@jbrowse/plugin-authentication 2.6.1 → 2.6.3

package/esm/OAuthModel/model.js.map

@@ -1 +0,0 @@
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package/esm/OAuthModel/util.js.map

@@ -1 +0,0 @@
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package/esm/index.js.map

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package/src/DropboxOAuthModel/configSchema.ts

@@ -1,69 +0,0 @@
-import { ConfigurationSchema } from '@jbrowse/core/configuration'
-import { Instance } from 'mobx-state-tree'
-import OAuthConfigSchema from '../OAuthModel/configSchema'
-
-/**
- * #config DropboxOAuthInternetAccount
- */
-function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
-
-const DropboxOAuthConfigSchema = ConfigurationSchema(
-  'DropboxOAuthInternetAccount',
-  {
-    /**
-     * #slot
-     */
-    authEndpoint: {
-      description: 'the authorization code endpoint of the internet account',
-      type: 'string',
-      defaultValue: 'https://www.dropbox.com/oauth2/authorize',
-    },
-    /**
-     * #slot
-     */
-    tokenEndpoint: {
-      description: 'the token endpoint of the internet account',
-      type: 'string',
-      defaultValue: 'https://api.dropbox.com/oauth2/token',
-    },
-    /**
-     * #slot
-     */
-    needsPKCE: {
-      description: 'boolean to indicate if the endpoint needs a PKCE code',
-      type: 'boolean',
-      defaultValue: true,
-    },
-    /**
-     * #slot
-     */
-    domains: {
-      description:
-        'array of valid domains the url can contain to use this account',
-      type: 'stringArray',
-      defaultValue: [
-        'addtodropbox.com',
-        'db.tt',
-        'dropbox.com',
-        'dropboxapi.com',
-        'dropboxbusiness.com',
-        'dropbox.tech',
-        'getdropbox.com',
-      ],
-    },
-  },
-  {
-    /**
-     * #baseConfiguration
-     */
-    baseConfiguration: OAuthConfigSchema,
-    explicitlyTyped: true,
-  },
-)
-
-export type DropboxOAuthInternetAccountConfigModel =
-  typeof DropboxOAuthConfigSchema
-
-export type DropboxOAuthInternetAccountConfig =
-  Instance<DropboxOAuthInternetAccountConfigModel>
-export default DropboxOAuthConfigSchema

package/src/DropboxOAuthModel/index.ts

@@ -1,2 +0,0 @@
-export { default as configSchema } from './configSchema'
-export { default as modelFactory } from './model'

