat 4.3.0

package/LICENSE

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package/esm/BlatDialog.d.ts

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+import type { UcscHost } from './ucscShared.ts';
+declare const BlatDialog: ({ session, handleClose, }: {
+    session: UcscHost;
+    handleClose: () => void;
+}) => import("react").JSX.Element;
+export default BlatDialog;

package/esm/BlatDialog.js

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+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { useState } from 'react';
+import { Dialog } from '@jbrowse/core/ui';
+import { DialogContent } from '@mui/material';
+import { observer } from 'mobx-react';
+import MonospaceTextField from './MonospaceTextField.js';
+import UcscQueryActions from './UcscQueryActions.js';
+import UcscQueryFields from './UcscQueryFields.js';
+import UcscQueryStatus from './UcscQueryStatus.js';
+import { DEFAULT_BLAT_URL, UCSC_BLAT_URL, MAXIMUM_BLAT_LENGTH, MAXIMUM_BLAT_QUERIES, MINIMUM_BLAT_LENGTH, buildBlatBody, fastaRecordCount, parseBlatResponse, pslToFeatures, queryLabel, stripFasta, } from './blatQuery.js';
+import { parseQuerySequences, pslToSam } from './pslToSam.js';
+import { canRenderAlignments } from './ucscShared.js';
+import { runUcscFetch, useUcscQuery } from './useUcscQuery.js';
+const BlatDialog = observer(function BlatDialog({ session, handleClose, }) {
+    const query = useUcscQuery({
+        session,
+        handleClose,
+        defaultUrl: DEFAULT_BLAT_URL,
+        directUrl: UCSC_BLAT_URL,
+    });
+    const { db, urlBase, fallbackUrl, apiKey } = query;
+    const [seq, setSeq] = useState('');
+    const residues = stripFasta(seq);
+    const queryCount = fastaRecordCount(seq);
+    const tooShort = residues.length < MINIMUM_BLAT_LENGTH;
+    const tooLong = residues.length > MAXIMUM_BLAT_LENGTH;
+    const tooMany = queryCount > MAXIMUM_BLAT_QUERIES;
+    const seqError = tooLong
+        ? `Sequence is ${residues.length.toLocaleString()} bp; UCSC BLAT is limited to ${MAXIMUM_BLAT_LENGTH.toLocaleString()} bp`
+        : tooMany
+            ? `${queryCount} sequences; UCSC BLAT is limited to ${MAXIMUM_BLAT_QUERIES} per query`
+            : tooShort && residues
+                ? `Sequence must be at least ${MINIMUM_BLAT_LENGTH} bp`
+                : '';
+    async function handleSubmit() {
+        const label = queryLabel(seq);
+        await query.runQuery({
+            // PSL states each hit as aligned blocks in query and target coordinates,
+            // which is a CIGAR alignment: converting to SAM and showing it in an
+            // alignments track draws the hit's exon-like blocks, its indels, the
+            // unaligned ends of the query as soft clips, and — since the submitted
+            // sequence is right here — its mismatches against the reference.
+            fetchResult: async () => {
+                const rows = await runUcscFetch({
+                    urlBase,
+                    fallbackUrl,
+                    body: buildBlatBody({ db, seq: seq.trim(), apiKey }),
+                    parse: parseBlatResponse,
+                });
+                return {
+                    features: pslToFeatures(rows),
+                    // an older host has no SamAdapter; addResultTrack then falls back to
+                    // drawing the hits' block structure as a plain feature track
+                    trackConf: canRenderAlignments(session)
+                        ? {
+                            type: 'AlignmentsTrack',
+                            adapter: {
+                                type: 'SamAdapter',
+                                samText: pslToSam(rows, parseQuerySequences(seq)),
+                            },
+                            // A handful of hits has no depth to read, so the coverage band is 45
+                            // pixels saying "1" over the one place the query landed. The hits
+                            // themselves are the answer here, unlike a sequencing pileup.
+                            //
+                            // heightMode 'grow' would also be the natural fit (the content is a
+                            // few hits of known size, so the fixed lane is mostly empty), but a
+                            // single-hit track grown to its content comes out with the read
+                            // clipped by the bottom edge of the view. Left off until that is
+                            // understood.
+                            displayDefaults: { showCoverage: false },
+                        }
+                        : undefined,
+                };
+            },
+            trackIdPrefix: 'blat',
+            trackName: queryCount > 1 ? `BLAT ${label} +${queryCount - 1}` : `BLAT ${label}`,
+            emptyMessage: `No BLAT hits found in ${db}`,
+        });
+    }
+    return (_jsxs(Dialog, { open: true, 
+        // the sequence box is the dialog, and a pasted read or FASTA line wraps
+        // every 40-odd bases at the default 600px — wide enough to read a
+        // sequence without horizontal hunting
+        maxWidth: "md", fullWidth: true, title: "BLAT search (UCSC)", onClose: () => {
+            handleClose();
+        }, children: [_jsxs(DialogContent, { style: { display: 'flex', flexDirection: 'column', gap: 12 }, children: [_jsx(MonospaceTextField, { label: "Sequence", value: seq, onChange: event => {
+                            setSeq(event.target.value);
+                        }, multiline: true, minRows: 6, maxRows: 14, autoFocus: true, placeholder: "Paste a DNA sequence or FASTA to locate it in the genome", error: !!seqError, helperText: seqError ||
+                            'DNA, or FASTA with up to 25 records, 25 kb total. Hits are added as a track, and listed best-first in a panel where each one is a link.' }), _jsx(UcscQueryFields, { session: session, query: query, urlLabel: "BLAT server URL" }), _jsx(UcscQueryStatus, { query: query })] }), _jsx(UcscQueryActions, { query: query, submitDisabled: tooShort || tooLong || tooMany || !db, onSubmit: () => void handleSubmit(), onCancel: () => {
+                    handleClose();
+                } })] }));
+});
+export default BlatDialog;

