@jbrowse/plugin-authentication 2.5.0 → 2.6.1

package/esm/GoogleDriveOAuthModel/model.js

@@ -1,70 +1,57 @@
 import React from 'react';
 import { ConfigurationReference } from '@jbrowse/core/configuration';
 import { types } from 'mobx-state-tree';
-import { RemoteFileWithRangeCache } from '@jbrowse/core/util/io';
 import { SvgIcon } from '@mui/material';
 import baseModel from '../OAuthModel/model';
 import { configSchema as OAuthConfigSchema } from '../OAuthModel';
-export class GoogleDriveFile extends RemoteFileWithRangeCache {
-    constructor(source, opts) {
-        super(source, opts);
-        this.statsPromise = this.fetch(source, {
-            metadataOnly: true,
-        }).then((response) => response.json());
-    }
-    async fetch(input, opts) {
-        return super.fetch(input, opts);
-    }
-    async stat() {
-        return this.statsPromise;
-    }
-}
+import { getDescriptiveErrorMessage } from './util';
+import { GoogleDriveFile } from './GoogleDriveFilehandle';
 function GoogleDriveIcon(props) {
     return (React.createElement(SvgIcon, { ...props },
         React.createElement("path", { d: "M7.71,3.5L1.15,15L4.58,21L11.13,9.5M9.73,15L6.3,21H19.42L22.85,15M22.28,14L15.42,2H8.58L8.57,2L15.43,14H22.28Z" })));
 }
-async function getDescriptiveErrorMessage(response) {
-    let errorMessage;
-    try {
-        errorMessage = await response.text();
-    }
-    catch (error) {
-        errorMessage = '';
-    }
-    if (errorMessage) {
-        let errorMessageParsed;
-        try {
-            errorMessageParsed = JSON.parse(errorMessage);
-        }
-        catch (error) {
-            errorMessageParsed = undefined;
-        }
-        if (errorMessageParsed) {
-            errorMessage = errorMessageParsed.error.message;
-        }
-    }
-    return `Network response failure — ${response.status} (${response.statusText})${errorMessage ? ` (${errorMessage})` : ''}`;
+function getUri(str) {
+    const urlId = str.match(/[-\w]{25,}/);
+    return `https://www.googleapis.com/drive/v3/files/${urlId}`;
 }
-const stateModelFactory = (configSchema) => {
+/**
+ * #stateModel GoogleDriveOAuthInternetAccount
+ */
+export default function stateModelFactory(configSchema) {
     return baseModel(OAuthConfigSchema)
         .named('GoogleDriveOAuthInternetAccount')
         .props({
+        /**
+         * #property
+         */
         type: types.literal('GoogleDriveOAuthInternetAccount'),
+        /**
+         * #property
+         */
         configuration: ConfigurationReference(configSchema),
     })
         .views(() => ({
+        /**
+         * #getter
+         * The FileSelector icon for Google drive
+         */
         get toggleContents() {
             return React.createElement(GoogleDriveIcon, null);
         },
+        /**
+         * #getter
+         */
         get selectorLabel() {
             return 'Enter Google Drive share link';
         },
     }))
         .actions(self => ({
+        /**
+         * #method
+         */
         getFetcher(location) {
             return async (input, init) => {
-                const urlId = String(input).match(/[-\w]{25,}/);
-                const driveUrl = new URL(`https://www.googleapis.com/drive/v3/files/${urlId}`);
+                const driveUrl = new URL(getUri(String(input)));
                 const searchParams = new URLSearchParams();
                 if (init === null || init === void 0 ? void 0 : init.metadataOnly) {
                     searchParams.append('fields', 'size');
@@ -74,35 +61,36 @@ const stateModelFactory = (configSchema) => {
                 }
                 driveUrl.search = searchParams.toString();
                 const authToken = await self.getToken(location);
-                const newInit = self.addAuthHeaderToInit({ ...init, method: 'GET', credentials: 'same-origin' }, authToken);
-                const response = await fetch(driveUrl.toString(), newInit);
+                const response = await fetch(driveUrl, self.addAuthHeaderToInit({ ...init, method: 'GET', credentials: 'same-origin' }, authToken));
                 if (!response.ok) {
-                    const message = await getDescriptiveErrorMessage(response);
-                    throw new Error(message);
+                    throw new Error(await getDescriptiveErrorMessage(response));
                 }
                 return response;
             };
         },
+        /**
+         * #method
+         */
         openLocation(location) {
             return new GoogleDriveFile(location.uri, {
                 fetch: this.getFetcher(location),
             });
         },
+        /**
+         * #action
+         */
         async validateToken(token, location) {
-            const urlId = location.uri.match(/[-\w]{25,}/);
-            const response = await fetch(`https://www.googleapis.com/drive/v3/files/${urlId}`, {
+            const response = await fetch(getUri(location.uri), {
                 headers: {
                     Authorization: `Bearer ${token}`,
                     'Content-Type': 'application/x-www-form-urlencoded',
                 },
             });
             if (!response.ok) {
-                const message = await getDescriptiveErrorMessage(response);
-                throw new Error(`Token could not be validated. ${message}`);
+                throw new Error(await getDescriptiveErrorMessage(response, 'Token could not be validated'));
             }
             return token;
         },
     }));
-};
-export default stateModelFactory;
+}
 //# sourceMappingURL=model.js.map

