@jbrowse/plugin-arc 2.16.1 → 2.18.0

package/esm/LinearArcDisplay/model.d.ts

@@ -1,9 +1,4 @@
-import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
-/**
- * #stateModel LinearArcDisplay
- * extends
- * - [BaseLinearDisplay](../baselineardisplay)
- */
+import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
@@ -16,21 +11,12 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
 } & {
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
         reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined;
+        stopToken: string | undefined;
         filled: boolean;
         reactElement: React.ReactElement | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
@@ -54,15 +40,9 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         doReload(): void;
         afterAttach(): void;
         setStatus(message: string): void;
-        setLoading(abortController: AbortController): void;
+        setLoading(newStopToken: string): void;
         setMessage(messageText: string): void;
-        setRendered(props: {
-            reactElement: React.ReactElement;
-            features: Map<string, import("@jbrowse/core/util").Feature>;
-            layout: any;
-            maxHeightReached: boolean;
-            renderProps: any;
-        } | undefined): void;
+        setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
         setError(error: unknown): void;
         reload(): void;
         beforeDestroy(): void;
@@ -96,17 +76,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
-    /**
-     * #property
-     */
     type: import("mobx-state-tree").ISimpleType<"LinearArcDisplay">;
-    /**
-     * #property
-     */
     configuration: AnyConfigurationSchemaType;
-    /**
-     * #property
-     */
     displayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 }, {
     rendererTypeName: string;
@@ -118,9 +89,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             id: string;
             type: string;
             rpcDriverName: string | undefined;
-        } & import("mobx-state-tree/dist/internal" /**
-         * #getter
-         */).NonEmptyObject & {
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
             message: string | undefined;
@@ -199,6 +168,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;
 } & {
+    readonly statsReadyAndRegionNotTooLarge: boolean;
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
     regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
 } & {
@@ -236,27 +206,12 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
     afterAttach(): void;
 } & {
-    /**
-     * #getter
-     */
     readonly blockType: string;
-    /**
-     * #getter
-     */
     readonly renderDelay: number;
-    /**
-     * #getter
-     */
     readonly rendererTypeName: any;
 } & {
-    /**
-     * #getter
-     */
     readonly displayModeSetting: any;
 } & {
-    /**
-     * #getter
-     */
     readonly rendererConfig: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -269,19 +224,10 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
 } & {
-    /**
-     * #method
-     */
     renderProps(): any;
 } & {
-    /**
-     * #action
-     */
     setDisplayMode(flag: string): void;
 } & {
-    /**
-     * #method
-     */
     trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
         label: string;
         subMenu: {
@@ -305,21 +251,12 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
 } & {
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
         reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined;
+        stopToken: string | undefined;
         filled: boolean;
         reactElement: React.ReactElement | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
@@ -343,15 +280,9 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         doReload(): void;
         afterAttach(): void;
         setStatus(message: string): void;
-        setLoading(abortController: AbortController): void;
+        setLoading(newStopToken: string): void;
         setMessage(messageText: string): void;
-        setRendered(props: {
-            reactElement: React.ReactElement;
-            features: Map<string, import("@jbrowse/core/util").Feature>;
-            layout: any;
-            maxHeightReached: boolean;
-            renderProps: any;
-        } | undefined): void;
+        setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
         setError(error: unknown): void;
         reload(): void;
         beforeDestroy(): void;
@@ -388,8 +319,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     type: string;
     id: string;
     configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
-    heightPreConfig: number | undefined;
     rpcDriverName: string | undefined;
+    heightPreConfig: number | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;