package/esm/IsPcrDialog.d.ts

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+import type { UcscHost } from './ucscShared.ts';
+declare const IsPcrDialog: ({ session, handleClose, }: {
+    session: UcscHost;
+    handleClose: () => void;
+}) => import("react").JSX.Element;
+export default IsPcrDialog;

package/esm/IsPcrDialog.js

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+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { useState } from 'react';
+import { Dialog, NumberTextField } from '@jbrowse/core/ui';
+import { DialogContent, Typography } from '@mui/material';
+import { observer } from 'mobx-react';
+import MonospaceTextField from './MonospaceTextField.js';
+import UcscQueryActions from './UcscQueryActions.js';
+import UcscQueryFields from './UcscQueryFields.js';
+import UcscQueryStatus from './UcscQueryStatus.js';
+import { DEFAULT_ISPCR_URL, UCSC_ISPCR_URL, DEFAULT_MAX_PRODUCT_SIZE, MINIMUM_PRIMER_LENGTH, buildIsPcrBody, parseIsPcrProducts, pcrProductsToFeatures, } from './ispcrQuery.js';
+import { ispcrToSam } from './ispcrToSam.js';
+import { canRenderAlignments } from './ucscShared.js';
+import { runUcscFetch, useUcscQuery } from './useUcscQuery.js';
+function cleanPrimer(seq) {
+    return seq.replaceAll(/\s/g, '').toUpperCase();
+}
+const IsPcrDialog = observer(function IsPcrDialog({ session, handleClose, }) {
+    const query = useUcscQuery({
+        session,
+        handleClose,
+        defaultUrl: DEFAULT_ISPCR_URL,
+        directUrl: UCSC_ISPCR_URL,
+    });
+    const { db, urlBase, fallbackUrl, apiKey } = query;
+    const [forwardPrimer, setForwardPrimer] = useState('');
+    const [reversePrimer, setReversePrimer] = useState('');
+    // NumberTextField emits undefined for an empty or out-of-bounds entry, which
+    // is what gates submit — no local parse/validate needed
+    const [maxProductSize, setMaxProductSize] = useState(DEFAULT_MAX_PRODUCT_SIZE);
+    const fwd = cleanPrimer(forwardPrimer);
+    const rev = cleanPrimer(reversePrimer);
+    const tooShort = fwd.length < MINIMUM_PRIMER_LENGTH || rev.length < MINIMUM_PRIMER_LENGTH;
+    async function handleSubmit() {
+        // submit is disabled while the size is undefined, so this only narrows the
+        // type rather than guarding a reachable state
+        if (maxProductSize !== undefined) {
+            await query.runQuery({
+                // A product is a primer pair with an insert between them, which is a read
+                // pair: shown as an alignments track with view-as-pairs on, each product
+                // draws as the two primers facing inward joined by the amplicon. The
+                // primers' own bases come along, so a base where one disagrees with the
+                // template draws as a mismatch rather than being assumed away. The size,
+                // which is the band on a gel, is TLEN and is reported by the results panel
+                // — the pair glyph itself carries no size label.
+                fetchResult: async () => {
+                    const products = await runUcscFetch({
+                        urlBase,
+                        fallbackUrl,
+                        body: buildIsPcrBody({
+                            db,
+                            forwardPrimer: fwd,
+                            reversePrimer: rev,
+                            maxProductSize,
+                            apiKey,
+                        }),
+                        parse: parseIsPcrProducts,
+                    });
+                    return {
+                        features: pcrProductsToFeatures(products),
+                        // an older host has no SamAdapter; the products then draw as plain
