@jbrowse/plugin-arc 3.7.0 → 4.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (81) hide show
  1. package/esm/ArcRenderer/ArcRendering.d.ts +1 -1
  2. package/esm/ArcRenderer/ArcRendering.js +31 -54
  3. package/esm/ArcRenderer/configSchema.d.ts +3 -3
  4. package/esm/ArcRenderer/configSchema.js +1 -1
  5. package/esm/ArcRenderer/index.js +4 -4
  6. package/esm/ArcTooltip.d.ts +1 -1
  7. package/esm/ArcTooltip.js +1 -1
  8. package/esm/LinearArcDisplay/configSchema.d.ts +4 -4
  9. package/esm/LinearArcDisplay/configSchema.js +1 -1
  10. package/esm/LinearArcDisplay/index.js +2 -2
  11. package/esm/LinearArcDisplay/model.d.ts +961 -107
  12. package/esm/LinearArcDisplay/model.js +4 -7
  13. package/esm/LinearPairedArcDisplay/afterAttach.d.ts +1 -1
  14. package/esm/LinearPairedArcDisplay/afterAttach.js +2 -2
  15. package/esm/LinearPairedArcDisplay/components/Arcs.d.ts +1 -1
  16. package/esm/LinearPairedArcDisplay/components/Arcs.js +9 -11
  17. package/esm/LinearPairedArcDisplay/components/BaseDisplayComponent.d.ts +1 -1
  18. package/esm/LinearPairedArcDisplay/components/BaseDisplayComponent.js +7 -25
  19. package/esm/LinearPairedArcDisplay/components/ErrorActions.d.ts +4 -0
  20. package/esm/LinearPairedArcDisplay/components/ErrorActions.js +20 -0
  21. package/esm/LinearPairedArcDisplay/components/ErrorMessage.d.ts +5 -0
  22. package/esm/LinearPairedArcDisplay/components/ErrorMessage.js +9 -0
  23. package/esm/LinearPairedArcDisplay/components/LoadingBar.d.ts +1 -1
  24. package/esm/LinearPairedArcDisplay/components/LoadingBar.js +4 -4
  25. package/esm/LinearPairedArcDisplay/components/ReactComponent.d.ts +1 -1
  26. package/esm/LinearPairedArcDisplay/components/ReactComponent.js +3 -3
  27. package/esm/LinearPairedArcDisplay/components/util.js +6 -8
  28. package/esm/LinearPairedArcDisplay/configSchema.d.ts +3 -3
  29. package/esm/LinearPairedArcDisplay/fetchChains.d.ts +2 -2
  30. package/esm/LinearPairedArcDisplay/fetchChains.js +3 -1
  31. package/esm/LinearPairedArcDisplay/index.js +5 -4
  32. package/esm/LinearPairedArcDisplay/model.d.ts +143 -31
  33. package/esm/LinearPairedArcDisplay/model.js +4 -5
  34. package/esm/LinearPairedArcDisplay/renderSvg.d.ts +1 -1
  35. package/esm/LinearPairedArcDisplay/renderSvg.js +1 -1
  36. package/esm/LinearPairedArcDisplay/util.d.ts +1 -1
  37. package/esm/LinearPairedArcDisplay/util.js +3 -5
  38. package/esm/index.js +9 -12
  39. package/package.json +27 -31
  40. package/dist/ArcRenderer/ArcRenderer.d.ts +0 -3
  41. package/dist/ArcRenderer/ArcRenderer.js +0 -9
  42. package/dist/ArcRenderer/ArcRendering.d.ts +0 -15
  43. package/dist/ArcRenderer/ArcRendering.js +0 -120
  44. package/dist/ArcRenderer/configSchema.d.ts +0 -39
  45. package/dist/ArcRenderer/configSchema.js +0 -44
  46. package/dist/ArcRenderer/index.d.ts +0 -2
  47. package/dist/ArcRenderer/index.js +0 -17
  48. package/dist/ArcTooltip.d.ts +0 -4
  49. package/dist/ArcTooltip.js +0 -17
  50. package/dist/LinearArcDisplay/configSchema.d.ts +0 -31
  51. package/dist/LinearArcDisplay/configSchema.js +0 -14
  52. package/dist/LinearArcDisplay/index.d.ts +0 -2
  53. package/dist/LinearArcDisplay/index.js +0 -21
  54. package/dist/LinearArcDisplay/model.d.ts +0 -342
  55. package/dist/LinearArcDisplay/model.js +0 -91
  56. package/dist/LinearPairedArcDisplay/afterAttach.d.ts +0 -2
  57. package/dist/LinearPairedArcDisplay/afterAttach.js +0 -10
  58. package/dist/LinearPairedArcDisplay/components/Arcs.d.ts +0 -6
  59. package/dist/LinearPairedArcDisplay/components/Arcs.js +0 -106
  60. package/dist/LinearPairedArcDisplay/components/BaseDisplayComponent.d.ts +0 -6
  61. package/dist/LinearPairedArcDisplay/components/BaseDisplayComponent.js +0 -70
  62. package/dist/LinearPairedArcDisplay/components/LoadingBar.d.ts +0 -5
  63. package/dist/LinearPairedArcDisplay/components/LoadingBar.js +0 -25
  64. package/dist/LinearPairedArcDisplay/components/ReactComponent.d.ts +0 -6
  65. package/dist/LinearPairedArcDisplay/components/ReactComponent.js +0 -13
  66. package/dist/LinearPairedArcDisplay/components/util.d.ts +0 -17
  67. package/dist/LinearPairedArcDisplay/components/util.js +0 -66
  68. package/dist/LinearPairedArcDisplay/configSchema.d.ts +0 -35
  69. package/dist/LinearPairedArcDisplay/configSchema.js +0 -18
  70. package/dist/LinearPairedArcDisplay/fetchChains.d.ts +0 -27
  71. package/dist/LinearPairedArcDisplay/fetchChains.js +0 -21
  72. package/dist/LinearPairedArcDisplay/index.d.ts +0 -2
  73. package/dist/LinearPairedArcDisplay/index.js +0 -54
  74. package/dist/LinearPairedArcDisplay/model.d.ts +0 -129
  75. package/dist/LinearPairedArcDisplay/model.js +0 -105
  76. package/dist/LinearPairedArcDisplay/renderSvg.d.ts +0 -4
  77. package/dist/LinearPairedArcDisplay/renderSvg.js +0 -17
  78. package/dist/LinearPairedArcDisplay/util.d.ts +0 -27
  79. package/dist/LinearPairedArcDisplay/util.js +0 -119
  80. package/dist/index.d.ts +0 -6
  81. package/dist/index.js +0 -43
@@ -1,27 +1,27 @@
1
1
  import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
2
- export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
3
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
4
- type: import("mobx-state-tree").ISimpleType<string>;
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- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
6
- } & {
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- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
8
- } & {
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- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
10
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
11
- } & {
12
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
13
- key: import("mobx-state-tree").ISimpleType<string>;
14
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
15
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
16
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
17
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2
+ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
3
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
4
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
6
+ } & {
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+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
8
+ } & {
9
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
10
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
11
+ } & {
12
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
13
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
15
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
16
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
18
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  }, {
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- stopToken: string | undefined;
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+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
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  filled: boolean;
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  reactElement: React.ReactElement | undefined;
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  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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  layout: any;
