@jbrowse/plugin-alignments 4.1.3 → 4.1.5

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Files changed (18) hide show
  1. package/esm/AlignmentsFeatureDetail/configSchema.d.ts +1 -1
  2. package/esm/AlignmentsFeatureDetail/stateModelFactory.d.ts +2 -2
  3. package/esm/AlignmentsTrack/configSchemaF.d.ts +8 -8
  4. package/esm/BamAdapter/configSchema.d.ts +4 -4
  5. package/esm/CramAdapter/configSchema.d.ts +2 -2
  6. package/esm/HtsgetBamAdapter/configSchema.d.ts +2 -2
  7. package/esm/LinearAlignmentsDisplay/configSchema.d.ts +3 -3
  8. package/esm/LinearPileupDisplay/SharedLinearPileupDisplayMixin.d.ts +22 -10
  9. package/esm/LinearPileupDisplay/configSchema.d.ts +6 -6
  10. package/esm/LinearPileupDisplay/model.d.ts +22 -10
  11. package/esm/LinearReadArcsDisplay/configSchema.d.ts +4 -4
  12. package/esm/LinearReadCloudDisplay/configSchema.d.ts +4 -4
  13. package/esm/LinearSNPCoverageDisplay/configSchema.d.ts +5 -5
  14. package/esm/LinearSNPCoverageDisplay/model.d.ts +12 -6
  15. package/esm/PileupRenderer/configSchema.d.ts +2 -2
  16. package/esm/SNPCoverageAdapter/configSchema.d.ts +2 -2
  17. package/esm/SNPCoverageRenderer/configSchema.d.ts +2 -2
  18. package/package.json +8 -8
package/esm/AlignmentsFeatureDetail/configSchema.d.ts CHANGED
@@ -1 +1 @@
1
- export declare const configSchema: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
1
+ export declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
package/esm/AlignmentsFeatureDetail/stateModelFactory.d.ts CHANGED
@@ -33,7 +33,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
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  readonly hasExon: boolean | undefined;
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  readonly hasExonOrCDS: boolean | undefined;
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  } & {
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- afterAttach(): void;
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+ afterCreate(): void;
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  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
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  descriptions: import("@jbrowse/mobx-state-tree").IType<Record<string, unknown> | undefined, Record<string, unknown> | undefined, Record<string, unknown> | undefined>;
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  } & {
@@ -83,7 +83,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
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  readonly hasExon: boolean | undefined;
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  readonly hasExonOrCDS: boolean | undefined;
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  } & {
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- afterAttach(): void;
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+ afterCreate(): void;
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  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
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  descriptions: import("@jbrowse/mobx-state-tree").IType<Record<string, unknown> | undefined, Record<string, unknown> | undefined, Record<string, unknown> | undefined>;
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  }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & import("@jbrowse/mobx-state-tree")._NotCustomized, {
package/esm/AlignmentsTrack/configSchemaF.d.ts CHANGED
@@ -1,5 +1,5 @@
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  import type PluginManager from '@jbrowse/core/PluginManager';
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- export default function configSchemaFactory(pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
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+ export default function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  name: {
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  description: string;
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  type: string;
@@ -31,7 +31,7 @@ export default function configSchemaFactory(pluginManager: PluginManager): impor
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  defaultValue: string;
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  };
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  adapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
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- textSearching: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
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+ textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  indexingAttributes: {
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  type: string;
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  description: string;
@@ -43,9 +43,9 @@ export default function configSchemaFactory(pluginManager: PluginManager): impor
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  defaultValue: string[];
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  };
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  textSearchAdapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
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- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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  displays: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
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- formatDetails: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
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+ formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  feature: {
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  type: string;
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  description: string;
@@ -68,8 +68,8 @@ export default function configSchemaFactory(pluginManager: PluginManager): impor
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  defaultValue: number;
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  description: string;
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  };
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- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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- formatAbout: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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+ formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  config: {
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  type: string;
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  description: string;
@@ -80,5 +80,5 @@ export default function configSchemaFactory(pluginManager: PluginManager): impor
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  type: string;
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  defaultValue: boolean;
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  };
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- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
package/esm/BamAdapter/configSchema.d.ts CHANGED
@@ -1,4 +1,4 @@