+                        // features rather than as the read pairs this configures
+                        trackConf: canRenderAlignments(session)
+                            ? {
+                                type: 'AlignmentsTrack',
+                                adapter: {
+                                    type: 'SamAdapter',
+                                    samText: ispcrToSam(products),
+                                },
+                                // a handful of products has no depth to read, and the pair glyph is
+                                // the whole point, so it is on rather than a menu step away
+                                displayDefaults: {
+                                    showCoverage: false,
+                                    linkedReads: 'normal',
+                                },
+                            }
+                            : undefined,
+                    };
+                },
+                trackIdPrefix: 'ispcr',
+                trackName: `PCR ${fwd.slice(0, 10)}…/${rev.slice(0, 10)}…`,
+                emptyMessage: `No PCR products found in ${db}`,
+                resultNoun: 'product',
+            });
+        }
+    }
+    return (_jsxs(Dialog, { open: true, 
+        // matches BlatDialog: wide enough that the two primers sit side by side on
+        // one row instead of stacking down a narrow column
+        maxWidth: "md", fullWidth: true, title: "In-silico PCR (UCSC)", onClose: () => {
+            handleClose();
+        }, children: [_jsxs(DialogContent, { style: { display: 'flex', flexDirection: 'column', gap: 8 }, children: [_jsx(Typography, { variant: "body2", children: "Primer pairs are queried against the UCSC in-silico PCR server; products are added as a new track." }), _jsxs("div", { style: { display: 'flex', gap: 8 }, children: [_jsx(MonospaceTextField, { label: "Forward primer", value: forwardPrimer, onChange: event => {
+                                    setForwardPrimer(event.target.value);
+                                }, placeholder: "e.g. GTGACGTCGTGACCTAGG", fullWidth: true, error: fwd.length > 0 && fwd.length < MINIMUM_PRIMER_LENGTH }), _jsx(MonospaceTextField, { label: "Reverse primer", value: reversePrimer, onChange: event => {
+                                    setReversePrimer(event.target.value);
+                                }, placeholder: "e.g. CCTAGGTTGACGTCACGA", fullWidth: true, error: rev.length > 0 && rev.length < MINIMUM_PRIMER_LENGTH })] }), _jsx(NumberTextField, { label: "Max product size (bp)", variant: "outlined", size: "small", style: { alignSelf: 'flex-start', width: 200 }, defaultValue: DEFAULT_MAX_PRODUCT_SIZE, min: 1, onValueChange: value => {
+                            setMaxProductSize(value);
+                        }, errorText: "Enter a positive number" }), tooShort && (fwd || rev) ? (_jsx(Typography, { color: "error", variant: "body2", children: `Primers must be at least ${MINIMUM_PRIMER_LENGTH} bp` })) : null, _jsx(UcscQueryFields, { session: session, query: query, urlLabel: "In-silico PCR server URL" }), _jsx(UcscQueryStatus, { query: query })] }), _jsx(UcscQueryActions, { query: query, submitDisabled: tooShort || maxProductSize === undefined || !db, onSubmit: () => void handleSubmit(), onCancel: () => {
+                    handleClose();
+                } })] }));
+});
+export default IsPcrDialog;

package/esm/MonospaceTextField.d.ts

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+import type { TextFieldProps } from '@mui/material';
+export default function MonospaceTextField(props: TextFieldProps): import("react").JSX.Element;