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- status: string;
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+ blockStatusMessage: string;
25
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  error: unknown;
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  message: string | undefined;
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  maxHeightReached: boolean;
@@ -29,25 +29,32 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
29
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  model: {
30
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  error?: unknown;
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  reload: () => void;
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- message: React.ReactNode;
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- filled?: boolean;
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- status?: string;
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+ message?: React.ReactNode;
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+ statusMessage?: string;
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  reactElement?: React.ReactElement;
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+ isRenderingPending?: boolean;
36
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  };
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- }) => import("react/jsx-runtime").JSX.Element | undefined;
37
+ }) => import("react/jsx-runtime").JSX.Element;
38
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  renderProps: any;
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+ renderArgs: Record<string, unknown> | undefined;
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+ isRenderingPending: boolean;
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+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
39
42
  } & {
40
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  doReload(): void;
41
- afterAttach(): void;
42
- setStatus(message: string): void;
43
- setLoading(newStopToken: string): void;
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+ setStatusMessage(message: string): void;
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+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
44
46
  setMessage(messageText: string): void;
45
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  setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
46
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  setError(error: unknown): void;
47
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  reload(): void;
50
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
48
51
  beforeDestroy(): void;
49
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
50
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
52
+ } & {
53
+ readonly statusMessage: any;
54
+ } & {
55
+ afterAttach(): void;
56
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
57
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
51
58
  maxFeatureScreenDensity: {
52
59
  type: string;
53
60
  description: string;
@@ -74,34 +81,36 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
74
81
  description: string;
75
82
  defaultValue: never[];
76
83
  };
77
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
84
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
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+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
86
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
78
87
  } & {
79
- type: import("mobx-state-tree").ISimpleType<"LinearArcDisplay">;
88
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearArcDisplay">;
80
89
  configuration: AnyConfigurationSchemaType;
81
- displayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
90
+ displayMode: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
82
91
  }, {
83
92
  rendererTypeName: string;
84
93
  error: unknown;
85
- message: string | undefined;
94
+ statusMessage: string | undefined;
86
95
  } & {
87
96
  readonly RenderingComponent: React.FC<{
88
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  model: {
89
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  id: string;
90
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  type: string;
91
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  rpcDriverName: string | undefined;
92
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
101
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
93
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  rendererTypeName: string;
94
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  error: unknown;
95
- message: string | undefined;
96
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
97
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
98
- type: import("mobx-state-tree").ISimpleType<string>;
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- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
104
+ statusMessage: string | undefined;
105
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
106
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
107
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
100
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  }, {
101
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  rendererTypeName: string;
102
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  error: unknown;
103
- message: string | undefined;
104
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ statusMessage: string | undefined;
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+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
105
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  onHorizontalScroll?: () => void;
106
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  blockState?: Record<string, any>;
107
116
  }>;
@@ -110,30 +119,142 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
110
119
  id: string;
111
120
  type: string;
112
121
  rpcDriverName: string | undefined;
113
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
122
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
114
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  rendererTypeName: string;
115
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  error: unknown;
116
- message: string | undefined;
117
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
118
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
119
- type: import("mobx-state-tree").ISimpleType<string>;
120
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
125
+ statusMessage: string | undefined;
126
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
127
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
128
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
129
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
121
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  }, {
122
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  rendererTypeName: string;
123
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  error: unknown;
124
- message: string | undefined;
125
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ statusMessage: string | undefined;