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- declare const configSchema: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
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+ declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  bamLocation: {
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  type: string;
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  defaultValue: {
@@ -6,7 +6,7 @@ declare const configSchema: import("node_modules/@jbrowse/core/src/configuration
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  locationType: string;
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  };
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  };
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- index: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
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+ index: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  indexType: {
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  model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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  type: string;
@@ -19,11 +19,11 @@ declare const configSchema: import("node_modules/@jbrowse/core/src/configuration
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  locationType: string;
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  };
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  };
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- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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  fetchSizeLimit: {
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  type: string;
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  description: string;
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  defaultValue: number;
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  };
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- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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  export default configSchema;
package/esm/CramAdapter/configSchema.d.ts CHANGED
@@ -1,4 +1,4 @@
1
- declare const configSchema: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
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+ declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  fetchSizeLimit: {
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  type: string;
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  description: string;
@@ -18,5 +18,5 @@ declare const configSchema: import("node_modules/@jbrowse/core/src/configuration
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  locationType: string;
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  };
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  };
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- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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  export default configSchema;
package/esm/HtsgetBamAdapter/configSchema.d.ts CHANGED
@@ -1,4 +1,4 @@
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- declare const HtsgetBamAdapter: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
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+ declare const HtsgetBamAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  htsgetBase: {
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  type: string;
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  description: string;
@@ -9,5 +9,5 @@ declare const HtsgetBamAdapter: import("node_modules/@jbrowse/core/src/configura
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  description: string;
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  defaultValue: string;
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  };
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- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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  export default HtsgetBamAdapter;
package/esm/LinearAlignmentsDisplay/configSchema.d.ts CHANGED
@@ -1,12 +1,12 @@
1
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  import type PluginManager from '@jbrowse/core/PluginManager';
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- export default function configModelFactory(pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
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+ export default function configModelFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  pileupDisplay: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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  snpCoverageDisplay: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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  height: {
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  type: string;
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  defaultValue: number;
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  };
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- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  maxFeatureScreenDensity: {
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  type: string;
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  description: string;
@@ -33,4 +33,4 @@ export default function configModelFactory(pluginManager: PluginManager): import
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  description: string;
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  defaultValue: never[];
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  };
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- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;
package/esm/LinearPileupDisplay/SharedLinearPileupDisplayMixin.d.ts CHANGED
@@ -38,6 +38,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
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  statusMessage?: string;
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  reactElement?: React.ReactElement;
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  isRenderingPending?: boolean;
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+ displayHeight?: number;
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  };
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  }) => import("react/jsx-runtime").JSX.Element;
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  renderProps: any;
@@ -56,10 +57,11 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
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  beforeDestroy(): void;
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  } & {
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  readonly statusMessage: any;
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+ readonly displayHeight: number | undefined;
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  } & {
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  afterAttach(): void;
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  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
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- configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
