@jbrowse/plugin-bed 1.7.0 → 1.7.3

package/dist/BedTabixAdapter/BedTabixAdapter.d.ts

@@ -1,23 +1,23 @@
-import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { Region } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-import { TabixIndexedFile } from '@gmod/tabix';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-export default class BedTabixAdapter extends BaseFeatureDataAdapter {
-    private parser;
-    protected bed: TabixIndexedFile;
-    protected columnNames: string[];
-    protected scoreColumn: string;
-    static capabilities: string[];
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    getRefNames(opts?: BaseOptions): Promise<any>;
-    getHeader(): Promise<string>;
-    defaultParser(fields: string[], line: string): {
-        [k: string]: string;
-    };
-    getNames(): Promise<string[] | null>;
-    getFeatures(query: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
-    freeResources(): void;
-}
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { Region } from '@jbrowse/core/util/types';
+import { Feature } from '@jbrowse/core/util/simpleFeature';
+import { TabixIndexedFile } from '@gmod/tabix';
+import PluginManager from '@jbrowse/core/PluginManager';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
+import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+export default class BedTabixAdapter extends BaseFeatureDataAdapter {
+    private parser;
+    protected bed: TabixIndexedFile;
+    protected columnNames: string[];
+    protected scoreColumn: string;
+    static capabilities: string[];
+    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
+    getRefNames(opts?: BaseOptions): Promise<any>;
+    getHeader(): Promise<string>;
+    defaultParser(fields: string[], line: string): {
+        [k: string]: string;
+    };
+    getNames(): Promise<string[] | null>;
+    getFeatures(query: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
+    freeResources(): void;
+}

package/dist/BedTabixAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/BedTabixAdapter/index.d.ts

@@ -1 +1 @@
-export { default as configSchema } from './configSchema';
+export { default as configSchema } from './configSchema';

package/dist/BigBedAdapter/BigBedAdapter.d.ts

@@ -1,46 +1,46 @@
-import { BigBed } from '@gmod/bbi';
-import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { Region } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-interface BEDFeature {
-    chrom: string;
-    chromStart: number;
-    chromEnd: number;
-    [key: string]: any;
-}
-interface Parser {
-    parseLine: (line: string, opts: {
-        uniqueId: string | number;
-    }) => BEDFeature;
-    autoSql: {
-        fields: {
-            name: string;
-            comment: string;
-        }[];
-    };
-}
-export default class BigBedAdapter extends BaseFeatureDataAdapter {
-    private cached?;
-    configurePre(opts?: BaseOptions): Promise<{
-        bigbed: BigBed;
-        header: any;
-        parser: Parser;
-    }>;
-    configure(opts?: BaseOptions): Promise<{
-        bigbed: BigBed;
-        header: any;
-        parser: Parser;
-    }>;
-    getRefNames(opts?: BaseOptions): Promise<string[]>;
-    getHeader(opts?: BaseOptions): Promise<{
-        version: any;
-        fileType: any;
-        autoSql: {};
-        fields: {
-            [k: string]: string;
-        };
-    }>;
-    getFeatures(region: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
-    freeResources(): void;
-}
-export {};
+import { BigBed } from '@gmod/bbi';
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { Region } from '@jbrowse/core/util/types';
+import { Feature } from '@jbrowse/core/util/simpleFeature';
+interface BEDFeature {
+    chrom: string;
+    chromStart: number;
+    chromEnd: number;
+    [key: string]: any;
+}
+interface Parser {
+    parseLine: (line: string, opts: {
+        uniqueId: string | number;
+    }) => BEDFeature;
+    autoSql: {
+        fields: {
+            name: string;
+            comment: string;
+        }[];
+    };
+}
+export default class BigBedAdapter extends BaseFeatureDataAdapter {
+    private cached?;
+    configurePre(opts?: BaseOptions): Promise<{
+        bigbed: BigBed;
+        header: any;
+        parser: Parser;
+    }>;
+    configure(opts?: BaseOptions): Promise<{
+        bigbed: BigBed;
+        header: any;
+        parser: Parser;
+    }>;
+    getRefNames(opts?: BaseOptions): Promise<string[]>;
+    getHeader(opts?: BaseOptions): Promise<{
+        version: any;
+        fileType: any;
+        autoSql: {};
+        fields: {
+            [k: string]: string;
+        };
+    }>;
+    getFeatures(region: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
+    freeResources(): void;
+}
+export {};

package/dist/BigBedAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/BigBedAdapter/index.d.ts

@@ -1 +1 @@
-export { default as configSchema } from './configSchema';
+export { default as configSchema } from './configSchema';

package/dist/index.d.ts

@@ -1,6 +1,6 @@
-import Plugin from '@jbrowse/core/Plugin';
-import PluginManager from '@jbrowse/core/PluginManager';
-export default class BedPlugin extends Plugin {
-    name: string;
-    install(pluginManager: PluginManager): void;
-}
+import Plugin from '@jbrowse/core/Plugin';
+import PluginManager from '@jbrowse/core/PluginManager';
+export default class BedPlugin extends Plugin {
+    name: string;
+    install(pluginManager: PluginManager): void;
+}

package/dist/util.d.ts

@@ -1,2 +1,2 @@
-import SimpleFeature, { Feature } from '@jbrowse/core/util/simpleFeature';
-export declare function ucscProcessedTranscript(feature: Feature): Feature | SimpleFeature;
+import SimpleFeature, { Feature } from '@jbrowse/core/util/simpleFeature';
+export declare function ucscProcessedTranscript(feature: Feature): Feature | SimpleFeature;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-bed",
-  "version": "1.7.0",
+  "version": "1.7.3",
   "description": "JBrowse 2 bed adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -29,7 +29,8 @@
     "prepack": "yarn build; yarn useDist",
     "postpack": "yarn useSrc",
     "useDist": "node ../../scripts/useDist.js",
-    "useSrc": "node ../../scripts/useSrc.js"
+    "useSrc": "node ../../scripts/useSrc.js",
+    "postbuild": "tsc --build tsconfig.build.json"
   },
   "dependencies": {
     "@gmod/bbi": "^1.0.32",
@@ -44,5 +45,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "cc13844074d11881d211342a6a7eea113561b70b"
+  "gitHead": "09b13c85acf4ac68dd71ab23af87656c7552fdaf"
 }

package/dist/index.test.d.ts

@@ -1 +0,0 @@
-export {};