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+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
126
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  }> | null;
127
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  readonly adapterConfig: any;
128
- readonly parentTrack: any;
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+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
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+ readonly parentDisplay: any;
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+ readonly effectiveRpcDriverName: any;
140
+ } & {
129
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  renderProps(): any;
142
+ renderingProps(): {
143
+ displayModel: {
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+ id: string;
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+ type: string;
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+ rpcDriverName: string | undefined;
147
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
148
+ rendererTypeName: string;
149
+ error: unknown;
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+ statusMessage: string | undefined;
151
+ } & {
152
+ readonly RenderingComponent: React.FC<{
153
+ model: {
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+ id: string;
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+ type: string;
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+ rpcDriverName: string | undefined;
157
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
158
+ rendererTypeName: string;
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+ error: unknown;
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+ statusMessage: string | undefined;
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+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
162
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
163
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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+ }, {
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+ rendererTypeName: string;
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+ error: unknown;
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+ statusMessage: string | undefined;
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+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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+ onHorizontalScroll?: () => void;
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+ blockState?: Record<string, any>;
172
+ }>;
173
+ readonly DisplayBlurb: React.FC<{
174
+ model: {
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+ id: string;
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+ type: string;
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+ rpcDriverName: string | undefined;
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+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
179
+ rendererTypeName: string;
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+ error: unknown;
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+ statusMessage: string | undefined;
182
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
183
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
184
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
185
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
186
+ }, {
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+ rendererTypeName: string;
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+ error: unknown;
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+ statusMessage: string | undefined;
190
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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+ }> | null;
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+ readonly adapterConfig: any;
193
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
194
+ readonly parentDisplay: any;
195
+ readonly effectiveRpcDriverName: any;
196
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
197
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
198
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
199
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
200
+ }, {
201
+ rendererTypeName: string;
202
+ error: unknown;
203
+ statusMessage: string | undefined;
204
+ } & {
205
+ readonly RenderingComponent: React.FC<{
206
+ model: {
207
+ id: string;
208
+ type: string;
209
+ rpcDriverName: string | undefined;
210
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
211
+ rendererTypeName: string;
212
+ error: unknown;
213
+ statusMessage: string | undefined;
214
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
215
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
216
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
217
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
218
+ }, {
219
+ rendererTypeName: string;
220
+ error: unknown;
221
+ statusMessage: string | undefined;
222
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
223
+ onHorizontalScroll?: () => void;
224
+ blockState?: Record<string, any>;
225
+ }>;
226
+ readonly DisplayBlurb: React.FC<{
227
+ model: {
228
+ id: string;
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+ type: string;
230
+ rpcDriverName: string | undefined;
231
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
232
+ rendererTypeName: string;
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+ error: unknown;
234
+ statusMessage: string | undefined;
235
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
236
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
237
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
238
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
239
+ }, {
240
+ rendererTypeName: string;
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+ error: unknown;
242
+ statusMessage: string | undefined;
243
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
244
+ }> | null;
245
+ readonly adapterConfig: any;
246
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
247
+ readonly parentDisplay: any;
248
+ readonly effectiveRpcDriverName: any;
249
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
250
+ };
130
251
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
131
252
  readonly DisplayMessageComponent: undefined | React.FC<any>;
132
253
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
133
254
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
134
255
  regionCannotBeRendered(): null;
135
256
  } & {
136
- setMessage(arg?: string): void;
257
+ setStatusMessage(arg?: string): void;
137
258
  setError(error?: unknown): void;
138
259
  setRpcDriverName(rpcDriverName: string): void;
139
260
  reload(): void;
@@ -168,12 +289,13 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
168
289
  readonly regionTooLarge: boolean;
169
290
  readonly regionTooLargeReason: string;
170
291
  } & {
171
- readonly statsReadyAndRegionNotTooLarge: boolean;
292
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
172
293
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
173
294
  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
174
295
  } & {
175
296
  mouseoverExtraInformation: string | undefined;
176
297
  featureIdUnderMouse: undefined | string;