package/esm/MonospaceTextField.js

@@ -0,0 +1,8 @@
+import { jsx as _jsx } from "react/jsx-runtime";
+import { TextField } from '@mui/material';
+// Outlined + monospace: the sequence/primer inputs that are the point of these
+// dialogs, kept visually distinct from the standard-variant UCSC override fields
+// (db/url/apiKey) that most users never touch.
+export default function MonospaceTextField(props) {
+    return (_jsx(TextField, { variant: "outlined", ...props, slotProps: { htmlInput: { style: { fontFamily: 'monospace' } } } }));
+}

package/esm/UcscQueryActions.d.ts

@@ -0,0 +1,8 @@
+import type { UcscQuery } from './useUcscQuery.ts';
+declare const UcscQueryActions: ({ query, submitDisabled, onSubmit, onCancel, }: {
+    query: UcscQuery;
+    submitDisabled: boolean;
+    onSubmit: () => void;
+    onCancel: () => void;
+}) => import("react").JSX.Element;
+export default UcscQueryActions;

package/esm/UcscQueryActions.js

@@ -0,0 +1,19 @@
+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { isElectron } from '@jbrowse/core/util';
+import { Button, DialogActions } from '@mui/material';
+import { observer } from 'mobx-react';
+// The Cancel / Solve CAPTCHA / Submit footer shared by the BLAT and in-silico
+// PCR dialogs. Each dialog supplies its own submit-disabled predicate; the
+// challenge-solve affordance only appears on desktop, where a window can be
+// opened to clear the Cloudflare Turnstile.
+const UcscQueryActions = observer(function UcscQueryActions({ query, submitDisabled, onSubmit, onCancel, }) {
+    const { loading, challenged } = query;
+    return (_jsxs(DialogActions, { children: [_jsx(Button, { variant: "contained", color: "secondary", onClick: () => {
+                    onCancel();
+                }, children: "Cancel" }), challenged && isElectron ? (_jsx(Button, { variant: "outlined", disabled: loading, onClick: () => void query.solveChallenge(() => {
+                    onSubmit();
+                }), children: "Solve CAPTCHA" })) : null, _jsx(Button, { variant: "contained", disabled: loading || submitDisabled, onClick: () => {
+                    onSubmit();
+                }, children: loading ? 'Searching…' : 'Submit' })] }));
+});
+export default UcscQueryActions;

package/esm/UcscQueryFields.d.ts

@@ -0,0 +1,8 @@
+import type { UcscHost } from './ucscShared.ts';
+import type { UcscQuery } from './useUcscQuery.ts';
+declare const UcscQueryFields: ({ session, query, urlLabel, }: {
+    session: UcscHost;
+    query: UcscQuery;
+    urlLabel: string;
+}) => import("react").JSX.Element;
+export default UcscQueryFields;