package/src/DropboxOAuthModel/model.tsx

@@ -1,122 +0,0 @@
-import React from 'react'
-import { ConfigurationReference } from '@jbrowse/core/configuration'
-import { UriLocation } from '@jbrowse/core/util/types'
-import { SvgIconProps, SvgIcon } from '@mui/material'
-import { Instance, types } from 'mobx-state-tree'
-
-// locals
-import { DropboxOAuthInternetAccountConfigModel } from './configSchema'
-import baseModel from '../OAuthModel/model'
-import { configSchema as OAuthConfigSchema } from '../OAuthModel'
-import { getDescriptiveErrorMessage } from './util'
-
-export function DropboxIcon(props: SvgIconProps) {
-  return (
-    <SvgIcon {...props}>
-      <path d="M3 6.2L8 9.39L13 6.2L8 3L3 6.2M13 6.2L18 9.39L23 6.2L18 3L13 6.2M3 12.55L8 15.74L13 12.55L8 9.35L3 12.55M18 9.35L13 12.55L18 15.74L23 12.55L18 9.35M8.03 16.8L13.04 20L18.04 16.8L13.04 13.61L8.03 16.8Z" />
-    </SvgIcon>
-  )
-}
-
-/**
- * #stateModel DropboxOAuthInternetAccount
- */
-const stateModelFactory = (
-  configSchema: DropboxOAuthInternetAccountConfigModel,
-) => {
-  return baseModel(OAuthConfigSchema)
-    .named('DropboxOAuthInternetAccount')
-    .props({
-      /**
-       * #property
-       */
-      type: types.literal('DropboxOAuthInternetAccount'),
-      /**
-       * #property
-       */
-      configuration: ConfigurationReference(configSchema),
-    })
-    .views(() => ({
-      /**
-       * #getter
-       * The FileSelector icon for Dropbox
-       */
-      get toggleContents() {
-        return <DropboxIcon />
-      },
-      /**
-       * #getter
-       */
-      get selectorLabel() {
-        return 'Enter Dropbox share link'
-      },
-    }))
-    .actions(self => ({
-      /**
-       * #method
-       */
-      getFetcher(location?: UriLocation) {
-        return async (input: RequestInfo, init?: RequestInit) => {
-          const authToken = await self.getToken(location)
-          const newInit = self.addAuthHeaderToInit(
-            { ...init, method: 'POST' },
-            authToken,
-          )
-          newInit.headers.append(
-            'Dropbox-API-Arg',
-            JSON.stringify({ url: input }),
-          )
-          const response = await fetch(
-            'https://content.dropboxapi.com/2/sharing/get_shared_link_file',
-            newInit,
-          )
-          if (!response.ok) {
-            throw new Error(await getDescriptiveErrorMessage(response))
-          }
-          return response
-        }
-      },
-      /**
-       * #action
-       */
-      async validateToken(
-        token: string,
-        location: UriLocation,
-      ): Promise<string> {
-        const response = await fetch(
-          'https://api.dropboxapi.com/2/sharing/get_shared_link_metadata',
-          {
-            method: 'POST',
-            headers: {
-              Authorization: `Bearer ${token}`,
-              'Content-Type': 'application/json',
-            },
-            body: JSON.stringify({
-              url: location.uri,
-            }),
-          },
-        )
-        if (!response.ok) {
-          const refreshToken = self.retrieveRefreshToken()
-          if (refreshToken) {
-            self.removeRefreshToken()
-            const newToken = await self.exchangeRefreshForAccessToken(
-              refreshToken,
-            )
-            return this.validateToken(newToken, location)
-          }
-          throw new Error(
-            await getDescriptiveErrorMessage(
-              response,
-              'Token could not be validated',
-            ),
-          )
-        }
-        return token
-      },
-    }))
-}
-
-export default stateModelFactory
-export type DropboxOAuthStateModel = ReturnType<typeof stateModelFactory>
-export type DropboxOAuthModel = Instance<DropboxOAuthStateModel>

package/src/DropboxOAuthModel/util.ts

@@ -1,36 +0,0 @@
-import { getResponseError } from '../util'
-
-interface DropboxError {
-  error_summary: string
-  error: {
-    '.tag': string
-  }
-}
-
-/**
- * Error messages from
- * https://www.dropbox.com/developers/documentation/http/documentation#sharing-get_shared_link_file
- * */
-const dropboxErrorMessages: Record<string, string | undefined> = {
-  shared_link_not_found: "The shared link wasn't found.",
-  shared_link_access_denied:
-    'The caller is not allowed to access this shared link.',
-  unsupported_link_type:
-    'This type of link is not supported; use files/export instead.',
-  shared_link_is_directory: 'Directories cannot be retrieved by this endpoint.',
-}
-
-export async function getDescriptiveErrorMessage(
-  response: Response,
-  reason?: string,
-) {
-  let errorMessage = ''
-  try {
-    const err = JSON.parse(await response.text()) as DropboxError
-    const tag = err.error['.tag']
-    errorMessage = dropboxErrorMessages[tag] || tag
-  } catch (error) {
-    /* do nothing */
-  }
-  return getResponseError({ response, reason, statusText: errorMessage })
-}

