@jbrowse/plugin-arc 2.17.0 → 3.0.0

package/dist/LinearArcDisplay/model.js

@@ -2,63 +2,34 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.stateModelFactory = stateModelFactory;
 const configuration_1 = require("@jbrowse/core/configuration");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
 const util_1 = require("@jbrowse/core/util");
-/**
- * #stateModel LinearArcDisplay
- * extends
- * - [BaseLinearDisplay](../baselineardisplay)
- */
+const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
+const mobx_state_tree_1 = require("mobx-state-tree");
 function stateModelFactory(configSchema) {
     return mobx_state_tree_1.types
         .compose('LinearArcDisplay', plugin_linear_genome_view_1.BaseLinearDisplay, mobx_state_tree_1.types.model({
-        /**
-         * #property
-         */
         type: mobx_state_tree_1.types.literal('LinearArcDisplay'),
-        /**
-         * #property
-         */
         configuration: (0, configuration_1.ConfigurationReference)(configSchema),
-        /**
-         * #property
-         */
         displayMode: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get blockType() {
             return 'staticBlocks';
         },
-        /**
-         * #getter
-         */
         get renderDelay() {
             return 500;
         },
-        /**
-         * #getter
-         */
         get rendererTypeName() {
             return self.configuration.renderer.type;
         },
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get displayModeSetting() {
             var _a;
             return (_a = self.displayMode) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, ['renderer', 'displayMode']);
         },
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get rendererConfig() {
             const configBlob = (0, configuration_1.getConf)(self, ['renderer']) || {};
             const config = configBlob;
@@ -71,9 +42,6 @@ function stateModelFactory(configSchema) {
         .views(self => {
         const { renderProps: superRenderProps } = self;
         return {
-            /**
-             * #method
-             */
             renderProps() {
                 return {
                     ...superRenderProps(),
@@ -85,9 +53,6 @@ function stateModelFactory(configSchema) {
         };
     })
         .actions(self => ({
-        /**
-         * #action
-         */
         setDisplayMode(flag) {
             self.displayMode = flag;
         },
@@ -95,9 +60,6 @@ function stateModelFactory(configSchema) {
         .views(self => {
         const superMenuItems = self.trackMenuItems;
         return {
-            /**
-             * #method
-             */
             trackMenuItems() {
                 return [
                     ...superMenuItems(),

package/dist/LinearPairedArcDisplay/afterAttach.d.ts

@@ -1,2 +1,2 @@
-import { IAnyStateTreeNode } from 'mobx-state-tree';
+import type { IAnyStateTreeNode } from 'mobx-state-tree';
 export declare function doAfterAttach<T extends IAnyStateTreeNode>(self: T): void;

package/dist/LinearPairedArcDisplay/afterAttach.js

@@ -1,8 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.doAfterAttach = doAfterAttach;
-const util_1 = require("./util");
 const fetchChains_1 = require("./fetchChains");
+const util_1 = require("./util");
 function doAfterAttach(self) {
     (0, util_1.createAutorun)(self, async () => {
         await (0, fetchChains_1.fetchChains)(self);

package/dist/LinearPairedArcDisplay/components/Arcs.d.ts

@@ -1,7 +1,6 @@
-import React from 'react';
-import { LinearArcDisplayModel } from '../model';
+import type { LinearArcDisplayModel } from '../model';
 declare const Arcs: ({ model, exportSVG, }: {
     model: LinearArcDisplayModel;
     exportSVG?: boolean;
-}) => React.JSX.Element | null;
+}) => import("react/jsx-runtime").JSX.Element | null;
 export default Arcs;