package/esm/UcscQueryFields.js

@@ -0,0 +1,31 @@
+import { Fragment as _Fragment, jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { useState } from 'react';
+import { AssemblySelector } from '@jbrowse/core/ui';
+import ExpandLessIcon from '@mui/icons-material/ExpandLess';
+import ExpandMoreIcon from '@mui/icons-material/ExpandMore';
+import { Alert, Button, TextField } from '@mui/material';
+import { observer } from 'mobx-react';
+import { looksLikeUcscDb } from './ucscDbMap.js';
+import { ucscDbStamp } from './ucscShared.js';
+// The UCSC connection fields shared by the BLAT and in-silico PCR dialogs. The
+// assembly picker is the only thing most users touch, so it stays visible; the
+// resolved db id, server URL, and apiKey collapse behind a toggle.
+const UcscQueryFields = observer(function UcscQueryFields({ session, query, urlLabel, }) {
+    const { assembly, db, urlBase, apiKey } = query;
+    const [showAdvanced, setShowAdvanced] = useState(false);
+    // the query is only as good as the db behind it, and nothing about a locally
+    // opened genome says UCSC has never heard of it until the request comes back
+    const searchable = !!ucscDbStamp(session, assembly) || looksLikeUcscDb(db);
+    return (_jsxs(_Fragment, { children: [_jsx("div", { style: { alignSelf: 'flex-start', minWidth: 260 }, children: _jsx(AssemblySelector, { session: session, selected: assembly, onChange: arg => {
+                        query.changeAssembly(arg);
+                    }, fullWidth: true }) }), searchable ? null : (_jsx(Alert, { severity: "warning", children: `${assembly} has no UCSC database, so this would search "${db}". A genome opened from your own files is not hosted at UCSC; set the database under advanced settings if one exists.` })), _jsxs(Button, { size: "small", style: { alignSelf: 'flex-start' }, startIcon: showAdvanced ? _jsx(ExpandLessIcon, {}) : _jsx(ExpandMoreIcon, {}), onClick: () => {
+                    setShowAdvanced(!showAdvanced);
+                }, children: [showAdvanced ? 'Hide' : 'Show', " advanced settings"] }), showAdvanced ? (_jsxs(_Fragment, { children: [_jsx(TextField, { label: "UCSC database", value: db, onChange: event => {
+                            query.setDb(event.target.value);
+                        }, helperText: "UCSC db or GenArk accession to query (e.g. hg38 or GCF_000001405.40)" }), _jsx(TextField, { label: urlLabel, value: urlBase, onChange: event => {
+                            query.setUrlBase(event.target.value);
+                        }, helperText: "Point at a mirror or self-hosted proxy if the default is unavailable" }), _jsx(TextField, { label: "UCSC apiKey (optional)", value: apiKey, onChange: event => {
+                            query.changeApiKey(event.target.value);
+                        }, helperText: "Bypasses the UCSC CAPTCHA. Generate one at a UCSC Genome Browser account \u2192 Hub Development \u2192 API key. Not needed when the server URL is a proxy that injects a key." })] })) : null] }));
+});
+export default UcscQueryFields;

package/esm/UcscQueryStatus.d.ts

@@ -0,0 +1,5 @@
+import type { UcscQuery } from './useUcscQuery.ts';
+declare const UcscQueryStatus: ({ query, }: {
+    query: UcscQuery;
+}) => import("react").JSX.Element;
+export default UcscQueryStatus;

package/esm/UcscQueryStatus.js

@@ -0,0 +1,15 @@
+import { Fragment as _Fragment, jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { ErrorMessage } from '@jbrowse/core/ui';
+import { isElectron } from '@jbrowse/core/util';
+import { Typography } from '@mui/material';
+import { observer } from 'mobx-react';
+// Error and CAPTCHA-challenge feedback shared by the BLAT and in-silico PCR
+// dialogs, driven by the shared query state. The solve-in-a-window affordance
+// only exists on desktop, so the browser build points at the apiKey path only.
+const UcscQueryStatus = observer(function UcscQueryStatus({ query, }) {
+    const { error, challenged, notFound } = query;
+    return (_jsxs(_Fragment, { children: [notFound ? (_jsx(Typography, { color: "textSecondary", children: notFound })) : null, error && !challenged ? _jsx(ErrorMessage, { error: error }) : null, challenged ? (_jsx(Typography, { children: isElectron
+                    ? 'The UCSC server requires solving a CAPTCHA. Either paste a UCSC apiKey above to avoid it, or click "Solve CAPTCHA", complete it in the window that opens, and the search will retry automatically.'
+                    : 'The UCSC server requires solving a CAPTCHA. Paste a UCSC apiKey above to avoid it.' })) : null] }));
+});
+export default UcscQueryStatus;

package/esm/UcscResultsWidget/UcscResultsWidget.d.ts

@@ -0,0 +1,5 @@
+import type { UcscResultsWidgetModel } from './stateModel.ts';
+declare const UcscResultsWidget: ({ model, }: {
+    model: UcscResultsWidgetModel;
+}) => import("react").JSX.Element;
+export default UcscResultsWidget;