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+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  maxFeatureScreenDensity: {
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  type: string;
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  description: string;
@@ -86,7 +88,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
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  description: string;
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  defaultValue: never[];
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  };
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- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
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+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
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  showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
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  showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
92
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  } & {
@@ -389,6 +391,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
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  statusMessage?: string;
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  reactElement?: React.ReactElement;
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  isRenderingPending?: boolean;
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+ displayHeight?: number;
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  };
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  }) => import("react/jsx-runtime").JSX.Element;
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  renderProps: any;
@@ -407,6 +410,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
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  beforeDestroy(): void;
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  } & {
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  readonly statusMessage: any;
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+ readonly displayHeight: number | undefined;
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  } & {
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  afterAttach(): void;
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  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
@@ -433,6 +437,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
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  statusMessage?: string;
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  reactElement?: React.ReactElement;
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  isRenderingPending?: boolean;
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+ displayHeight?: number;
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  };
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  }) => import("react/jsx-runtime").JSX.Element;
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  renderProps: any;
@@ -451,6 +456,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
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  beforeDestroy(): void;
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  } & {
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  readonly statusMessage: any;
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+ readonly displayHeight: number | undefined;
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  } & {
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  afterAttach(): void;
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  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
@@ -464,7 +470,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
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  [x: string]: any;
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  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
466
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  } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
467
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
473
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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  maxFeatureScreenDensity: {
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  type: string;
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  description: string;
@@ -491,7 +497,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
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  description: string;
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  defaultValue: never[];
493
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  };
494
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
500
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
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  showLegend: boolean | undefined;
496
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  showTooltips: boolean | undefined;
497
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  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -781,6 +787,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
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  statusMessage?: string;
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  reactElement?: React.ReactElement;
783
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  isRenderingPending?: boolean;
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+ displayHeight?: number;
784
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  };
785
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  }) => import("react/jsx-runtime").JSX.Element;
786
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  renderProps: any;
@@ -799,10 +806,11 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
799
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  beforeDestroy(): void;
800
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  } & {
801
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  readonly statusMessage: any;
809
+ readonly displayHeight: number | undefined;
802
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  } & {
803
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  afterAttach(): void;
804
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  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
805
- configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
813
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
806
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  maxFeatureScreenDensity: {
807
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  type: string;
808
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  description: string;
@@ -829,7 +837,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
829
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  description: string;
830
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  defaultValue: never[];
831
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  };
832
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
840
