@jbrowse/plugin-bed 2.1.7 → 2.2.1

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Files changed (26) hide show
  1. package/dist/BedAdapter/configSchema.d.ts +2 -2
  2. package/dist/BedAdapter/configSchema.js +27 -1
  3. package/dist/BedAdapter/configSchema.js.map +1 -1
  4. package/dist/BedTabixAdapter/configSchema.d.ts +2 -2
  5. package/dist/BedTabixAdapter/configSchema.js +24 -1
  6. package/dist/BedTabixAdapter/configSchema.js.map +1 -1
  7. package/dist/BigBedAdapter/configSchema.d.ts +2 -2
  8. package/dist/BigBedAdapter/configSchema.js +9 -1
  9. package/dist/BigBedAdapter/configSchema.js.map +1 -1
  10. package/esm/BedAdapter/configSchema.d.ts +2 -2
  11. package/esm/BedAdapter/configSchema.js +27 -1
  12. package/esm/BedAdapter/configSchema.js.map +1 -1
  13. package/esm/BedTabixAdapter/configSchema.d.ts +2 -2
  14. package/esm/BedTabixAdapter/configSchema.js +24 -1
  15. package/esm/BedTabixAdapter/configSchema.js.map +1 -1
  16. package/esm/BigBedAdapter/configSchema.d.ts +2 -2
  17. package/esm/BigBedAdapter/configSchema.js +9 -1
  18. package/esm/BigBedAdapter/configSchema.js.map +1 -1
  19. package/package.json +2 -2
  20. package/src/BedAdapter/__snapshots__/BedAdapter.test.ts.snap +58 -58
  21. package/src/BedAdapter/configSchema.ts +28 -4
  22. package/src/BedTabixAdapter/__snapshots__/BedTabixAdapter.test.ts.snap +58 -58
  23. package/src/BedTabixAdapter/configSchema.ts +26 -1
  24. package/src/BigBedAdapter/__snapshots__/BigBedAdapter.test.ts.snap +31 -31
  25. package/src/BigBedAdapter/configSchema.ts +11 -1
  26. package/src/__snapshots__/index.test.js.snap +1 -1
package/src/BigBedAdapter/__snapshots__/BigBedAdapter.test.ts.snap CHANGED
@@ -1,8 +1,8 @@
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  // Jest Snapshot v1, https://goo.gl/fbAQLP
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  exports[`adapter can fetch features from volvox.bb 1`] = `
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- Array [
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- Object {
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+ [
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+ {
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  "end": 9000,
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  "geneBioType": "-",
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  "geneId": "EDEN",
@@ -14,8 +14,8 @@ Array [
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  "score": 1000,
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  "start": 1049,
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  "strand": 1,
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- "subfeatures": Array [
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- Object {
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+ "subfeatures": [
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+ {
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  "end": 1200,
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  "parentId": "test-bb-358912",
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  "start": 1049,
@@ -23,7 +23,7 @@ Array [
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  "type": "five_prime_UTR",
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  "uniqueId": "test-bb-358912-0",
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  },
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- Object {
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+ {
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  "end": 1500,
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  "parentId": "test-bb-358912",
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  "start": 1200,
@@ -31,7 +31,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-358912-1",
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  },
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- Object {
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+ {
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  "end": 3902,
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  "parentId": "test-bb-358912",
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  "start": 2999,
@@ -39,7 +39,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-358912-2",
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  },
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- Object {
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+ {
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  "end": 5500,
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  "parentId": "test-bb-358912",
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  "start": 4999,
@@ -47,7 +47,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-358912-3",
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  },
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- Object {
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+ {
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  "end": 7608,
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  "parentId": "test-bb-358912",
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  "start": 6999,
@@ -55,7 +55,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-358912-4",
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  },
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- Object {
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+ {
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  "end": 9000,
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  "parentId": "test-bb-358912",
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  "start": 7608,
@@ -68,7 +68,7 @@ Array [
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  "type": "mRNA",
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  "uniqueId": "test-bb-358912",
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  },
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- Object {
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+ {
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  "end": 9000,
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  "geneBioType": "-",
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  "geneId": "EDEN",
@@ -80,8 +80,8 @@ Array [
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  "score": 1000,
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  "start": 1049,
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  "strand": 1,
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- "subfeatures": Array [
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- Object {
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+ "subfeatures": [
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+ {
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  "end": 1200,
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  "parentId": "test-bb-359006",
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  "start": 1049,
@@ -89,7 +89,7 @@ Array [
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  "type": "five_prime_UTR",
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  "uniqueId": "test-bb-359006-0",
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  },
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- Object {
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+ {
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  "end": 1500,
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  "parentId": "test-bb-359006",
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  "start": 1200,
@@ -97,7 +97,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-359006-1",
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  },
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- Object {
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+ {
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  "end": 5500,
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  "parentId": "test-bb-359006",
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  "start": 4999,
@@ -105,7 +105,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-359006-2",
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  },
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- Object {
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+ {
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  "end": 7608,
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  "parentId": "test-bb-359006",
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  "start": 6999,
@@ -113,7 +113,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-359006-3",
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  },
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- Object {
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+ {
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  "end": 9000,
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  "parentId": "test-bb-359006",
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  "start": 7608,
@@ -126,7 +126,7 @@ Array [
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  "type": "mRNA",
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  "uniqueId": "test-bb-359006",
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  },
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- Object {
