@jbrowse/plugin-bed 2.12.0 → 2.12.2

package/dist/BedAdapter/index.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = BedAdapterF;
 const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
 const configSchema_1 = __importDefault(require("./configSchema"));
 function BedAdapterF(pluginManager) {
@@ -36,4 +37,3 @@ function BedAdapterF(pluginManager) {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./BedAdapter'))).then(r => r.default),
     }));
 }
-exports.default = BedAdapterF;

package/dist/BedTabixAdapter/index.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = BedTabixAdapterF;
 const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
 const configSchema_1 = __importDefault(require("./configSchema"));
 function BedTabixAdapterF(pluginManager) {
@@ -36,4 +37,3 @@ function BedTabixAdapterF(pluginManager) {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./BedTabixAdapter'))).then(r => r.default),
     }));
 }
-exports.default = BedTabixAdapterF;

package/dist/BedpeAdapter/BedpeAdapter.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.featureData = void 0;
+exports.featureData = featureData;
 const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
 const io_1 = require("@jbrowse/core/util/io");
 const rxjs_1 = require("@jbrowse/core/util/rxjs");
@@ -46,7 +46,6 @@ function featureData(line, uniqueId, flip, names) {
         mate: { refName: ref2, start: start2, end: end2, strand: strand2 },
     });
 }
-exports.featureData = featureData;
 function parseStrand(strand) {
     if (strand === '+') {
         return 1;

package/dist/BedpeAdapter/index.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = BedpeAdapterF;
 const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
 const configSchema_1 = __importDefault(require("./configSchema"));
 function BedpeAdapterF(pluginManager) {
@@ -36,4 +37,3 @@ function BedpeAdapterF(pluginManager) {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./BedpeAdapter'))).then(r => r.default),
     }));
 }
-exports.default = BedpeAdapterF;

package/dist/BigBedAdapter/BigBedAdapter.d.ts

@@ -13,7 +13,7 @@ export default class BigBedAdapter extends BaseFeatureDataAdapter {
     }>;
     configure(opts?: BaseOptions): Promise<{
         bigbed: BigBed;
-        header: import("@gmod/bbi").Header;
+        header: Awaited<ReturnType<BigBed["getHeader"]>>;
         parser: BED;
     }>;
     getRefNames(opts?: BaseOptions): Promise<string[]>;

package/dist/BigBedAdapter/index.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = BigBedAdapterF;
 const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
 const configSchema_1 = __importDefault(require("./configSchema"));
 function BigBedAdapterF(pluginManager) {
@@ -36,4 +37,3 @@ function BigBedAdapterF(pluginManager) {
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./BigBedAdapter'))).then(r => r.default),
     }));
 }
-exports.default = BigBedAdapterF;

package/dist/util.js

@@ -1,6 +1,9 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isUcscProcessedTranscript = exports.featureData = exports.makeBlocks = exports.ucscProcessedTranscript = void 0;
+exports.ucscProcessedTranscript = ucscProcessedTranscript;
+exports.makeBlocks = makeBlocks;
+exports.featureData = featureData;
+exports.isUcscProcessedTranscript = isUcscProcessedTranscript;
 const util_1 = require("@jbrowse/core/util");
 function ucscProcessedTranscript(feature) {
     var _a;
@@ -97,7 +100,6 @@ function ucscProcessedTranscript(feature) {
     });
     return { ...rest, strand, type: 'mRNA', refName, subfeatures };
 }
-exports.ucscProcessedTranscript = ucscProcessedTranscript;
 function defaultParser(fields, line) {
     const { blockStarts, blockCount, chromStarts, thickEnd, thickStart, blockSizes, ...rest } = Object.fromEntries(line.split('\t').map((f, i) => [fields[i], f]));
     return {
@@ -126,7 +128,6 @@ function makeBlocks({ start, uniqueId, refName, chromStarts, blockCount, blockSi
     }
     return subfeatures;
 }
-exports.makeBlocks = makeBlocks;
 function featureData(line, colRef, colStart, colEnd, scoreColumn, parser, uniqueId, names) {
     const l = line.split('\t');
     const refName = l[colRef];
@@ -172,8 +173,6 @@ function featureData(line, colRef, colStart, colEnd, scoreColumn, parser, unique
             : f,
     });
 }
-exports.featureData = featureData;
 function isUcscProcessedTranscript(f) {
     return f.thickStart && f.blockCount && f.strand !== 0;
 }
-exports.isUcscProcessedTranscript = isUcscProcessedTranscript;

package/esm/BigBedAdapter/BigBedAdapter.d.ts

@@ -13,7 +13,7 @@ export default class BigBedAdapter extends BaseFeatureDataAdapter {
     }>;
     configure(opts?: BaseOptions): Promise<{
         bigbed: BigBed;
-        header: import("@gmod/bbi").Header;
+        header: Awaited<ReturnType<BigBed["getHeader"]>>;
         parser: BED;
     }>;
     getRefNames(opts?: BaseOptions): Promise<string[]>;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-bed",
-  "version": "2.12.0",
+  "version": "2.12.2",
   "description": "JBrowse 2 bed adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -55,5 +55,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "935f2602d29abc737bb1f493a922b6218d023ae2"
+  "gitHead": "1ec66736ce048a1637f52b7a7ef2eb02d956b771"
 }