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
833
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  showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
834
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  showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
835
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  }, {
@@ -1375,6 +1383,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
1375
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  statusMessage?: string;
1376
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  reactElement?: React.ReactElement;
1377
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  isRenderingPending?: boolean;
1386
+ displayHeight?: number;
1378
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  };
1379
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  }) => import("react/jsx-runtime").JSX.Element;
1380
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  renderProps: any;
@@ -1393,10 +1402,11 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
1393
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  beforeDestroy(): void;
1394
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  } & {
1395
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  readonly statusMessage: any;
1405
+ readonly displayHeight: number | undefined;
1396
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  } & {
1397
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  afterAttach(): void;
1398
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  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1399
- configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
1409
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1400
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  maxFeatureScreenDensity: {
1401
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  type: string;
1402
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  description: string;
@@ -1423,7 +1433,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
1423
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  description: string;
1424
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  defaultValue: never[];
1425
1435
  };
1426
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
1436
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
1427
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  showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1428
1438
  showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1429
1439
  } & {
@@ -1472,6 +1482,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
1472
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  statusMessage?: string;
1473
1483
  reactElement?: React.ReactElement;
1474
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  isRenderingPending?: boolean;
1485
+ displayHeight?: number;
1475
1486
  };
1476
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  }) => import("react/jsx-runtime").JSX.Element;
1477
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  renderProps: any;
@@ -1490,10 +1501,11 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
1490
1501
  beforeDestroy(): void;
1491
1502
  } & {
1492
1503
  readonly statusMessage: any;
1504
+ readonly displayHeight: number | undefined;
1493
1505
  } & {
1494
1506
  afterAttach(): void;
1495
1507
  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1496
- configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
1508
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1497
1509
  maxFeatureScreenDensity: {
1498
1510
  type: string;
1499
1511
  description: string;
@@ -1520,7 +1532,7 @@ export declare function SharedLinearPileupDisplayMixin(configSchema: AnyConfigur
1520
1532
  description: string;
1521
1533
  defaultValue: never[];
1522
1534
  };
1523
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
1535
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
1524
1536
  showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1525
1537
  showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1526
1538
  } & {
package/esm/LinearPileupDisplay/configSchema.d.ts CHANGED
@@ -1,13 +1,13 @@
1
1
  import type PluginManager from '@jbrowse/core/PluginManager';
2
- declare function configSchemaF(pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
2
+ declare function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
3
  defaultRendering: {
4
4
  type: string;
5
5
  model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
6
6
  defaultValue: string;
7
7
  };
8
- renderers: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
8
+ renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
9
9
  PileupRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
10
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
10
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
11
11
  maxFeatureScreenDensity: {
12
12
  type: string;
13
13
  description: string;
@@ -28,9 +28,9 @@ declare function configSchemaF(pluginManager: PluginManager): import("node_modul
28
28
  flagExclude: number;
29
29
  };
30
30
  };
31
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
31
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
32
32
  renderer: import("@jbrowse/mobx-state-tree").IAnyModelType;
33
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
33
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
34
34
  maxFeatureScreenDensity: {
35
35
  type: string;
36
36
  description: string;
@@ -57,5 +57,5 @@ declare function configSchemaF(pluginManager: PluginManager): import("node_modul
57
57
  description: string;
58
58
  defaultValue: never[];
59
59
  };
60
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
60
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
61
61
  export default configSchemaF;
package/esm/LinearPileupDisplay/model.d.ts CHANGED
@@ -35,6 +35,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
35
35
  statusMessage?: string;
36
36
  reactElement?: React.ReactElement;
37
37
  isRenderingPending?: boolean;
38
+ displayHeight?: number;
38
39
  };
39
40
  }) => import("react/jsx-runtime").JSX.Element;
40
41
  renderProps: any;
@@ -53,10 +54,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
53
54
  beforeDestroy(): void;
54
55
  } & {
55
56
  readonly statusMessage: any;
57
+ readonly displayHeight: number | undefined;
56
58
  } & {
57
59
  afterAttach(): void;
58
60
  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
59
- configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
61
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
60
62
  maxFeatureScreenDensity: {
61
63
  type: string;
62
64
  description: string;
@@ -83,7 +85,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
83
85
  description: string;
84
86
  defaultValue: never[];
85
87
  };
86
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
88
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
87
89
  showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
88
90
  showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