package/dist/LinearPairedArcDisplay/components/Arcs.js

@@ -15,18 +15,29 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
-const mobx_react_1 = require("mobx-react");
-const util_1 = require("@jbrowse/core/util");
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const configuration_1 = require("@jbrowse/core/configuration");
+const util_1 = require("@jbrowse/core/util");
+const mobx_react_1 = require("mobx-react");
 const util_2 = require("./util");
 const ArcTooltip = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../../ArcTooltip'))));
 const Arc = (0, mobx_react_1.observer)(function ({ model, feature, alt, assembly, view, }) {
@@ -52,30 +63,25 @@ const Arc = (0, mobx_react_1.observer)(function ({ model, feature, alt, assembly
         const right = p2;
         const col = mouseOvered ? 'black' : c;
         const sw = 3;
-        return absrad > 1 ? (react_1.default.createElement(react_1.default.Fragment, null,
-            react_1.default.createElement("path", { d: `M ${left} 0 C ${left} ${destY}, ${right} ${destY}, ${right} 0`, ref: ref, ...(0, util_1.getStrokeProps)(col), strokeWidth: sw, onMouseOut: () => {
-                    setMouseOvered(false);
-                }, onMouseOver: () => {
-                    setMouseOvered(true);
-                }, onClick: () => {
-                    model.selectFeature(feature);
-                }, fill: "none", pointerEvents: "stroke" }),
-            k1.mateDirection ? (react_1.default.createElement("line", { ...(0, util_1.getStrokeProps)(col), strokeWidth: sw, onMouseOut: () => {
-                    setMouseOvered(false);
-                }, onMouseOver: () => {
-                    setMouseOvered(true);
-                }, onClick: () => {
-                    model.selectFeature(feature);
-                }, x1: left, x2: left + k1.mateDirection * 20, y1: 1.5, y2: 1.5 })) : null,
-            k2.mateDirection ? (react_1.default.createElement("line", { ...(0, util_1.getStrokeProps)(col), strokeWidth: sw, onMouseOut: () => {
-                    setMouseOvered(false);
-                }, onMouseOver: () => {
-                    setMouseOvered(true);
-                }, onClick: () => {
-                    model.selectFeature(feature);
-                }, x1: right, x2: right + k2.mateDirection * 20, y1: 1.5, y2: 1.5 })) : null,
-            mouseOvered ? (react_1.default.createElement(react_1.Suspense, { fallback: null },
-                react_1.default.createElement(ArcTooltip, { contents: (0, util_2.makeSummary)(feature, alt) }))) : null)) : null;
+        return absrad > 1 ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("path", { d: `M ${left} 0 C ${left} ${destY}, ${right} ${destY}, ${right} 0`, ref: ref, ...(0, util_1.getStrokeProps)(col), strokeWidth: sw, onMouseOut: () => {
+                        setMouseOvered(false);
+                    }, onMouseOver: () => {
+                        setMouseOvered(true);
+                    }, onClick: () => {
+                        model.selectFeature(feature);
+                    }, fill: "none", pointerEvents: "stroke" }), k1.mateDirection ? ((0, jsx_runtime_1.jsx)("line", { ...(0, util_1.getStrokeProps)(col), strokeWidth: sw, onMouseOut: () => {
+                        setMouseOvered(false);
+                    }, onMouseOver: () => {
+                        setMouseOvered(true);
+                    }, onClick: () => {
+                        model.selectFeature(feature);
+                    }, x1: left, x2: left + k1.mateDirection * 20, y1: 1.5, y2: 1.5 })) : null, k2.mateDirection ? ((0, jsx_runtime_1.jsx)("line", { ...(0, util_1.getStrokeProps)(col), strokeWidth: sw, onMouseOut: () => {
+                        setMouseOvered(false);
+                    }, onMouseOver: () => {
+                        setMouseOvered(true);
+                    }, onClick: () => {
+                        model.selectFeature(feature);
+                    }, x1: right, x2: right + k2.mateDirection * 20, y1: 1.5, y2: 1.5 })) : null, mouseOvered ? ((0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(ArcTooltip, { contents: (0, util_2.makeSummary)(feature, alt) }) })) : null] })) : null;
     }
     return null;
 });
@@ -83,7 +89,7 @@ const Wrapper = (0, mobx_react_1.observer)(function ({ model, exportSVG, childre
     const { height } = model;
     const view = (0, util_1.getContainingView)(model);
     const width = Math.round(view.dynamicBlocks.totalWidthPx);
-    return exportSVG ? (children) : (react_1.default.createElement("svg", { width: width, height: height }, children));
+    return exportSVG ? (children) : ((0, jsx_runtime_1.jsx)("svg", { width: width, height: height, children: children }));
 });
 const Arcs = (0, mobx_react_1.observer)(function ({ model, exportSVG, }) {
     const view = (0, util_1.getContainingView)(model);
@@ -91,10 +97,10 @@ const Arcs = (0, mobx_react_1.observer)(function ({ model, exportSVG, }) {
     const { assemblyManager } = session;
     const { features } = model;
     const assembly = assemblyManager.get(view.assemblyNames[0]);
-    return assembly ? (react_1.default.createElement(Wrapper, { model: model, exportSVG: exportSVG }, features === null || features === void 0 ? void 0 : features.map(f => {
-        var _a;
-        const alts = f.get('ALT');
-        return ((_a = alts === null || alts === void 0 ? void 0 : alts.map(a => (react_1.default.createElement(Arc, { key: `${f.id()}-${a}`, session: session, feature: f, alt: a, view: view, model: model, assembly: assembly })))) !== null && _a !== void 0 ? _a : (react_1.default.createElement(Arc, { key: f.id(), session: session, feature: f, view: view, model: model, assembly: assembly })));
-    }))) : null;
+    return assembly ? ((0, jsx_runtime_1.jsx)(Wrapper, { model: model, exportSVG: exportSVG, children: features === null || features === void 0 ? void 0 : features.map(f => {
+            var _a;
+            const alts = f.get('ALT');
+            return ((_a = alts === null || alts === void 0 ? void 0 : alts.map(a => ((0, jsx_runtime_1.jsx)(Arc, { session: session, feature: f, alt: a, view: view, model: model, assembly: assembly }, `${f.id()}-${a}`)))) !== null && _a !== void 0 ? _a : ((0, jsx_runtime_1.jsx)(Arc, { session: session, feature: f, view: view, model: model, assembly: assembly }, f.id())));
+        }) })) : null;
 });
 exports.default = Arcs;