package/src/ExternalTokenModel/ExternalTokenEntryForm.tsx

@@ -1,55 +0,0 @@
-import React, { useState } from 'react'
-import { Button, DialogContent, DialogActions, TextField } from '@mui/material'
-import { Dialog } from '@jbrowse/core/ui'
-
-export const ExternalTokenEntryForm = ({
-  internetAccountId,
-  handleClose,
-}: {
-  internetAccountId: string
-  handleClose: (token?: string) => void
-}) => {
-  const [token, setToken] = useState('')
-
-  return (
-    <Dialog
-      open
-      maxWidth="xl"
-      data-testid="externalToken-form"
-      title={`Enter token for ${internetAccountId}`}
-    >
-      <DialogContent style={{ display: 'flex', flexDirection: 'column' }}>
-        <TextField
-          required
-          label="Enter Token"
-          variant="outlined"
-          inputProps={{ 'data-testid': 'entry-externalToken' }}
-          onChange={event => setToken(event.target.value)}
-          margin="dense"
-        />
-      </DialogContent>
-      <DialogActions>
-        <Button
-          variant="contained"
-          color="primary"
-          type="submit"
-          disabled={!token}
-          onClick={() => {
-            if (token) {
-              handleClose(token)
-            }
-          }}
-        >
-          Add
-        </Button>
-        <Button
-          variant="contained"
-          color="secondary"
-          onClick={() => handleClose()}
-        >
-          Cancel
-        </Button>
-      </DialogActions>
-    </Dialog>
-  )
-}

package/src/ExternalTokenModel/configSchema.ts

@@ -1,36 +0,0 @@
-import { ConfigurationSchema } from '@jbrowse/core/configuration'
-import { Instance } from 'mobx-state-tree'
-import { BaseInternetAccountConfig } from '@jbrowse/core/pluggableElementTypes/models'
-
-/**
- * #config ExternalTokenInternetAccount
- */
-function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
-
-const ExternalTokenConfigSchema = ConfigurationSchema(
-  'ExternalTokenInternetAccount',
-  {
-    /**
-     * #slot
-     */
-    validateWithHEAD: {
-      description: 'validate the token with a HEAD request before using it',
-      type: 'boolean',
-      defaultValue: true,
-    },
-  },
-  {
-    /**
-     * #baseConfiguration
-     */
-    baseConfiguration: BaseInternetAccountConfig,
-    explicitlyTyped: true,
-  },
-)
-
-export type ExternalTokenInternetAccountConfigModel =
-  typeof ExternalTokenConfigSchema
-
-export type ExternalTokenInternetAccountConfig =
-  Instance<ExternalTokenInternetAccountConfigModel>
-export default ExternalTokenConfigSchema

package/src/ExternalTokenModel/index.ts

@@ -1,2 +0,0 @@
-export { default as configSchema } from './configSchema'
-export { default as modelFactory } from './model'

package/src/ExternalTokenModel/model.tsx

@@ -1,70 +0,0 @@
-import { ConfigurationReference, getConf } from '@jbrowse/core/configuration'
-import { InternetAccount } from '@jbrowse/core/pluggableElementTypes/models'
-import { UriLocation } from '@jbrowse/core/util/types'
-import { ExternalTokenInternetAccountConfigModel } from './configSchema'
-import { Instance, types, getRoot } from 'mobx-state-tree'
-
-import { ExternalTokenEntryForm } from './ExternalTokenEntryForm'
-
-const stateModelFactory = (
-  configSchema: ExternalTokenInternetAccountConfigModel,
-) => {
-  return InternetAccount.named('ExternalTokenInternetAccount')
-    .props({
-      type: types.literal('ExternalTokenInternetAccount'),
-      configuration: ConfigurationReference(configSchema),
-    })
-    .views(self => ({
-      get validateWithHEAD(): boolean {
-        return getConf(self, 'validateWithHEAD')
-      },
-    }))
-    .actions(self => ({
-      getTokenFromUser(
-        resolve: (token: string) => void,
-        reject: (error: Error) => void,
-      ) {
-        // eslint-disable-next-line @typescript-eslint/no-explicit-any
-        const { session } = getRoot<any>(self)
-        session.queueDialog((doneCallback: () => void) => [
-          ExternalTokenEntryForm,
-          {
-            internetAccountId: self.internetAccountId,
-            handleClose: (token: string) => {
-              if (token) {
-                resolve(token)
-              } else {
-                reject(new Error('user cancelled entry'))
-              }
-              doneCallback()
-            },
-          },
-        ])
-      },
-      async validateToken(token: string, location: UriLocation) {
-        if (!self.validateWithHEAD) {
-          return token
-        }
-        const newInit = self.addAuthHeaderToInit({ method: 'HEAD' }, token)
-        const response = await fetch(location.uri, newInit)
-        if (!response.ok) {
-          let errorMessage
-          try {
-            errorMessage = await response.text()
-          } catch (error) {
-            errorMessage = ''
-          }
-          throw new Error(
-            `Token could not be validated — ${response.status} (${
-              response.statusText
-            })${errorMessage ? ` (${errorMessage})` : ''}`,
-          )
-        }
-        return token
-      },
-    }))
-}
-
-export default stateModelFactory
-export type ExternalTokenStateModel = ReturnType<typeof stateModelFactory>
-export type ExternalTokenModel = Instance<ExternalTokenStateModel>