package/esm/LinearArcDisplay/model.js

@@ -1,61 +1,32 @@
-import { ConfigurationReference, getConf, } from '@jbrowse/core/configuration';
-import { types } from 'mobx-state-tree';
-import { BaseLinearDisplay } from '@jbrowse/plugin-linear-genome-view';
+import { ConfigurationReference, getConf } from '@jbrowse/core/configuration';
 import { getEnv } from '@jbrowse/core/util';
-/**
- * #stateModel LinearArcDisplay
- * extends
- * - [BaseLinearDisplay](../baselineardisplay)
- */
+import { BaseLinearDisplay } from '@jbrowse/plugin-linear-genome-view';
+import { types } from 'mobx-state-tree';
 export function stateModelFactory(configSchema) {
     return types
         .compose('LinearArcDisplay', BaseLinearDisplay, types.model({
-        /**
-         * #property
-         */
         type: types.literal('LinearArcDisplay'),
-        /**
-         * #property
-         */
         configuration: ConfigurationReference(configSchema),
-        /**
-         * #property
-         */
         displayMode: types.maybe(types.string),
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get blockType() {
             return 'staticBlocks';
         },
-        /**
-         * #getter
-         */
         get renderDelay() {
             return 500;
         },
-        /**
-         * #getter
-         */
         get rendererTypeName() {
             return self.configuration.renderer.type;
         },
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get displayModeSetting() {
             var _a;
             return (_a = self.displayMode) !== null && _a !== void 0 ? _a : getConf(self, ['renderer', 'displayMode']);
         },
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get rendererConfig() {
             const configBlob = getConf(self, ['renderer']) || {};
             const config = configBlob;
@@ -68,9 +39,6 @@ export function stateModelFactory(configSchema) {
         .views(self => {
         const { renderProps: superRenderProps } = self;
         return {
-            /**
-             * #method
-             */
             renderProps() {
                 return {
                     ...superRenderProps(),
@@ -82,9 +50,6 @@ export function stateModelFactory(configSchema) {
         };
     })
         .actions(self => ({
-        /**
-         * #action
-         */
         setDisplayMode(flag) {
             self.displayMode = flag;
         },
@@ -92,9 +57,6 @@ export function stateModelFactory(configSchema) {
         .views(self => {
         const superMenuItems = self.trackMenuItems;
         return {
-            /**
-             * #method
-             */
             trackMenuItems() {
                 return [
                     ...superMenuItems(),

package/esm/LinearPairedArcDisplay/afterAttach.d.ts

@@ -1,2 +1,2 @@
-import { IAnyStateTreeNode } from 'mobx-state-tree';
+import type { IAnyStateTreeNode } from 'mobx-state-tree';
 export declare function doAfterAttach<T extends IAnyStateTreeNode>(self: T): void;

package/esm/LinearPairedArcDisplay/afterAttach.js

@@ -1,5 +1,5 @@
-import { createAutorun } from './util';
 import { fetchChains } from './fetchChains';
+import { createAutorun } from './util';
 export function doAfterAttach(self) {
     createAutorun(self, async () => {
         await fetchChains(self);

package/esm/LinearPairedArcDisplay/components/Arcs.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { LinearArcDisplayModel } from '../model';
+import type { LinearArcDisplayModel } from '../model';
 declare const Arcs: ({ model, exportSVG, }: {
     model: LinearArcDisplayModel;
     exportSVG?: boolean;

package/esm/LinearPairedArcDisplay/components/Arcs.js

@@ -1,7 +1,7 @@
-import React, { lazy, Suspense, useRef, useState } from 'react';
-import { observer } from 'mobx-react';
-import { getContainingView, getSession, getStrokeProps, } from '@jbrowse/core/util';
+import React, { Suspense, lazy, useRef, useState } from 'react';
 import { getConf } from '@jbrowse/core/configuration';
+import { getContainingView, getSession, getStrokeProps, } from '@jbrowse/core/util';
+import { observer } from 'mobx-react';
 import { makeFeaturePair, makeSummary } from './util';
 const ArcTooltip = lazy(() => import('../../ArcTooltip'));
 const Arc = observer(function ({ model, feature, alt, assembly, view, }) {

package/esm/LinearPairedArcDisplay/components/BaseDisplayComponent.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { LinearArcDisplayModel } from '../model';
+import type { LinearArcDisplayModel } from '../model';
 declare const BaseDisplayComponent: ({ model, children, }: {
     model: LinearArcDisplayModel;
     children?: React.ReactNode;