package/esm/GoogleDriveOAuthModel/model.js.map

@@ -1 +1 @@
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package/esm/GoogleDriveOAuthModel/util.d.ts

@@ -0,0 +1 @@
+export declare function getDescriptiveErrorMessage(response: Response, reason?: string): Promise<string>;

package/esm/GoogleDriveOAuthModel/util.js

@@ -0,0 +1,13 @@
+import { getResponseError } from '../util';
+export async function getDescriptiveErrorMessage(response, reason) {
+    let errorMessage = '';
+    try {
+        const err = JSON.parse(await response.text());
+        errorMessage = err.error.message;
+    }
+    catch (error) {
+        /* do nothing */
+    }
+    return getResponseError({ response, reason, statusText: errorMessage });
+}
+//# sourceMappingURL=util.js.map

package/esm/GoogleDriveOAuthModel/util.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../src/GoogleDriveOAuthModel/util.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,gBAAgB,EAAE,MAAM,SAAS,CAAA;AAgB1C,MAAM,CAAC,KAAK,UAAU,0BAA0B,CAC9C,QAAkB,EAClB,MAAe;IAEf,IAAI,YAAY,GAAG,EAAE,CAAA;IACrB,IAAI;QACF,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAqB,CAAA;QACjE,YAAY,GAAG,GAAG,CAAC,KAAK,CAAC,OAAO,CAAA;KACjC;IAAC,OAAO,KAAK,EAAE;QACd,gBAAgB;KACjB;IACD,OAAO,gBAAgB,CAAC,EAAE,QAAQ,EAAE,MAAM,EAAE,UAAU,EAAE,YAAY,EAAE,CAAC,CAAA;AACzE,CAAC"}

package/esm/HTTPBasicModel/HTTPBasicLoginForm.d.ts

@@ -1,4 +1,5 @@
+import React from 'react';
 export declare const HTTPBasicLoginForm: ({ internetAccountId, handleClose, }: {
     internetAccountId: string;
     handleClose: (arg?: string) => void;
-}) => JSX.Element;
+}) => React.JSX.Element;