package/dist/LinearPairedArcDisplay/components/BaseDisplayComponent.d.ts

@@ -1,7 +1,6 @@
-import React from 'react';
-import { LinearArcDisplayModel } from '../model';
+import type { LinearArcDisplayModel } from '../model';
 declare const BaseDisplayComponent: ({ model, children, }: {
     model: LinearArcDisplayModel;
     children?: React.ReactNode;
-}) => React.JSX.Element | null;
+}) => import("react/jsx-runtime").JSX.Element | null;
 export default BaseDisplayComponent;

package/dist/LinearPairedArcDisplay/components/BaseDisplayComponent.js

@@ -15,27 +15,37 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
-const material_1 = require("@mui/material");
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const ui_1 = require("@jbrowse/core/ui");
+const util_1 = require("@jbrowse/core/util");
 const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const mui_1 = require("tss-react/mui");
-const mobx_react_1 = require("mobx-react");
-// icons
 const Refresh_1 = __importDefault(require("@mui/icons-material/Refresh"));
 const Report_1 = __importDefault(require("@mui/icons-material/Report"));
-const util_1 = require("@jbrowse/core/util");
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
+const mui_1 = require("tss-react/mui");
 const ErrorMessageStackTraceDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('@jbrowse/core/ui/ErrorMessageStackTraceDialog'))));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     loading: {
@@ -52,31 +62,22 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
 }));
 const BaseDisplayComponent = (0, mobx_react_1.observer)(function ({ model, children, }) {
     const { error, regionTooLarge } = model;
-    return error ? (react_1.default.createElement(plugin_linear_genome_view_1.BlockMsg, { message: `${error}`, severity: "error", action: react_1.default.createElement(react_1.default.Fragment, null,
-            react_1.default.createElement(material_1.Tooltip, { title: "Reload" },
-                react_1.default.createElement(material_1.IconButton, { "data-testid": "reload_button", onClick: () => {
-                        model.reload();
-                    } },
-                    react_1.default.createElement(Refresh_1.default, null))),
-            react_1.default.createElement(material_1.Tooltip, { title: "Show stack trace" },
-                react_1.default.createElement(material_1.IconButton, { onClick: () => {
-                        (0, util_1.getSession)(model).queueDialog(onClose => [
-                            ErrorMessageStackTraceDialog,
-                            { onClose, error: model.error },
-                        ]);
-                    } },
-                    react_1.default.createElement(Report_1.default, null)))) })) : regionTooLarge ? (model.regionCannotBeRendered()) : (react_1.default.createElement(DataDisplay, { model: model }, children));
+    return error ? ((0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.BlockMsg, { message: `${error}`, severity: "error", action: (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Reload", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { "data-testid": "reload_button", onClick: () => {
+                            model.reload();
+                        }, children: (0, jsx_runtime_1.jsx)(Refresh_1.default, {}) }) }), (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Show stack trace", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
+                            (0, util_1.getSession)(model).queueDialog(onClose => [
+                                ErrorMessageStackTraceDialog,
+                                { onClose, error: model.error },
+                            ]);
+                        }, children: (0, jsx_runtime_1.jsx)(Report_1.default, {}) }) })] }) })) : regionTooLarge ? (model.regionCannotBeRendered()) : ((0, jsx_runtime_1.jsx)(DataDisplay, { model: model, children: children }));
 });
 const DataDisplay = (0, mobx_react_1.observer)(function ({ model, children, }) {
     const { loading } = model;
-    return (react_1.default.createElement("div", null,
-        children,
-        loading ? react_1.default.createElement(LoadingBar, { model: model }) : null));
+    return ((0, jsx_runtime_1.jsxs)("div", { children: [children, loading ? (0, jsx_runtime_1.jsx)(LoadingBar, { model: model }) : null] }));
 });
 const LoadingBar = (0, mobx_react_1.observer)(function ({ model, }) {
     const { classes } = useStyles();
     const { message } = model;
-    return (react_1.default.createElement("div", { className: classes.loading },
-        react_1.default.createElement(ui_1.LoadingEllipses, { message: message })));
+    return ((0, jsx_runtime_1.jsx)("div", { className: classes.loading, children: (0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, { message: message }) }));
 });
 exports.default = BaseDisplayComponent;