package/src/GoogleDriveOAuthModel/GoogleDriveFilehandle.ts

@@ -1,38 +0,0 @@
-import { RemoteFileWithRangeCache } from '@jbrowse/core/util/io'
-import {
-  FilehandleOptions,
-  Stats,
-  PolyfilledResponse,
-} from 'generic-filehandle'
-
-export interface RequestInitWithMetadata extends RequestInit {
-  metadataOnly?: boolean
-}
-
-interface GoogleDriveFilehandleOptions extends FilehandleOptions {
-  fetch(
-    input: RequestInfo,
-    opts?: RequestInitWithMetadata,
-  ): Promise<PolyfilledResponse>
-}
-
-export class GoogleDriveFile extends RemoteFileWithRangeCache {
-  private statsPromise: Promise<{ size: number }>
-  constructor(source: string, opts: GoogleDriveFilehandleOptions) {
-    super(source, opts)
-    this.statsPromise = this.fetch(source, {
-      metadataOnly: true,
-    }).then((response: Response) => response.json())
-  }
-
-  async fetch(
-    input: RequestInfo,
-    opts?: RequestInitWithMetadata,
-  ): Promise<PolyfilledResponse> {
-    return super.fetch(input, opts)
-  }
-
-  async stat(): Promise<Stats> {
-    return this.statsPromise
-  }
-}

package/src/GoogleDriveOAuthModel/configSchema.ts

@@ -1,61 +0,0 @@
-import { ConfigurationSchema } from '@jbrowse/core/configuration'
-import { Instance } from 'mobx-state-tree'
-import OAuthConfigSchema from '../OAuthModel/configSchema'
-
-/**
- * #config GoogleDriveOAuthInternetAccount
- */
-function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
-
-const GoogleDriveOAuthConfigSchema = ConfigurationSchema(
-  'GoogleDriveOAuthInternetAccount',
-  {
-    /**
-     * #slot
-     */
-    authEndpoint: {
-      description: 'the authorization code endpoint of the internet account',
-      type: 'string',
-      defaultValue: 'https://accounts.google.com/o/oauth2/v2/auth',
-    },
-    /**
-     * #slot
-     */
-    scopes: {
-      description: 'optional scopes for the authorization call',
-      type: 'string',
-      defaultValue: 'https://www.googleapis.com/auth/drive.readonly',
-    },
-    /**
-     * #slot
-     */
-    domains: {
-      description:
-        'array of valid domains the url can contain to use this account',
-      type: 'stringArray',
-      defaultValue: ['drive.google.com"'],
-    },
-    /**
-     * #slot
-     */
-    responseType: {
-      description: 'the type of response from the authorization endpoint',
-      type: 'string',
-      defaultValue: 'token',
-    },
-  },
-  {
-    /**
-     * #baseConfiguration
-     */
-    baseConfiguration: OAuthConfigSchema,
-    explicitlyTyped: true,
-  },
-)
-
-export type GoogleDriveOAuthInternetAccountConfigModel =
-  typeof GoogleDriveOAuthConfigSchema
-
-export type GoogleDriveOAuthInternetAccountConfig =
-  Instance<GoogleDriveOAuthInternetAccountConfigModel>
-export default GoogleDriveOAuthConfigSchema

package/src/GoogleDriveOAuthModel/index.ts

@@ -1,2 +0,0 @@
-export { default as configSchema } from './configSchema'
-export { default as modelFactory } from './model'