package/esm/HTTPBasicModel/HTTPBasicLoginForm.js

@@ -1,28 +1,24 @@
 import React, { useState } from 'react';
-import { Button, Dialog, DialogContent, DialogTitle, DialogActions, TextField, } from '@mui/material';
+import { Button, DialogContent, DialogActions, TextField } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
 export const HTTPBasicLoginForm = ({ internetAccountId, handleClose, }) => {
     const [username, setUsername] = useState('');
     const [password, setPassword] = useState('');
-    function onSubmit(event) {
-        if (username && password) {
-            handleClose(btoa(`${username}:${password}`));
-        }
-        else {
-            handleClose();
-        }
-        event.preventDefault();
-    }
-    return (React.createElement(React.Fragment, null,
-        React.createElement(Dialog, { open: true, maxWidth: "xl", "data-testid": "login-httpbasic" },
-            React.createElement(DialogTitle, null,
-                "Log In for ",
-                internetAccountId),
-            React.createElement("form", { onSubmit: onSubmit },
-                React.createElement(DialogContent, { style: { display: 'flex', flexDirection: 'column' } },
-                    React.createElement(TextField, { required: true, label: "Username", variant: "outlined", inputProps: { 'data-testid': 'login-httpbasic-username' }, onChange: event => setUsername(event.target.value), margin: "dense" }),
-                    React.createElement(TextField, { required: true, label: "Password", type: "password", autoComplete: "current-password", variant: "outlined", inputProps: { 'data-testid': 'login-httpbasic-password' }, onChange: event => setPassword(event.target.value), margin: "dense" })),
-                React.createElement(DialogActions, null,
-                    React.createElement(Button, { variant: "contained", color: "primary", type: "submit" }, "Submit"),
-                    React.createElement(Button, { variant: "contained", type: "submit", onClick: () => handleClose() }, "Cancel"))))));
+    return (React.createElement(Dialog, { open: true, maxWidth: "xl", "data-testid": "login-httpbasic", title: `Log In for ${internetAccountId}` },
+        React.createElement("form", { onSubmit: event => {
+                if (username && password) {
+                    handleClose(btoa(`${username}:${password}`));
+                }
+                else {
+                    handleClose();
+                }
+                event.preventDefault();
+            } },
+            React.createElement(DialogContent, { style: { display: 'flex', flexDirection: 'column' } },
+                React.createElement(TextField, { required: true, label: "Username", variant: "outlined", inputProps: { 'data-testid': 'login-httpbasic-username' }, onChange: event => setUsername(event.target.value), margin: "dense" }),
+                React.createElement(TextField, { required: true, label: "Password", type: "password", autoComplete: "current-password", variant: "outlined", inputProps: { 'data-testid': 'login-httpbasic-password' }, onChange: event => setPassword(event.target.value), margin: "dense" })),
+            React.createElement(DialogActions, null,
+                React.createElement(Button, { variant: "contained", color: "primary", type: "submit" }, "Submit"),
+                React.createElement(Button, { variant: "contained", color: "secondary", type: "submit", onClick: () => handleClose() }, "Cancel")))));
 };
 //# sourceMappingURL=HTTPBasicLoginForm.js.map

package/esm/HTTPBasicModel/HTTPBasicLoginForm.js.map

@@ -1 +1 @@
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package/esm/HTTPBasicModel/model.d.ts