298
+ subfeatureIdUnderMouse: undefined | string;
177
299
  contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
178
300
  } & {
179
301
  readonly DisplayMessageComponent: undefined | React.FC<any>;
@@ -182,27 +304,23 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
182
304
  } & {
183
305
  readonly renderDelay: number;
184
306
  readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
307
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
308
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
185
309
  readonly selectedFeatureId: string | undefined;
186
- copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
310
+ readonly featureWidgetType: {
311
+ type: string;
312
+ id: string;
313
+ };
187
314
  } & {
315
+ readonly showTooltipsEnabled: boolean;
188
316
  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
189
317
  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
190
- readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, [number, number, number, number] | [number, number, number, number, {
191
- label?: string;
192
- description?: string;
193
- refName: string;
194
- }]>;
318
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
319
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
195
320
  getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
196
- getFeatureByID(blockKey: string, id: string): ([number, number, number, number] | [number, number, number, number, {
197
- label?: string;
198
- description?: string;
199
- refName: string;
200
- }]) | undefined;
201
- searchFeatureByID(id: string): ([number, number, number, number] | [number, number, number, number, {
202
- label?: string;
203
- description?: string;
204
- refName: string;
205
- }]) | undefined;
321
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
322
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
323
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
206
324
  } & {
207
325
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
208
326
  deleteBlock(key: string): void;
@@ -210,13 +328,746 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
210
328
  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
211
329
  clearFeatureSelection(): void;
212
330
  setFeatureIdUnderMouse(feature?: string): void;
331
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
213
332
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
214
333
  setMouseoverExtraInformation(extra?: string): void;
334
+ setShowLegend(s: boolean): void;
335
+ setShowTooltips(arg: boolean): void;
215
336
  } & {
216
337
  reload(): Promise<void>;
338
+ } & {
339
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
340
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
217
341
  } & {
218
342
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
219
343
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
344
+ renderingProps(): {
345
+ displayModel: {
346
+ id: string;
347
+ type: string;
348
+ rpcDriverName: string | undefined;
349
+ heightPreConfig: number | undefined;
350
+ userBpPerPxLimit: number | undefined;
351
+ userByteSizeLimit: number | undefined;
352
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
353
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
354
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
355
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
356
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
357
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
358
+ }, {
359
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
360
+ filled: boolean;
361
+ reactElement: React.ReactElement | undefined;
362
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
363
+ layout: any;
364
+ blockStatusMessage: string;
365
+ error: unknown;
366
+ message: string | undefined;
367
+ maxHeightReached: boolean;
368
+ ReactComponent: ({ model, }: {
369
+ model: {
370
+ error?: unknown;
371
+ reload: () => void;
372
+ message?: React.ReactNode;
373
+ statusMessage?: string;
374
+ reactElement?: React.ReactElement;
375
+ isRenderingPending?: boolean;
376
+ };
377
+ }) => import("react/jsx-runtime").JSX.Element;
378
+ renderProps: any;
379
+ renderArgs: Record<string, unknown> | undefined;
380
+ isRenderingPending: boolean;
381
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
382
+ } & {
383
+ doReload(): void;
384
+ setStatusMessage(message: string): void;
385
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
386
+ setMessage(messageText: string): void;
387
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
388
+ setError(error: unknown): void;
389
+ reload(): void;
390
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
391
+ beforeDestroy(): void;
392
+ } & {
393
+ readonly statusMessage: any;
394
+ } & {
395
+ afterAttach(): void;
396
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
397
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
398
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
399
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
400
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
401
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
402
+ }, {
403
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
404
+ filled: boolean;
405
+ reactElement: React.ReactElement | undefined;
406
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
407
+ layout: any;
408
+ blockStatusMessage: string;
409
+ error: unknown;
410
+ message: string | undefined;
411
+ maxHeightReached: boolean;
412
+ ReactComponent: ({ model, }: {
413
+ model: {
414
+ error?: unknown;
415
+ reload: () => void;
416
+ message?: React.ReactNode;
417
+ statusMessage?: string;
418
+ reactElement?: React.ReactElement;
419
+ isRenderingPending?: boolean;
420
+ };
421
+ }) => import("react/jsx-runtime").JSX.Element;
422
+ renderProps: any;
423
+ renderArgs: Record<string, unknown> | undefined;
424
+ isRenderingPending: boolean;
425
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
426
+ } & {
427
+ doReload(): void;
428
+ setStatusMessage(message: string): void;
429
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
430
+ setMessage(messageText: string): void;
431
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
432
+ setError(error: unknown): void;
433
+ reload(): void;
434
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
435
+ beforeDestroy(): void;
436
+ } & {
437
+ readonly statusMessage: any;
438
+ } & {
439
+ afterAttach(): void;
440
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
441
+ configuration: {
442
+ [x: string]: any;
443
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
444
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
445
+ [x: string]: any;
446
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
447
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
448
+ [x: string]: any;
449
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
450
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
451
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
452
+ maxFeatureScreenDensity: {
453
+ type: string;
454
+ description: string;
455
+ defaultValue: number;
456
+ };
457
+ fetchSizeLimit: {
458
+ type: string;
459
+ defaultValue: number;
460
+ description: string;
461
+ };
