@jbrowse/plugin-bed 4.1.14 → 4.1.15
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -8,7 +8,7 @@ declare const BedGraphTabixAdapter: import("@jbrowse/core/configuration/configur
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};
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index: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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indexType: {
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-
model: import("@jbrowse/mobx-state-tree").ISimpleType<
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model: import("@jbrowse/mobx-state-tree").ISimpleType<"TBI" | "CSI">;
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type: string;
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defaultValue: string;
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};
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@@ -22,7 +22,6 @@ export default class BedTabixAdapter extends BaseFeatureDataAdapter {
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}>;
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getMetadataPre(): Promise<{
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meta: {
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[key: string]: any;
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refNameToId: Record<string, number>;
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refIdToName: string[];
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metaChar: string | undefined;
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@@ -33,6 +32,15 @@ export default class BedTabixAdapter extends BaseFeatureDataAdapter {
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};
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coordinateType: string;
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format: string;
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maxRefLength: number;
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skipLines?: number;
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maxBinNumber?: number;
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maxBlockSize: number;
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firstDataLine?: import("@gmod/tabix").default;
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refCount?: number;
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csi?: boolean;
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csiVersion?: number;
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depth?: number;
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};
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}>;
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getMetadata(opts?: BaseOptions): Promise<{
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@@ -8,7 +8,7 @@ declare const BedTabixAdapter: import("@jbrowse/core/configuration/configuration
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};
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index: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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indexType: {
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-
model: import("@jbrowse/mobx-state-tree").ISimpleType<
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model: import("@jbrowse/mobx-state-tree").ISimpleType<"TBI" | "CSI">;
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type: string;
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defaultValue: string;
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};
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@jbrowse/plugin-bed",
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"version": "4.1.
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"version": "4.1.15",
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"type": "module",
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"description": "JBrowse 2 bed adapters, tracks, etc.",
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"keywords": [
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@@ -22,13 +22,13 @@
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],
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"dependencies": {
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"@flatten-js/interval-tree": "^2.0.3",
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"@gmod/bbi": "^
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"@gmod/bbi": "^9.0.7",
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"@gmod/bed": "^2.1.10",
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"@gmod/tabix": "^3.
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"@jbrowse/mobx-state-tree": "^5.
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"@gmod/tabix": "^3.3.1",
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"@jbrowse/mobx-state-tree": "^5.6.0",
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"mobx": "^6.15.0",
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"rxjs": "^7.8.2",
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"@jbrowse/core": "^4.1.
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"@jbrowse/core": "^4.1.15"
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},
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"publishConfig": {
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"access": "public"
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