package/dist/LinearPairedArcDisplay/components/ReactComponent.d.ts

@@ -1,7 +1,6 @@
-import React from 'react';
-import { LinearArcDisplayModel } from '../model';
+import type { LinearArcDisplayModel } from '../model';
 declare const LinearArcReactComponent: ({ model, exportSVG, }: {
     model: LinearArcDisplayModel;
     exportSVG?: boolean;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default LinearArcReactComponent;

package/dist/LinearPairedArcDisplay/components/ReactComponent.js

@@ -3,12 +3,11 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
 const mobx_react_1 = require("mobx-react");
-const BaseDisplayComponent_1 = __importDefault(require("./BaseDisplayComponent"));
 const Arcs_1 = __importDefault(require("./Arcs"));
+const BaseDisplayComponent_1 = __importDefault(require("./BaseDisplayComponent"));
 const LinearArcReactComponent = (0, mobx_react_1.observer)(function ({ model, exportSVG, }) {
-    return (react_1.default.createElement(BaseDisplayComponent_1.default, { model: model },
-        react_1.default.createElement(Arcs_1.default, { model: model, exportSVG: exportSVG })));
+    return ((0, jsx_runtime_1.jsx)(BaseDisplayComponent_1.default, { model: model, children: (0, jsx_runtime_1.jsx)(Arcs_1.default, { model: model, exportSVG: exportSVG }) }));
 });
 exports.default = LinearArcReactComponent;

package/dist/LinearPairedArcDisplay/components/util.d.ts

@@ -1,4 +1,4 @@
-import { Feature } from '@jbrowse/core/util';
+import type { Feature } from '@jbrowse/core/util';
 export declare function makeFeaturePair(feature: Feature, alt?: string): {
     k1: {
         refName: string;

package/dist/LinearPairedArcDisplay/components/util.js

@@ -17,19 +17,13 @@ function makeFeaturePair(feature, alt) {
     let mateStart = 0;
     let joinDirection = 0;
     let mateDirection = 0;
-    // one sided bracket used, because there could be <INS:ME> and we just check
-    // startswith below
     const symbolicAlleles = ['<TRA', '<DEL', '<INV', '<INS', '<DUP', '<CNV'];
     if (symbolicAlleles.some(a => alt === null || alt === void 0 ? void 0 : alt.startsWith(a))) {
-        // END is defined to be a single value, not an array. CHR2 not defined in
-        // VCF spec, but should be similar
         const info = feature.get('INFO');
         const e = (_b = (_a = info === null || info === void 0 ? void 0 : info.END) === null || _a === void 0 ? void 0 : _a[0]) !== null && _b !== void 0 ? _b : end;
         mateRefName = (_d = (_c = info === null || info === void 0 ? void 0 : info.CHR2) === null || _c === void 0 ? void 0 : _c[0]) !== null && _d !== void 0 ? _d : refName;
         mateEnd = e;
         mateStart = e - 1;
-        // re-adjust the arc to be from start to end of feature by re-assigning end
-        // to the 'mate'
         end = start + 1;
     }
     else if (bnd === null || bnd === void 0 ? void 0 : bnd.MatePosition) {
@@ -68,5 +62,5 @@ function makeSummary(feature, alt) {
         alt,
     ]
         .filter(f => !!f)
-        .join(' - ');
+        .join('<br/>');
 }

package/dist/LinearPairedArcDisplay/configSchema.d.ts

@@ -1,10 +1,4 @@
-/**
- * #config LinearPairedArcDisplay
- */
 export declare function configSchemaFactory(): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    /**
-     * #slot
-     */
     color: {
         type: string;
         description: string;