462
+ height: {
463
+ type: string;
464
+ defaultValue: number;
465
+ description: string;
466
+ };
467
+ mouseover: {
468
+ type: string;
469
+ description: string;
470
+ defaultValue: string;
471
+ contextVariable: string[];
472
+ };
473
+ jexlFilters: {
474
+ type: string;
475
+ description: string;
476
+ defaultValue: never[];
477
+ };
478
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
479
+ showLegend: boolean | undefined;
480
+ showTooltips: boolean | undefined;
481
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
482
+ rendererTypeName: string;
483
+ error: unknown;
484
+ statusMessage: string | undefined;
485
+ } & {
486
+ readonly RenderingComponent: React.FC<{
487
+ model: {
488
+ id: string;
489
+ type: string;
490
+ rpcDriverName: string | undefined;
491
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
492
+ rendererTypeName: string;
493
+ error: unknown;
494
+ statusMessage: string | undefined;
495
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
496
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
497
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
498
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
499
+ }, {
500
+ rendererTypeName: string;
501
+ error: unknown;
502
+ statusMessage: string | undefined;
503
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
504
+ onHorizontalScroll?: () => void;
505
+ blockState?: Record<string, any>;
506
+ }>;
507
+ readonly DisplayBlurb: React.FC<{
508
+ model: {
509
+ id: string;
510
+ type: string;
511
+ rpcDriverName: string | undefined;
512
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
513
+ rendererTypeName: string;
514
+ error: unknown;
515
+ statusMessage: string | undefined;
516
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
517
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
518
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
519
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
520
+ }, {
521
+ rendererTypeName: string;
522
+ error: unknown;
523
+ statusMessage: string | undefined;
524
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
525
+ }> | null;
526
+ readonly adapterConfig: any;
527
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
528
+ readonly parentDisplay: any;
529
+ readonly effectiveRpcDriverName: any;
530
+ } & {
531
+ renderProps(): any;
532
+ renderingProps(): {
533
+ displayModel: {
534
+ id: string;
535
+ type: string;
536
+ rpcDriverName: string | undefined;
537
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
538
+ rendererTypeName: string;
539
+ error: unknown;
540
+ statusMessage: string | undefined;
541
+ } & {
542
+ readonly RenderingComponent: React.FC<{
543
+ model: {
544
+ id: string;
545
+ type: string;
546
+ rpcDriverName: string | undefined;
547
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
548
+ rendererTypeName: string;
549
+ error: unknown;
550
+ statusMessage: string | undefined;
551
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
552
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
553
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
554
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
555
+ }, {
556
+ rendererTypeName: string;
557
+ error: unknown;
558
+ statusMessage: string | undefined;
559
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
560
+ onHorizontalScroll?: () => void;
561
+ blockState?: Record<string, any>;
562
+ }>;
563
+ readonly DisplayBlurb: React.FC<{
564
+ model: {
565
+ id: string;
566
+ type: string;
567
+ rpcDriverName: string | undefined;
568
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
569
+ rendererTypeName: string;
570
+ error: unknown;
571
+ statusMessage: string | undefined;
572
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
573
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
574
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
575
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
576
+ }, {
577
+ rendererTypeName: string;
578
+ error: unknown;
579
+ statusMessage: string | undefined;
580
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
581
+ }> | null;
582
+ readonly adapterConfig: any;
583
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
584
+ readonly parentDisplay: any;
585
+ readonly effectiveRpcDriverName: any;
586
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
587
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
588
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
589
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
590
+ }, {
591
+ rendererTypeName: string;
592
+ error: unknown;
593
+ statusMessage: string | undefined;
594
+ } & {
595
+ readonly RenderingComponent: React.FC<{
596
+ model: {
597
+ id: string;
598
+ type: string;
599
+ rpcDriverName: string | undefined;
600
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
601
+ rendererTypeName: string;
602
+ error: unknown;
603
+ statusMessage: string | undefined;
604
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
605
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
606
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
607
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
608
+ }, {
609
+ rendererTypeName: string;
610
+ error: unknown;
611
+ statusMessage: string | undefined;
612
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
613
+ onHorizontalScroll?: () => void;
614
+ blockState?: Record<string, any>;
615
+ }>;
616
+ readonly DisplayBlurb: React.FC<{
617
+ model: {
618
+ id: string;
619
+ type: string;
620
+ rpcDriverName: string | undefined;
621
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
622
+ rendererTypeName: string;
623
+ error: unknown;
624
+ statusMessage: string | undefined;
625
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
626
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
627
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
628
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
629
+ }, {
630
+ rendererTypeName: string;
631
+ error: unknown;
632
+ statusMessage: string | undefined;
633
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
634
+ }> | null;
635
+ readonly adapterConfig: any;
636
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
637
+ readonly parentDisplay: any;
638
+ readonly effectiveRpcDriverName: any;
639
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
640
+ };
641
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
642
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
643
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
644
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
645
+ regionCannotBeRendered(): null;
646
+ } & {
647
+ setStatusMessage(arg?: string): void;
648
+ setError(error?: unknown): void;
649
+ setRpcDriverName(rpcDriverName: string): void;
650
+ reload(): void;
651
+ } & {
652
+ scrollTop: number;
653
+ } & {
654
+ readonly height: number;
655
+ } & {
656
+ setScrollTop(scrollTop: number): void;
657
+ setHeight(displayHeight: number): number;
658
+ resizeHeight(distance: number): number;
659
+ } & {
660
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
661
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
662
+ currStatsBpPerPx: number;
663
+ } & {
664