package/esm/LinearPairedArcDisplay/components/BaseDisplayComponent.js

@@ -1,13 +1,12 @@
 import React, { lazy } from 'react';
-import { IconButton, Tooltip } from '@mui/material';
 import { LoadingEllipses } from '@jbrowse/core/ui';
+import { getSession } from '@jbrowse/core/util';
 import { BlockMsg } from '@jbrowse/plugin-linear-genome-view';
-import { makeStyles } from 'tss-react/mui';
-import { observer } from 'mobx-react';
-// icons
 import RefreshIcon from '@mui/icons-material/Refresh';
 import ReportIcon from '@mui/icons-material/Report';
-import { getSession } from '@jbrowse/core/util';
+import { IconButton, Tooltip } from '@mui/material';
+import { observer } from 'mobx-react';
+import { makeStyles } from 'tss-react/mui';
 const ErrorMessageStackTraceDialog = lazy(() => import('@jbrowse/core/ui/ErrorMessageStackTraceDialog'));
 const useStyles = makeStyles()(theme => ({
     loading: {

package/esm/LinearPairedArcDisplay/components/ReactComponent.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { LinearArcDisplayModel } from '../model';
+import type { LinearArcDisplayModel } from '../model';
 declare const LinearArcReactComponent: ({ model, exportSVG, }: {
     model: LinearArcDisplayModel;
     exportSVG?: boolean;

package/esm/LinearPairedArcDisplay/components/ReactComponent.js

@@ -1,7 +1,7 @@
 import React from 'react';
 import { observer } from 'mobx-react';
-import BaseDisplayComponent from './BaseDisplayComponent';
 import Arcs from './Arcs';
+import BaseDisplayComponent from './BaseDisplayComponent';
 const LinearArcReactComponent = observer(function ({ model, exportSVG, }) {
     return (React.createElement(BaseDisplayComponent, { model: model },
         React.createElement(Arcs, { model: model, exportSVG: exportSVG })));

package/esm/LinearPairedArcDisplay/components/util.d.ts

@@ -1,4 +1,4 @@
-import { Feature } from '@jbrowse/core/util';
+import type { Feature } from '@jbrowse/core/util';
 export declare function makeFeaturePair(feature: Feature, alt?: string): {
     k1: {
         refName: string;

package/esm/LinearPairedArcDisplay/components/util.js

@@ -13,19 +13,13 @@ export function makeFeaturePair(feature, alt) {
     let mateStart = 0;
     let joinDirection = 0;
     let mateDirection = 0;
-    // one sided bracket used, because there could be <INS:ME> and we just check
-    // startswith below
     const symbolicAlleles = ['<TRA', '<DEL', '<INV', '<INS', '<DUP', '<CNV'];
     if (symbolicAlleles.some(a => alt === null || alt === void 0 ? void 0 : alt.startsWith(a))) {
-        // END is defined to be a single value, not an array. CHR2 not defined in
-        // VCF spec, but should be similar
         const info = feature.get('INFO');
         const e = (_b = (_a = info === null || info === void 0 ? void 0 : info.END) === null || _a === void 0 ? void 0 : _a[0]) !== null && _b !== void 0 ? _b : end;
         mateRefName = (_d = (_c = info === null || info === void 0 ? void 0 : info.CHR2) === null || _c === void 0 ? void 0 : _c[0]) !== null && _d !== void 0 ? _d : refName;
         mateEnd = e;
         mateStart = e - 1;
-        // re-adjust the arc to be from start to end of feature by re-assigning end
-        // to the 'mate'
         end = start + 1;
     }
     else if (bnd === null || bnd === void 0 ? void 0 : bnd.MatePosition) {

package/esm/LinearPairedArcDisplay/configSchema.d.ts

@@ -1,10 +1,4 @@
-/**
- * #config LinearPairedArcDisplay
- */
 export declare function configSchemaFactory(): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    /**
-     * #slot
-     */
     color: {
         type: string;
         description: string;