@@ -1,6 +1,9 @@
 /// <reference types="react" />
 import { UriLocation } from '@jbrowse/core/util/types';
 import { Instance } from 'mobx-state-tree';
+/**
+ * #stateModel HTTPBasicInternetAccount
+ */
 declare const stateModelFactory: (configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     tokenType: {
         description: string;
@@ -10,7 +13,9 @@ declare const stateModelFactory: (configSchema: import("@jbrowse/core/configurat
     validateWithHEAD: {
         description: string;
         type: string;
-        defaultValue: boolean;
+        defaultValue: boolean; /**
+         * #property
+         */
     };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     name: {
@@ -36,6 +41,9 @@ declare const stateModelFactory: (configSchema: import("@jbrowse/core/configurat
     domains: {
         description: string;
         type: string;
+        /**
+         * #property
+         */
         defaultValue: never[];
     };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "internetAccountId">>, undefined>>) => import("mobx-state-tree").IModelType<{
@@ -46,12 +54,16 @@ declare const stateModelFactory: (configSchema: import("@jbrowse/core/configurat
             description: string;
             type: string;
             defaultValue: string;
-        };
+        }; /**
+         * #property
+         */
         description: {
             description: string;
             type: string;
             defaultValue: string;
-        };
+        }; /**
+         * #getter
+         */
         authHeader: {
             description: string;
             type: string;
@@ -69,7 +81,13 @@ declare const stateModelFactory: (configSchema: import("@jbrowse/core/configurat
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "internetAccountId">>;
 } & {
+    /**
+     * #property
+     */
     type: import("mobx-state-tree").ISimpleType<"HTTPBasicInternetAccount">;
+    /**
+     * #property
+     */
     configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         tokenType: {
             description: string;
@@ -79,7 +97,9 @@ declare const stateModelFactory: (configSchema: import("@jbrowse/core/configurat
         validateWithHEAD: {
             description: string;
             type: string;
-            defaultValue: boolean;
+            defaultValue: boolean; /**
+             * #property
+             */
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         name: {
@@ -105,6 +125,9 @@ declare const stateModelFactory: (configSchema: import("@jbrowse/core/configurat
         domains: {
             description: string;
             type: string;
+            /**
+             * #property
+             */
             defaultValue: never[];
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "internetAccountId">>, undefined>>;
@@ -157,9 +180,18 @@ declare const stateModelFactory: (configSchema: import("@jbrowse/core/configurat
 } & {
     openLocation(location: UriLocation): import("@jbrowse/core/util/io").RemoteFileWithRangeCache;
 } & {
+    /**
+     * #getter
+     */
     readonly validateWithHEAD: boolean;
 } & {
+    /**
+     * #action
+     */
     getTokenFromUser(resolve: (token: string) => void, reject: (error: Error) => void): void;
+    /**
+     * #action
+     */
     validateToken(token: string, location: UriLocation): Promise<string>;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export default stateModelFactory;

package/esm/HTTPBasicModel/model.js

@@ -2,18 +2,34 @@ import { ConfigurationReference, getConf } from '@jbrowse/core/configuration';
 import { InternetAccount } from '@jbrowse/core/pluggableElementTypes/models';
 import { types, getRoot } from 'mobx-state-tree';
 import { HTTPBasicLoginForm } from './HTTPBasicLoginForm';
+import { getResponseError } from '../util';
+/**
+ * #stateModel HTTPBasicInternetAccount
+ */
 const stateModelFactory = (configSchema) => {
     return InternetAccount.named('HTTPBasicInternetAccount')
         .props({
+        /**
+         * #property
+         */
         type: types.literal('HTTPBasicInternetAccount'),
+        /**
+         * #property
+         */
         configuration: ConfigurationReference(configSchema),
     })
         .views(self => ({
+        /**
+         * #getter
+         */
         get validateWithHEAD() {
             return getConf(self, 'validateWithHEAD');
         },
     }))
         .actions(self => ({
+        /**
+         * #action
+         */
         getTokenFromUser(resolve, reject) {
             // eslint-disable-next-line @typescript-eslint/no-explicit-any
             const { session } = getRoot(self);
@@ -26,13 +42,16 @@ const stateModelFactory = (configSchema) => {
                             resolve(token);
                         }
                         else {
-                            reject(new Error('user cancelled entry'));
+                            reject(new Error('User cancelled entry'));
                         }
                         doneCallback();
                     },
                 },
             ]);
         },
+        /**
+         * #action
+         */
         async validateToken(token, location) {
             if (!self.validateWithHEAD) {
                 return token;
@@ -40,14 +59,10 @@ const stateModelFactory = (configSchema) => {
             const newInit = self.addAuthHeaderToInit({ method: 'HEAD' }, token);
             const response = await fetch(location.uri, newInit);
             if (!response.ok) {
-                let errorMessage;
-                try {
-                    errorMessage = await response.text();
-                }
-                catch (error) {
-                    errorMessage = '';
-                }
-                throw new Error(`Error validating token — ${response.status} (${response.statusText})${errorMessage ? ` (${errorMessage})` : ''}`);
+                throw new Error(await getResponseError({
+                    response,
+                    reason: 'Error validating token',
+                }));
             }
             return token;
         },