+ readonly currentBytesRequested: number;
665
+ readonly currentFeatureScreenDensity: number;
666
+ readonly maxFeatureScreenDensity: any;
667
+ readonly featureDensityStatsReady: boolean;
668
+ readonly maxAllowableBytes: number;
669
+ } & {
670
+ afterAttach(): void;
671
+ } & {
672
+ setCurrStatsBpPerPx(n: number): void;
673
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
674
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
675
+ setFeatureDensityStatsP(arg: any): void;
676
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
677
+ clearFeatureDensityStats(): void;
678
+ } & {
679
+ readonly regionTooLarge: boolean;
680
+ readonly regionTooLargeReason: string;
681
+ } & {
682
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
683
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
684
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
685
+ } & {
686
+ mouseoverExtraInformation: string | undefined;
687
+ featureIdUnderMouse: undefined | string;
688
+ subfeatureIdUnderMouse: undefined | string;
689
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
690
+ } & {
691
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
692
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
693
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
694
+ } & {
695
+ readonly renderDelay: number;
696
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
697
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
698
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
699
+ readonly selectedFeatureId: string | undefined;
700
+ readonly featureWidgetType: {
701
+ type: string;
702
+ id: string;
703
+ };
704
+ } & {
705
+ readonly showTooltipsEnabled: boolean;
706
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
707
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
708
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
709
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
710
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
711
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
712
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
713
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
714
+ } & {
715
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
716
+ deleteBlock(key: string): void;
717
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
718
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
719
+ clearFeatureSelection(): void;
720
+ setFeatureIdUnderMouse(feature?: string): void;
721
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
722
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
723
+ setMouseoverExtraInformation(extra?: string): void;
724
+ setShowLegend(s: boolean): void;
725
+ setShowTooltips(arg: boolean): void;
726
+ } & {
727
+ reload(): Promise<void>;
728
+ } & {
729
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
730
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
731
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
732
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
733
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
734
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
735
+ } & {
736
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
737
+ } & {
738
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
739
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
740
+ } & {
741
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
742
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
743
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
744
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
745
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
746
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
747
+ }, {
748
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
749
+ filled: boolean;
750
+ reactElement: React.ReactElement | undefined;
751
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
752
+ layout: any;
753
+ blockStatusMessage: string;
754
+ error: unknown;
755
+ message: string | undefined;
756
+ maxHeightReached: boolean;
757
+ ReactComponent: ({ model, }: {
758
+ model: {
759
+ error?: unknown;
760
+ reload: () => void;
761
+ message?: React.ReactNode;
762
+ statusMessage?: string;
763
+ reactElement?: React.ReactElement;
764
+ isRenderingPending?: boolean;
765
+ };
766
+ }) => import("react/jsx-runtime").JSX.Element;
767
+ renderProps: any;
768
+ renderArgs: Record<string, unknown> | undefined;
769
+ isRenderingPending: boolean;
770
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
771
+ } & {
772
+ doReload(): void;
773
+ setStatusMessage(message: string): void;
774
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
775
+ setMessage(messageText: string): void;
776
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
777
+ setError(error: unknown): void;
778
+ reload(): void;
779
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
780
+ beforeDestroy(): void;
781
+ } & {
782
+ readonly statusMessage: any;
783
+ } & {
784
+ afterAttach(): void;
785
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
786
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
787
+ maxFeatureScreenDensity: {
788
+ type: string;
789
+ description: string;
790
+ defaultValue: number;
791
+ };
792
+ fetchSizeLimit: {
793
+ type: string;
794
+ defaultValue: number;
795
+ description: string;
796
+ };
797
+ height: {
798
+ type: string;
799
+ defaultValue: number;
800
+ description: string;
801
+ };
802
+ mouseover: {
803
+ type: string;
804
+ description: string;
805
+ defaultValue: string;
806
+ contextVariable: string[];
807
+ };
808
+ jexlFilters: {
809
+ type: string;
810
+ description: string;
811
+ defaultValue: never[];
812
+ };
813
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
814
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
815
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
816
+ }, {
817
+ rendererTypeName: string;
818
+ error: unknown;
819
+ statusMessage: string | undefined;
820
+ } & {
821
+ readonly RenderingComponent: React.FC<{
822
+ model: {
823
+ id: string;
824
+ type: string;
825
+ rpcDriverName: string | undefined;
826
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
827
+ rendererTypeName: string;
828
+ error: unknown;
829
+ statusMessage: string | undefined;
830
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
831
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
832
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
833
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
834
+ }, {
835
+ rendererTypeName: string;
836
+ error: unknown;
837
+ statusMessage: string | undefined;
838
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
839
+ onHorizontalScroll?: () => void;
840
+ blockState?: Record<string, any>;
841
+ }>;
842
+ readonly DisplayBlurb: React.FC<{
843
+ model: {
844
+ id: string;
845
+ type: string;
846
+ rpcDriverName: string | undefined;
847
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
848
+ rendererTypeName: string;
849
+ error: unknown;
850
+ statusMessage: string | undefined;
851
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
852
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
853
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
