@jbrowse/plugin-bed 2.8.0 → 2.10.0

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Files changed (5) hide show
  1. package/dist/BedTabixAdapter/BedTabixAdapter.js +1 -0
  2. package/dist/BedpeAdapter/BedpeAdapter.js +1 -1
  3. package/esm/BedTabixAdapter/BedTabixAdapter.js +1 -0
  4. package/esm/BedpeAdapter/BedpeAdapter.js +1 -1
  5. package/package.json +2 -2
package/dist/BedTabixAdapter/BedTabixAdapter.js CHANGED
@@ -8,6 +8,7 @@ const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
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  const io_1 = require("@jbrowse/core/util/io");
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  const rxjs_1 = require("@jbrowse/core/util/rxjs");
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  const tabix_1 = require("@gmod/tabix");
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+ // locals
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  const util_1 = require("../util");
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  class BedTabixAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
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  constructor(config, getSubAdapter, pluginManager) {
package/dist/BedpeAdapter/BedpeAdapter.js CHANGED
@@ -37,7 +37,7 @@ function featureData(line, uniqueId, flip, names) {
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  start: start1,
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  end: end1,
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  refName: ref1,
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- ...(ALT ? { ALT: [ALT] } : {}),
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+ ...(ALT ? { ALT: [ALT] } : {}), // it's an array in VCF
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  strand: strand1,
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  name,
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  ...rest,
package/esm/BedTabixAdapter/BedTabixAdapter.js CHANGED
@@ -3,6 +3,7 @@ import { BaseFeatureDataAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter
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  import { openLocation } from '@jbrowse/core/util/io';
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  import { ObservableCreate } from '@jbrowse/core/util/rxjs';
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  import { TabixIndexedFile } from '@gmod/tabix';
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+ // locals
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  import { featureData } from '../util';
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  class BedTabixAdapter extends BaseFeatureDataAdapter {
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  constructor(config, getSubAdapter, pluginManager) {
package/esm/BedpeAdapter/BedpeAdapter.js CHANGED
@@ -31,7 +31,7 @@ export function featureData(line, uniqueId, flip, names) {
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  start: start1,
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  end: end1,
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  refName: ref1,
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- ...(ALT ? { ALT: [ALT] } : {}),
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+ ...(ALT ? { ALT: [ALT] } : {}), // it's an array in VCF
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  strand: strand1,
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  name,
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  ...rest,
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-bed",
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- "version": "2.8.0",
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+ "version": "2.10.0",
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  "description": "JBrowse 2 bed adapters, tracks, etc.",
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  "keywords": [
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  "jbrowse",
@@ -55,5 +55,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "ee8c2bdc8bd4f1a70b1eefda984f04a2830d9ca0"
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+ "gitHead": "223d8bfb68fd1bacaf22852639ad5920f1b7f43b"
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  }