package/esm/HTTPBasicModel/model.js.map

@@ -1 +1 @@
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+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HTTPBasicModel/model.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AAC7E,OAAO,EAAE,eAAe,EAAE,MAAM,4CAA4C,CAAA;AAE5E,OAAO,EAAY,KAAK,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAI1D,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAA;AACzD,OAAO,EAAE,gBAAgB,EAAE,MAAM,SAAS,CAAA;AAE1C;;GAEG;AACH,MAAM,iBAAiB,GAAG,CACxB,YAAiD,EACjD,EAAE;IACF,OAAO,eAAe,CAAC,KAAK,CAAC,0BAA0B,CAAC;SACrD,KAAK,CAAC;QACL;;WAEG;QACH,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,0BAA0B,CAAC;QAC/C;;WAEG;QACH,aAAa,EAAE,sBAAsB,CAAC,YAAY,CAAC;KACpD,CAAC;SACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,gBAAgB;YAClB,OAAO,OAAO,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QAC1C,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,gBAAgB,CACd,OAAgC,EAChC,MAA8B;YAE9B,8DAA8D;YAC9D,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAAM,IAAI,CAAC,CAAA;YACtC,OAAO,CAAC,WAAW,CAAC,CAAC,YAAwB,EAAE,EAAE,CAAC;gBAChD,kBAAkB;gBAClB;oBACE,iBAAiB,EAAE,IAAI,CAAC,iBAAiB;oBACzC,WAAW,EAAE,CAAC,KAAa,EAAE,EAAE;wBAC7B,IAAI,KAAK,EAAE;4BACT,OAAO,CAAC,KAAK,CAAC,CAAA;yBACf;6BAAM;4BACL,MAAM,CAAC,IAAI,KAAK,CAAC,sBAAsB,CAAC,CAAC,CAAA;yBAC1C;wBACD,YAAY,EAAE,CAAA;oBAChB,CAAC;iBACF;aACF,CAAC,CAAA;QACJ,CAAC;QACD;;WAEG;QACH,KAAK,CAAC,aAAa,CAAC,KAAa,EAAE,QAAqB;YACtD,IAAI,CAAC,IAAI,CAAC,gBAAgB,EAAE;gBAC1B,OAAO,KAAK,CAAA;aACb;YACD,MAAM,OAAO,GAAG,IAAI,CAAC,mBAAmB,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,CAAA;YACnE,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,QAAQ,CAAC,GAAG,EAAE,OAAO,CAAC,CAAA;YACnD,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE;gBAChB,MAAM,IAAI,KAAK,CACb,MAAM,gBAAgB,CAAC;oBACrB,QAAQ;oBACR,MAAM,EAAE,wBAAwB;iBACjC,CAAC,CACH,CAAA;aACF;YACD,OAAO,KAAK,CAAA;QACd,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC,CAAA;AAED,eAAe,iBAAiB,CAAA"}

package/esm/OAuthModel/configSchema.d.ts

@@ -64,14 +64,6 @@ declare const OAuthConfigSchema: import("@jbrowse/core/configuration/configurati
         type: string;
         defaultValue: string;
     };
-    /**
-     * #slot
-     */
-    hasRefreshToken: {
-        description: string;
-        type: string;
-        defaultValue: boolean;
-    };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     name: {
         description: string;

package/esm/OAuthModel/configSchema.js

@@ -65,18 +65,10 @@ const OAuthConfigSchema = ConfigurationSchema('OAuthInternetAccount', {
      * #slot
      */
     responseType: {
-        description: 'the type of response from the authorization endpoint',
+        description: "the type of response from the authorization endpoint. can be 'token' or 'code'",
         type: 'string',
         defaultValue: 'code',
     },
-    /**
-     * #slot
-     */
-    hasRefreshToken: {
-        description: 'true if the endpoint can supply a refresh token',
-        type: 'boolean',
-        defaultValue: false,
-    },
 }, {
     /**
      * #baseConfiguration

package/esm/OAuthModel/configSchema.js.map

@@ -1 +1 @@
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