854
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
855
+ }, {
856
+ rendererTypeName: string;
857
+ error: unknown;
858
+ statusMessage: string | undefined;
859
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
860
+ }> | null;
861
+ readonly adapterConfig: any;
862
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
863
+ readonly parentDisplay: any;
864
+ readonly effectiveRpcDriverName: any;
865
+ } & {
866
+ renderProps(): any;
867
+ renderingProps(): {
868
+ displayModel: {
869
+ id: string;
870
+ type: string;
871
+ rpcDriverName: string | undefined;
872
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
873
+ rendererTypeName: string;
874
+ error: unknown;
875
+ statusMessage: string | undefined;
876
+ } & {
877
+ readonly RenderingComponent: React.FC<{
878
+ model: {
879
+ id: string;
880
+ type: string;
881
+ rpcDriverName: string | undefined;
882
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
883
+ rendererTypeName: string;
884
+ error: unknown;
885
+ statusMessage: string | undefined;
886
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
887
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
888
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
889
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
890
+ }, {
891
+ rendererTypeName: string;
892
+ error: unknown;
893
+ statusMessage: string | undefined;
894
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
895
+ onHorizontalScroll?: () => void;
896
+ blockState?: Record<string, any>;
897
+ }>;
898
+ readonly DisplayBlurb: React.FC<{
899
+ model: {
900
+ id: string;
901
+ type: string;
902
+ rpcDriverName: string | undefined;
903
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
904
+ rendererTypeName: string;
905
+ error: unknown;
906
+ statusMessage: string | undefined;
907
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
908
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
909
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
910
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
911
+ }, {
912
+ rendererTypeName: string;
913
+ error: unknown;
914
+ statusMessage: string | undefined;
915
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
916
+ }> | null;
917
+ readonly adapterConfig: any;
918
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
919
+ readonly parentDisplay: any;
920
+ readonly effectiveRpcDriverName: any;
921
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
922
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
923
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
924
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
925
+ }, {
926
+ rendererTypeName: string;
927
+ error: unknown;
928
+ statusMessage: string | undefined;
929
+ } & {
930
+ readonly RenderingComponent: React.FC<{
931
+ model: {
932
+ id: string;
933
+ type: string;
934
+ rpcDriverName: string | undefined;
935
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
936
+ rendererTypeName: string;
937
+ error: unknown;
938
+ statusMessage: string | undefined;
939
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
940
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
941
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
942
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
943
+ }, {
944
+ rendererTypeName: string;
945
+ error: unknown;
946
+ statusMessage: string | undefined;
947
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
948
+ onHorizontalScroll?: () => void;
949
+ blockState?: Record<string, any>;
950
+ }>;
951
+ readonly DisplayBlurb: React.FC<{
952
+ model: {
953
+ id: string;
954
+ type: string;
955
+ rpcDriverName: string | undefined;
956
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
957
+ rendererTypeName: string;
958
+ error: unknown;
959
+ statusMessage: string | undefined;
960
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
961
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
962
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
963
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
964
+ }, {
965
+ rendererTypeName: string;
966
+ error: unknown;
967
+ statusMessage: string | undefined;
968
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
969
+ }> | null;
970
+ readonly adapterConfig: any;
971
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
972
+ readonly parentDisplay: any;
973
+ readonly effectiveRpcDriverName: any;
974
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
975
+ };
976
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
977
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
978
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
979
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
980
+ regionCannotBeRendered(): null;
981
+ } & {
982
+ setStatusMessage(arg?: string): void;
983
+ setError(error?: unknown): void;
984
+ setRpcDriverName(rpcDriverName: string): void;
985
+ reload(): void;
986
+ } & {
987
+ scrollTop: number;
988
+ } & {
989
+ readonly height: number;
990
+ } & {
991
+ setScrollTop(scrollTop: number): void;
992
+ setHeight(displayHeight: number): number;
993
+ resizeHeight(distance: number): number;
994
+ } & {
995
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
996
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
997
+ currStatsBpPerPx: number;
998
+ } & {
999
+ readonly currentBytesRequested: number;
1000
+ readonly currentFeatureScreenDensity: number;
1001
+ readonly maxFeatureScreenDensity: any;
1002
+ readonly featureDensityStatsReady: boolean;
1003
+ readonly maxAllowableBytes: number;
1004
+ } & {
1005
+ afterAttach(): void;
1006
+ } & {
1007
+ setCurrStatsBpPerPx(n: number): void;
1008
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1009
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1010
+ setFeatureDensityStatsP(arg: any): void;
1011
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1012
+ clearFeatureDensityStats(): void;
1013
+ } & {
1014
+ readonly regionTooLarge: boolean;
1015
+ readonly regionTooLargeReason: string;
1016
+ } & {
1017
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
1018
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
1019
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
1020
+ } & {
1021
+ mouseoverExtraInformation: string | undefined;
1022
+ featureIdUnderMouse: undefined | string;
1023
+ subfeatureIdUnderMouse: undefined | string;
1024
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
1025
+ } & {
1026
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1027
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
1028
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
1029
+ } & {
1030
+ readonly renderDelay: number;
1031
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
1032
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
1033
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
1034
+ readonly selectedFeatureId: string | undefined;
1035
+ readonly featureWidgetType: {
1036
+ type: string;
1037
+ id: string;
1038
+ };
1039
+ } & {
1040
+ readonly showTooltipsEnabled: boolean;
1041
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
1042
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
1043
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