package/esm/LinearPairedArcDisplay/configSchema.js

@@ -1,13 +1,7 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
 import { baseLinearDisplayConfigSchema } from '@jbrowse/plugin-linear-genome-view';
-/**
- * #config LinearPairedArcDisplay
- */
 export function configSchemaFactory() {
     return ConfigurationSchema('LinearPairedArcDisplay', {
-        /**
-         * #slot
-         */
         color: {
             type: 'color',
             description: 'the color of the arcs',
@@ -15,9 +9,6 @@ export function configSchemaFactory() {
             contextVariable: ['feature', 'alt'],
         },
     }, {
-        /**
-         * #baseConfiguration
-         */
         baseConfiguration: baseLinearDisplayConfigSchema,
         explicitlyTyped: true,
     });

package/esm/LinearPairedArcDisplay/fetchChains.d.ts

@@ -1,4 +1,4 @@
-import { LinearArcDisplayModel } from './model';
+import type { LinearArcDisplayModel } from './model';
 export interface ReducedFeature {
     name: string;
     strand: number;

package/esm/LinearPairedArcDisplay/fetchChains.js

@@ -1,10 +1,9 @@
 import { dedupe, getContainingTrack, getContainingView, getSession, } from '@jbrowse/core/util';
 export async function fetchChains(self) {
-    // @ts-expect-error
     const { rpcSessionId: sessionId } = getContainingTrack(self);
     const { rpcManager } = getSession(self);
     const view = getContainingView(self);
-    if (!view.initialized || self.error || self.regionTooLarge) {
+    if (!view.initialized || self.error || !self.statsReadyAndRegionNotTooLarge) {
         return;
     }
     self.setLoading(true);

package/esm/LinearPairedArcDisplay/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function LinearPairedArcDisplayF(pluginManager: PluginManager): void;

package/esm/LinearPairedArcDisplay/index.js

@@ -1,7 +1,7 @@
+import { lazy } from 'react';
 import { DisplayType } from '@jbrowse/core/pluggableElementTypes';
 import { configSchemaFactory } from './configSchema';
 import { stateModelFactory } from './model';
-import { lazy } from 'react';
 export default function LinearPairedArcDisplayF(pluginManager) {
     pluginManager.addDisplayType(() => {
         const configSchema = configSchemaFactory();

package/esm/LinearPairedArcDisplay/model.d.ts

@@ -1,17 +1,7 @@
-import React from 'react';
-import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
-import { Instance } from 'mobx-state-tree';
-import { Feature } from '@jbrowse/core/util';
-/**
- * #stateModel LinearPairedArcDisplay
- * this is a non-block-based track type, and can connect arcs across multiple
- * displayedRegions
- *
- * extends
- * - [BaseDisplay](../basedisplay)
- * - [TrackHeightMixin](../trackheightmixin)
- * - [FeatureDensityMixin](../featuredensitymixin)
- */
+import type React from 'react';
+import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import type { Feature } from '@jbrowse/core/util';
+import type { Instance } from 'mobx-state-tree';
 export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
@@ -22,17 +12,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
 } & {
-    /**
-     * #property
-     */
     type: import("mobx-state-tree").ISimpleType<"LinearPairedArcDisplay">;
-    /**
-     * #property
-     */
     configuration: AnyConfigurationSchemaType;
-    /**
-     * #property
-     */
     displayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 }, {
     rendererTypeName: string;
@@ -49,22 +30,14 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             error: unknown;
             message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree" /**
-             * #property
-             */).ISimpleType<string>, [undefined]>;
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import(
-            /**
-             * #getter
-             */
-            "mobx-state-tree").ISimpleType<string>>;
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
             error: unknown;
             message: string | undefined;
-        }, import("mobx-state-tree" /**
-         * #action
-         */)._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
         onHorizontalScroll?: () => void;
         blockState?: Record<string, any>;
     }>;
@@ -131,6 +104,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;
 } & {
+    readonly statsReadyAndRegionNotTooLarge: boolean;
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
     regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): React.JSX.Element | null;
 } & {
@@ -139,32 +113,14 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     loading: boolean;
     drawn: boolean;
 } & {
-    /**
-     * #getter
-     */
     readonly displayModeSetting: any;
 } & {
-    /**
-     * #action
-     */
     selectFeature(feature: Feature): void;
-    /**
-     * #action
-     */
     setLoading(flag: boolean): void;
-    /**
-     * #action
-     */
     setFeatures(f: Feature[]): void;
-    /**
-     * #action
-     */
     setDisplayMode(flag: string): void;
 } & {
     afterAttach(): void;
-    /**
-     * #action
-     */
     renderSvg(opts: {
         rasterizeLayers?: boolean;
     }): Promise<React.ReactNode>;