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+ {
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  "end": 9000,
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  "geneBioType": "-",
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  "geneId": "EDEN",
@@ -138,8 +138,8 @@ Array [
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  "score": 1000,
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  "start": 1299,
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  "strand": 1,
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- "subfeatures": Array [
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- Object {
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+ "subfeatures": [
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+ {
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  "end": 1500,
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  "parentId": "test-bb-359091",
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  "start": 1299,
@@ -147,7 +147,7 @@ Array [
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  "type": "five_prime_UTR",
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  "uniqueId": "test-bb-359091-0",
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  },
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- Object {
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+ {
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  "end": 3300,
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  "parentId": "test-bb-359091",
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  "start": 2999,
@@ -155,7 +155,7 @@ Array [
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  "type": "five_prime_UTR",
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  "uniqueId": "test-bb-359091-1",
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  },
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- Object {
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+ {
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  "end": 3902,
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  "parentId": "test-bb-359091",
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  "start": 3300,
@@ -163,7 +163,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-359091-2",
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  },
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- Object {
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+ {
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  "end": 5500,
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  "parentId": "test-bb-359091",
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  "start": 4999,
@@ -171,7 +171,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-359091-3",
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  },
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- Object {
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+ {
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  "end": 7600,
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  "parentId": "test-bb-359091",
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  "start": 6999,
@@ -179,7 +179,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-359091-4",
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  },
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- Object {
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+ {
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  "end": 9000,
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  "parentId": "test-bb-359091",
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  "start": 7600,
@@ -192,7 +192,7 @@ Array [
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  "type": "mRNA",
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  "uniqueId": "test-bb-359091",
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  },
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- Object {
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+ {
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  "end": 23000,
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  "geneBioType": "-",
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  "geneId": "rna-Apple3",
@@ -204,8 +204,8 @@ Array [
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  "score": 1000,
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  "start": 17399,
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  "strand": 1,
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- "subfeatures": Array [
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- Object {
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+ "subfeatures": [
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+ {
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  "end": 17999,
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  "parentId": "test-bb-359185",
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  "start": 17399,
@@ -213,7 +213,7 @@ Array [
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  "type": "five_prime_UTR",
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  "uniqueId": "test-bb-359185-0",
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  },
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- Object {
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+ {
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  "end": 18800,
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  "parentId": "test-bb-359185",
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  "start": 17999,
@@ -221,7 +221,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-359185-1",
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  },
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- Object {
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+ {
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  "end": 19500,
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  "parentId": "test-bb-359185",
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  "start": 18999,
@@ -229,7 +229,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-359185-2",
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  },
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- Object {
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+ {
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  "end": 21200,
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  "parentId": "test-bb-359185",
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  "start": 20999,
@@ -237,7 +237,7 @@ Array [
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  "type": "CDS",
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  "uniqueId": "test-bb-359185-3",
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  },
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- Object {
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+ {
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  "end": 23000,
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  "parentId": "test-bb-359185",
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  "start": 21200,
package/src/BigBedAdapter/configSchema.ts CHANGED
@@ -1,8 +1,16 @@
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  import { ConfigurationSchema } from '@jbrowse/core/configuration'
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- export default ConfigurationSchema(
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+ /**
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+ * #config BigBedAdapter
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+ */
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+ function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
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+
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+ const BigBedAdapter = ConfigurationSchema(
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  'BigBedAdapter',
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  {
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+ /**
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+ * #slot
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+ */
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  bigBedLocation: {
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  type: 'fileLocation',
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  defaultValue: { uri: '/path/to/my.bb', locationType: 'UriLocation' },
@@ -10,3 +18,5 @@ export default ConfigurationSchema(
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  },
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  { explicitlyTyped: true },
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  )
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+
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+ export default BigBedAdapter
package/src/__snapshots__/index.test.js.snap CHANGED
@@ -1,3 +1,3 @@
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  // Jest Snapshot v1, https://goo.gl/fbAQLP
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- exports[`plugin in a stock JBrowse 1`] = `Object {}`;
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+ exports[`plugin in a stock JBrowse 1`] = `{}`;