1044
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord>;
1045
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
1046
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
1047
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types").LayoutRecord | undefined;
1048
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util").FeatureLabelData>;
1049
+ } & {
1050
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
1051
+ deleteBlock(key: string): void;
1052
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
1053
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
1054
+ clearFeatureSelection(): void;
1055
+ setFeatureIdUnderMouse(feature?: string): void;
1056
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
1057
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
1058
+ setMouseoverExtraInformation(extra?: string): void;
1059
+ setShowLegend(s: boolean): void;
1060
+ setShowTooltips(arg: boolean): void;
1061
+ } & {
1062
+ reload(): Promise<void>;
1063
+ } & {
1064
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1065
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1066
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1067
+ onMouseMove(_: unknown, featureId?: string): void;
1068
+ onMouseLeave(_: unknown): void;
1069
+ onContextMenu(_: unknown): void;
1070
+ };
220
1071
  renderProps(): any;
221
1072
  } & {
222
1073
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
@@ -229,16 +1080,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
229
1080
  readonly displayModeSetting: any;
230
1081
  } & {
231
1082
  readonly rendererConfig: {
232
- [x: string]: any;
233
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
234
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
235
- [x: string]: any;
236
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
237
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
238
- [x: string]: any;
239
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
240
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
241
- } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
1083
+ displayMode: any;
1084
+ };
242
1085
  } & {
243
1086
  renderProps(): any;
244
1087
  } & {
@@ -255,29 +1098,29 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
255
1098
  })[];
256
1099
  }, {
257
1100
  type: string;
258
- } & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
259
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
260
- type: import("mobx-state-tree").ISimpleType<string>;
261
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
262
- } & {
263
- heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
264
- } & {
265
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
266
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
267
- } & {
268
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
269
- key: import("mobx-state-tree").ISimpleType<string>;
270
- region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
271
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
272
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
273
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1101
+ } & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
1102
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1103
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1104
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1105
+ } & {
1106
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1107
+ } & {
1108
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1109
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
1110
+ } & {
1111
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
1112
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1113
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1114
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1115
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1116
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
274
1117
  }, {
275
- stopToken: string | undefined;
1118
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
276
1119
  filled: boolean;
277
1120
  reactElement: React.ReactElement | undefined;
278
1121
  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
279
1122
  layout: any;
280
- status: string;
1123
+ blockStatusMessage: string;
281
1124
  error: unknown;
282
1125
  message: string | undefined;
283
1126
  maxHeightReached: boolean;
@@ -285,25 +1128,32 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
285
1128
  model: {
286
1129
  error?: unknown;
287
1130
  reload: () => void;
288
- message: React.ReactNode;
289
- filled?: boolean;
290
- status?: string;
1131
+ message?: React.ReactNode;
1132
+ statusMessage?: string;
291
1133
  reactElement?: React.ReactElement;
1134
+ isRenderingPending?: boolean;
292
1135
  };
293
- }) => import("react/jsx-runtime").JSX.Element | undefined;
1136
+ }) => import("react/jsx-runtime").JSX.Element;
294
1137
  renderProps: any;
1138
+ renderArgs: Record<string, unknown> | undefined;
1139
+ isRenderingPending: boolean;
1140
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
295
1141
  } & {
296
1142
  doReload(): void;
297
- afterAttach(): void;
298
- setStatus(message: string): void;
299
- setLoading(newStopToken: string): void;
1143
+ setStatusMessage(message: string): void;
1144
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
300
1145
  setMessage(messageText: string): void;
301
1146
  setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
302
1147
  setError(error: unknown): void;
303
1148
  reload(): void;
1149
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
304
1150
  beforeDestroy(): void;
305
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
306
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1151
+ } & {
1152
+ readonly statusMessage: any;
1153
+ } & {
1154
+ afterAttach(): void;
1155
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1156
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
307
1157
  maxFeatureScreenDensity: {
308
1158
  type: string;
309
1159
  description: string;
@@ -330,13 +1180,17 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
330
1180
  description: string;
331
1181
  defaultValue: never[];
332
1182
  };
333
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
334
- }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
1183
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
1184
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1185
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1186
+ }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & import("@jbrowse/mobx-state-tree")._NotCustomized, {
335
1187
  type: string;
336
1188
  id: string;
337
- configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
1189
+ configuration: import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>;
338
1190
  rpcDriverName: string | undefined;
339
1191
  heightPreConfig: number | undefined;
340
1192
  userBpPerPxLimit: number | undefined;
341
1193
  userByteSizeLimit: number | undefined;
342
- } & import("mobx-state-tree")._NotCustomized>;
1194
+ showLegend: boolean | undefined;
1195
+ showTooltips: boolean | undefined;
1196
+ } & import("@jbrowse/mobx-state-tree")._NotCustomized>;