package/esm/LinearPairedArcDisplay/model.js

@@ -1,32 +1,13 @@
-import { ConfigurationReference, getConf, } from '@jbrowse/core/configuration';
-import { types } from 'mobx-state-tree';
-import { getSession, isSessionModelWithWidgets, getContainingView, getContainingTrack, isSelectionContainer, } from '@jbrowse/core/util';
+import { ConfigurationReference, getConf } from '@jbrowse/core/configuration';
 import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes';
+import { getContainingTrack, getContainingView, getSession, isSelectionContainer, isSessionModelWithWidgets, } from '@jbrowse/core/util';
 import { FeatureDensityMixin, TrackHeightMixin, } from '@jbrowse/plugin-linear-genome-view';
-/**
- * #stateModel LinearPairedArcDisplay
- * this is a non-block-based track type, and can connect arcs across multiple
- * displayedRegions
- *
- * extends
- * - [BaseDisplay](../basedisplay)
- * - [TrackHeightMixin](../trackheightmixin)
- * - [FeatureDensityMixin](../featuredensitymixin)
- */
+import { types } from 'mobx-state-tree';
 export function stateModelFactory(configSchema) {
     return types
         .compose('LinearPairedArcDisplay', BaseDisplay, TrackHeightMixin(), FeatureDensityMixin(), types.model({
-        /**
-         * #property
-         */
         type: types.literal('LinearPairedArcDisplay'),
-        /**
-         * #property
-         */
         configuration: ConfigurationReference(configSchema),
-        /**
-         * #property
-         */
         displayMode: types.maybe(types.string),
     }))
         .volatile(() => ({
@@ -36,18 +17,12 @@ export function stateModelFactory(configSchema) {
         drawn: true,
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get displayModeSetting() {
             var _a;
             return (_a = self.displayMode) !== null && _a !== void 0 ? _a : getConf(self, ['renderer', 'displayMode']);
         },
     }))
         .actions(self => ({
-        /**
-         * #action
-         */
         selectFeature(feature) {
             const session = getSession(self);
             if (isSessionModelWithWidgets(session)) {
@@ -62,28 +37,18 @@ export function stateModelFactory(configSchema) {
                 session.setSelection(feature);
             }
         },
-        /**
-         * #action
-         */
         setLoading(flag) {
             self.loading = flag;
         },
-        /**
-         * #action
-         */
         setFeatures(f) {
             self.features = f;
         },
-        /**
-         * #action
-         */
         setDisplayMode(flag) {
             self.displayMode = flag;
         },
     }))
         .actions(self => ({
         afterAttach() {
-            // eslint-disable-next-line @typescript-eslint/no-floating-promises
             ;
             (async () => {
                 try {
@@ -96,12 +61,8 @@ export function stateModelFactory(configSchema) {
                 }
             })();
         },
-        /**
-         * #action
-         */
         async renderSvg(opts) {
             const { renderArcSvg } = await import('./renderSvg');
-            // @ts-expect-error
             return renderArcSvg(self, opts);
         },
     }));