package/dist/LinearPairedArcDisplay/configSchema.js

@@ -3,14 +3,8 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.configSchemaFactory = configSchemaFactory;
 const configuration_1 = require("@jbrowse/core/configuration");
 const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-/**
- * #config LinearPairedArcDisplay
- */
 function configSchemaFactory() {
     return (0, configuration_1.ConfigurationSchema)('LinearPairedArcDisplay', {
-        /**
-         * #slot
-         */
         color: {
             type: 'color',
             description: 'the color of the arcs',
@@ -18,9 +12,6 @@ function configSchemaFactory() {
             contextVariable: ['feature', 'alt'],
         },
     }, {
-        /**
-         * #baseConfiguration
-         */
         baseConfiguration: plugin_linear_genome_view_1.baseLinearDisplayConfigSchema,
         explicitlyTyped: true,
     });

package/dist/LinearPairedArcDisplay/fetchChains.d.ts

@@ -1,4 +1,4 @@
-import { LinearArcDisplayModel } from './model';
+import type { LinearArcDisplayModel } from './model';
 export interface ReducedFeature {
     name: string;
     strand: number;

package/dist/LinearPairedArcDisplay/fetchChains.js

@@ -3,11 +3,10 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.fetchChains = fetchChains;
 const util_1 = require("@jbrowse/core/util");
 async function fetchChains(self) {
-    // @ts-expect-error
     const { rpcSessionId: sessionId } = (0, util_1.getContainingTrack)(self);
     const { rpcManager } = (0, util_1.getSession)(self);
     const view = (0, util_1.getContainingView)(self);
-    if (!view.initialized || self.error || self.regionTooLarge) {
+    if (!view.initialized || self.error || !self.statsReadyAndRegionNotTooLarge) {
         return;
     }
     self.setLoading(true);

package/dist/LinearPairedArcDisplay/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function LinearPairedArcDisplayF(pluginManager: PluginManager): void;

package/dist/LinearPairedArcDisplay/index.js

@@ -15,19 +15,29 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.default = LinearPairedArcDisplayF;
+const react_1 = require("react");
 const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
 const configSchema_1 = require("./configSchema");
 const model_1 = require("./model");
-const react_1 = require("react");
 function LinearPairedArcDisplayF(pluginManager) {
     pluginManager.addDisplayType(() => {
         const configSchema = (0, configSchema_1.configSchemaFactory)();

package/dist/LinearPairedArcDisplay/model.d.ts

@@ -1,17 +1,7 @@
-import React from 'react';
-import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
-import { Instance } from 'mobx-state-tree';
-import { Feature } from '@jbrowse/core/util';
-/**
- * #stateModel LinearPairedArcDisplay
- * this is a non-block-based track type, and can connect arcs across multiple
- * displayedRegions
- *
- * extends
- * - [BaseDisplay](../basedisplay)
- * - [TrackHeightMixin](../trackheightmixin)
- * - [FeatureDensityMixin](../featuredensitymixin)
- */
+import type React from 'react';
+import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import type { Feature } from '@jbrowse/core/util';
+import type { Instance } from 'mobx-state-tree';
 export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
@@ -22,17 +12,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
 } & {
-    /**
-     * #property
-     */
     type: import("mobx-state-tree").ISimpleType<"LinearPairedArcDisplay">;
-    /**
-     * #property
-     */
     configuration: AnyConfigurationSchemaType;
-    /**
-     * #property
-     */
     displayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 }, {
     rendererTypeName: string;
@@ -49,22 +30,14 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             error: unknown;
             message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree" /**
-             * #property
-             */).ISimpleType<string>, [undefined]>;
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import(
-            /**
-             * #getter
-             */
-            "mobx-state-tree").ISimpleType<string>>;
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
             error: unknown;
             message: string | undefined;
-        }, import("mobx-state-tree" /**
-         * #action
-         */)._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
         onHorizontalScroll?: () => void;
         blockState?: Record<string, any>;
     }>;
@@ -131,40 +104,23 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;
 } & {
+    readonly statsReadyAndRegionNotTooLarge: boolean;
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): React.JSX.Element | null;
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
 } & {
     lastDrawnOffsetPx: number;
     features: Feature[] | undefined;
     loading: boolean;
     drawn: boolean;
 } & {
-    /**
-     * #getter
-     */
     readonly displayModeSetting: any;
 } & {
-    /**
-     * #action
-     */
     selectFeature(feature: Feature): void;
-    /**
-     * #action
-     */
     setLoading(flag: boolean): void;
-    /**
-     * #action
-     */
     setFeatures(f: Feature[]): void;
-    /**
-     * #action
-     */
     setDisplayMode(flag: string): void;
 } & {
     afterAttach(): void;
-    /**
-     * #action
-     */
     renderSvg(opts: {
         rasterizeLayers?: boolean;
     }): Promise<React.ReactNode>;