package/src/GoogleDriveOAuthModel/model.tsx

@@ -1,124 +0,0 @@
-import React from 'react'
-import { ConfigurationReference } from '@jbrowse/core/configuration'
-import { Instance, types } from 'mobx-state-tree'
-import { UriLocation } from '@jbrowse/core/util/types'
-import { SvgIconProps, SvgIcon } from '@mui/material'
-
-// locals
-import { GoogleDriveOAuthInternetAccountConfigModel } from './configSchema'
-import baseModel from '../OAuthModel/model'
-import { configSchema as OAuthConfigSchema } from '../OAuthModel'
-import { getDescriptiveErrorMessage } from './util'
-import { GoogleDriveFile } from './GoogleDriveFilehandle'
-
-export interface RequestInitWithMetadata extends RequestInit {
-  metadataOnly?: boolean
-}
-
-function GoogleDriveIcon(props: SvgIconProps) {
-  return (
-    <SvgIcon {...props}>
-      <path d="M7.71,3.5L1.15,15L4.58,21L11.13,9.5M9.73,15L6.3,21H19.42L22.85,15M22.28,14L15.42,2H8.58L8.57,2L15.43,14H22.28Z" />
-    </SvgIcon>
-  )
-}
-
-function getUri(str: string) {
-  const urlId = str.match(/[-\w]{25,}/)
-  return `https://www.googleapis.com/drive/v3/files/${urlId}`
-}
-
-/**
- * #stateModel GoogleDriveOAuthInternetAccount
- */
-export default function stateModelFactory(
-  configSchema: GoogleDriveOAuthInternetAccountConfigModel,
-) {
-  return baseModel(OAuthConfigSchema)
-    .named('GoogleDriveOAuthInternetAccount')
-    .props({
-      /**
-       * #property
-       */
-      type: types.literal('GoogleDriveOAuthInternetAccount'),
-      /**
-       * #property
-       */
-      configuration: ConfigurationReference(configSchema),
-    })
-    .views(() => ({
-      /**
-       * #getter
-       * The FileSelector icon for Google drive
-       */
-      get toggleContents() {
-        return <GoogleDriveIcon />
-      },
-      /**
-       * #getter
-       */
-      get selectorLabel() {
-        return 'Enter Google Drive share link'
-      },
-    }))
-    .actions(self => ({
-      /**
-       * #method
-       */
-      getFetcher(location?: UriLocation) {
-        return async (input: RequestInfo, init?: RequestInitWithMetadata) => {
-          const driveUrl = new URL(getUri(String(input)))
-          const searchParams = new URLSearchParams()
-          if (init?.metadataOnly) {
-            searchParams.append('fields', 'size')
-          } else {
-            searchParams.append('alt', 'media')
-          }
-          driveUrl.search = searchParams.toString()
-          const authToken = await self.getToken(location)
-          const response = await fetch(
-            driveUrl,
-            self.addAuthHeaderToInit(
-              { ...init, method: 'GET', credentials: 'same-origin' },
-              authToken,
-            ),
-          )
-          if (!response.ok) {
-            throw new Error(await getDescriptiveErrorMessage(response))
-          }
-          return response
-        }
-      },
-      /**
-       * #method
-       */
-      openLocation(location: UriLocation) {
-        return new GoogleDriveFile(location.uri, {
-          fetch: this.getFetcher(location),
-        })
-      },
-      /**
-       * #action
-       */
-      async validateToken(token: string, location: UriLocation) {
-        const response = await fetch(getUri(location.uri), {
-          headers: {
-            Authorization: `Bearer ${token}`,
-            'Content-Type': 'application/x-www-form-urlencoded',
-          },
-        })
-        if (!response.ok) {
-          throw new Error(
-            await getDescriptiveErrorMessage(
-              response,
-              'Token could not be validated',
-            ),
-          )
-        }
-        return token
-      },
-    }))
-}
-
-export type GoogleDriveOAuthStateModel = ReturnType<typeof stateModelFactory>
-export type GoogleDriveOAuthModel = Instance<GoogleDriveOAuthStateModel>