package/esm/UcscResultsWidget/UcscResultsWidget.js

@@ -0,0 +1,23 @@
+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { getSession } from '@jbrowse/core/util';
+import { Link, List, ListItem, Typography } from '@mui/material';
+import { observer } from 'mobx-react';
+import { featureLocString, navToFeature } from '../ucscShared.js';
+import { hitSummary } from './hitSummary.js';
+// The hit list for a BLAT / in-silico PCR query. The query deliberately does not
+// navigate (see addResultTrack), so this is where the results become reachable:
+// every hit is a link that takes the open view there, best-first, and going to
+// one is a click rather than a re-run. A list rather than a table because the
+// drawer is narrow and a hit's numbers read fine on one line under its
+// coordinates.
+const UcscResultsWidget = observer(function UcscResultsWidget({ model, }) {
+    const { features, assembly, trackName, resultNoun } = model;
+    const session = getSession(model);
+    const count = features.length;
+    const noun = count === 1 ? resultNoun : `${resultNoun}s`;
+    return (_jsxs("div", { style: { margin: 12 }, children: [_jsx(Typography, { children: `${count} ${noun} on ${assembly}, added as the track "${trackName}"` }), resultNoun === 'product' && count > 1 ? (_jsx(Typography, { variant: "body2", color: "warning.main", children: "These primers amplify more than once, so expect a band per product." })) : null, _jsx(List, { dense: true, children: features.map(feature => (_jsxs(ListItem, { disableGutters: true, style: { display: 'block' }, children: [_jsxs(Link, { href: "#", onClick: event => {
+                                event.preventDefault();
+                                void navToFeature(session, assembly, feature);
+                            }, children: [featureLocString(feature), feature.strand === -1 ? ' (-)' : ' (+)'] }), _jsx(Typography, { variant: "body2", color: "textSecondary", children: hitSummary(feature) })] }, feature.uniqueId))) })] }));
+});
+export default UcscResultsWidget;

package/esm/UcscResultsWidget/configSchema.d.ts

@@ -0,0 +1 @@
+export declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;

package/esm/UcscResultsWidget/configSchema.js

@@ -0,0 +1,2 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
+export const configSchema = ConfigurationSchema('UcscResultsWidget', {});

package/esm/UcscResultsWidget/hitSummary.d.ts

@@ -0,0 +1,9 @@
+import type { SimpleFeatureSerialized } from '@jbrowse/core/util';
+/**
+ * The one line under a hit's location. A BLAT hit is judged on identity and on
+ * how much of the query it accounts for (a 99% hit over a tenth of the query is
+ * not the locus you searched for), an hgPcr product on its size and the primer
+ * pair that made it. Built from the fields the feature actually carries, so it
+ * can't claim a number the hit doesn't have.
+ */
+export declare function hitSummary(feature: SimpleFeatureSerialized): string;

package/esm/UcscResultsWidget/hitSummary.js

@@ -0,0 +1,31 @@
+// feature fields are `unknown` off the serialized feature's index signature
+function num(value) {
+    return typeof value === 'number' ? value : undefined;
+}
+function text(value) {
+    return typeof value === 'string' ? value : '';
+}
+/**
+ * The one line under a hit's location. A BLAT hit is judged on identity and on
+ * how much of the query it accounts for (a 99% hit over a tenth of the query is
+ * not the locus you searched for), an hgPcr product on its size and the primer
+ * pair that made it. Built from the fields the feature actually carries, so it
+ * can't claim a number the hit doesn't have.
+ */
+export function hitSummary(feature) {
+    const identity = num(feature.identity);
+    const coverage = num(feature.coverage);
+    const forward = text(feature.forwardPrimer);
+    const reverse = text(feature.reversePrimer);
+    return identity === undefined
+        ? [text(feature.name), forward && reverse ? `${forward} / ${reverse}` : '']
+            .filter(Boolean)
+            .join(', ')
+        : [
+            text(feature.queryName),
+            `${identity}% identity`,
+            coverage === undefined ? '' : `${coverage}% of query`,
+        ]
+            .filter(Boolean)
+            .join(', ');
+}

package/esm/UcscResultsWidget/index.d.ts

@@ -0,0 +1,2 @@
+import type PluginManager from '@jbrowse/core/PluginManager';
+export default function UcscResultsWidgetF(pluginManager: PluginManager): void;

package/esm/UcscResultsWidget/index.js

@@ -0,0 +1,13 @@
+import { lazy } from 'react';
+import WidgetType from '@jbrowse/core/pluggableElementTypes/WidgetType';
+import { configSchema } from './configSchema.js';
+import { stateModelFactory } from './stateModel.js';
+export default function UcscResultsWidgetF(pluginManager) {
+    pluginManager.addWidgetType(() => new WidgetType({
+        name: 'UcscResultsWidget',
+        heading: 'Search results',
+        configSchema,
+        stateModel: stateModelFactory(),
+        ReactComponent: lazy(() => import('./UcscResultsWidget.js')),
+    }));
+}