@jbrowse/plugin-bed 4.0.3 → 4.1.0

package/esm/BedAdapter/BedAdapter.d.ts

@@ -1,6 +1,6 @@
-import { IntervalTree } from '@flatten-js/interval-tree';
 import BED from '@gmod/bed';
 import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { IntervalTree } from '@jbrowse/core/util';
 import type { BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
 import type { Feature, Region } from '@jbrowse/core/util';
 export default class BedAdapter extends BaseFeatureDataAdapter {

package/esm/BedAdapter/BedAdapter.js

@@ -1,7 +1,6 @@
-import { IntervalTree } from '@flatten-js/interval-tree';
 import BED from '@gmod/bed';
 import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { SimpleFeature, fetchAndMaybeUnzip } from '@jbrowse/core/util';
+import { IntervalTree, SimpleFeature, fetchAndMaybeUnzip, } from '@jbrowse/core/util';
 import { openLocation } from '@jbrowse/core/util/io';
 import { parseLineByLine } from '@jbrowse/core/util/parseLineByLine';
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';

package/esm/BedGraphAdapter/BedGraphAdapter.d.ts

@@ -1,5 +1,5 @@
-import { IntervalTree } from '@flatten-js/interval-tree';
 import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { IntervalTree } from '@jbrowse/core/util';
 import type { BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
 import type { Feature, Region } from '@jbrowse/core/util';
 export default class BedGraphAdapter extends BaseFeatureDataAdapter {

package/esm/BedGraphAdapter/BedGraphAdapter.js

@@ -1,6 +1,5 @@
-import { IntervalTree } from '@flatten-js/interval-tree';
 import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { SimpleFeature, fetchAndMaybeUnzip } from '@jbrowse/core/util';
+import { IntervalTree, SimpleFeature, fetchAndMaybeUnzip, } from '@jbrowse/core/util';
 import { openLocation } from '@jbrowse/core/util/io';
 import { parseLineByLine } from '@jbrowse/core/util/parseLineByLine';
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';

package/esm/BedpeAdapter/BedpeAdapter.d.ts

@@ -1,5 +1,5 @@
-import { IntervalTree } from '@flatten-js/interval-tree';
 import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { IntervalTree } from '@jbrowse/core/util';
 import type { BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
 import type { Feature, Region } from '@jbrowse/core/util';
 export default class BedpeAdapter extends BaseFeatureDataAdapter {

package/esm/BedpeAdapter/BedpeAdapter.js

@@ -1,6 +1,5 @@
-import { IntervalTree } from '@flatten-js/interval-tree';
 import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { fetchAndMaybeUnzipText } from '@jbrowse/core/util';
+import { IntervalTree, fetchAndMaybeUnzipText } from '@jbrowse/core/util';
 import { openLocation } from '@jbrowse/core/util/io';
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';
 import { featureData } from "./util.js";

package/esm/util.d.ts

@@ -1,4 +1,4 @@
-import type { MinimalFeature } from './types';
+import type { MinimalFeature } from './types.ts';
 import type BED from '@gmod/bed';
 export declare function makeBlocks({ start, uniqueId, refName, chromStarts, blockCount, blockSizes, blockStarts, }: {
     blockCount: number;

package/package.json

@@ -1,6 +1,7 @@
 {
   "name": "@jbrowse/plugin-bed",
-  "version": "4.0.3",
+  "version": "4.1.0",
+  "type": "module",
   "description": "JBrowse 2 bed adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -22,12 +23,12 @@
   "dependencies": {
     "@flatten-js/interval-tree": "^2.0.3",
     "@gmod/bbi": "^8.1.1",
-    "@gmod/bed": "^2.1.7",
+    "@gmod/bed": "^2.1.10",
     "@gmod/tabix": "^3.2.2",
     "@jbrowse/mobx-state-tree": "^5.5.0",
     "mobx": "^6.15.0",
     "rxjs": "^7.8.2",
-    "@jbrowse/core": "^4.0.3"
+    "@jbrowse/core": "^4.1.0"
   },
   "publishConfig": {
     "access": "public"