89
91
  } & {
@@ -392,6 +394,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
392
394
  statusMessage?: string;
393
395
  reactElement?: React.ReactElement;
394
396
  isRenderingPending?: boolean;
397
+ displayHeight?: number;
395
398
  };
396
399
  }) => import("react/jsx-runtime").JSX.Element;
397
400
  renderProps: any;
@@ -410,6 +413,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
410
413
  beforeDestroy(): void;
411
414
  } & {
412
415
  readonly statusMessage: any;
416
+ readonly displayHeight: number | undefined;
413
417
  } & {
414
418
  afterAttach(): void;
415
419
  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
@@ -436,6 +440,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
436
440
  statusMessage?: string;
437
441
  reactElement?: React.ReactElement;
438
442
  isRenderingPending?: boolean;
443
+ displayHeight?: number;
439
444
  };
440
445
  }) => import("react/jsx-runtime").JSX.Element;
441
446
  renderProps: any;
@@ -454,6 +459,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
454
459
  beforeDestroy(): void;
455
460
  } & {
456
461
  readonly statusMessage: any;
462
+ readonly displayHeight: number | undefined;
457
463
  } & {
458
464
  afterAttach(): void;
459
465
  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
@@ -467,7 +473,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
467
473
  [x: string]: any;
468
474
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
469
475
  } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
470
- } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
476
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
471
477
  maxFeatureScreenDensity: {
472
478
  type: string;
473
479
  description: string;
@@ -494,7 +500,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
494
500
  description: string;
495
501
  defaultValue: never[];
496
502
  };
497
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
503
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
498
504
  showLegend: boolean | undefined;
499
505
  showTooltips: boolean | undefined;
500
506
  } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -784,6 +790,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
784
790
  statusMessage?: string;
785
791
  reactElement?: React.ReactElement;
786
792
  isRenderingPending?: boolean;
793
+ displayHeight?: number;
787
794
  };
788
795
  }) => import("react/jsx-runtime").JSX.Element;
789
796
  renderProps: any;
@@ -802,10 +809,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
802
809
  beforeDestroy(): void;
803
810
  } & {
804
811
  readonly statusMessage: any;
812
+ readonly displayHeight: number | undefined;
805
813
  } & {
806
814
  afterAttach(): void;
807
815
  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
808
- configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
816
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
809
817
  maxFeatureScreenDensity: {
810
818
  type: string;
811
819
  description: string;
@@ -832,7 +840,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
832
840
  description: string;
833
841
  defaultValue: never[];
834
842
  };
835
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
843
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
836
844
  showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
837
845
  showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
838
846
  }, {
@@ -1490,6 +1498,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
1490
1498
  statusMessage?: string;
1491
1499
  reactElement?: React.ReactElement;
1492
1500
  isRenderingPending?: boolean;
1501
+ displayHeight?: number;
1493
1502
  };
1494
1503
  }) => import("react/jsx-runtime").JSX.Element;
1495
1504
  renderProps: any;
@@ -1508,10 +1517,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
1508
1517
  beforeDestroy(): void;
1509
1518
  } & {
1510
1519
  readonly statusMessage: any;
1520
+ readonly displayHeight: number | undefined;
1511
1521
  } & {
1512
1522
  afterAttach(): void;
1513
1523
  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1514
- configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
1524
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1515
1525
  maxFeatureScreenDensity: {
1516
1526
  type: string;
1517
1527
  description: string;
@@ -1538,7 +1548,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
1538
1548
  description: string;
1539
1549
  defaultValue: never[];
1540
1550
  };
1541
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
1551
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
1542
1552
  showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1543
1553
  showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1544
1554
  } & {
@@ -1587,6 +1597,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
1587
1597
  statusMessage?: string;
1588
1598
  reactElement?: React.ReactElement;
1589
1599
  isRenderingPending?: boolean;
1600
+ displayHeight?: number;
1590
1601
  };
1591
1602
  }) => import("react/jsx-runtime").JSX.Element;
1592
1603
  renderProps: any;
@@ -1605,10 +1616,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
1605
1616
  beforeDestroy(): void;
1606
1617
  } & {
1607
1618
  readonly statusMessage: any;
1619
+ readonly displayHeight: number | undefined;
1608
1620
  } & {
1609
1621
  afterAttach(): void;
1610
1622
  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1611
- configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
1623
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
1612
1624
  maxFeatureScreenDensity: {
1613
1625
  type: string;
1614
1626
  description: string;
@@ -1635,7 +1647,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
1635
1647
  description: string;
1636
1648
  defaultValue: never[];
1637
1649
  };
1638
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
1650
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
1639
1651
  showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1640
1652
  showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
1641
1653
  } & {
package/esm/LinearReadArcsDisplay/configSchema.d.ts CHANGED
@@ -1,5 +1,5 @@
1
1
  import type PluginManager from '@jbrowse/core/PluginManager';
2
- declare function configSchemaF(pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
2
+ declare function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
3
  maxFeatureScreenDensity: {
4
4
  type: string;
5
5
  description: string;
@@ -28,9 +28,9 @@ declare function configSchemaF(pluginManager: PluginManager): import("node_modul
28
28
  flagExclude: number;
29
29
  };
30
30
  };
31
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
31
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
32
32
  renderer: import("@jbrowse/mobx-state-tree").IAnyModelType;
33
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
33
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
34
34
  maxFeatureScreenDensity: {
35
35
  type: string;
36
36
  description: string;
@@ -57,5 +57,5 @@ declare function configSchemaF(pluginManager: PluginManager): import("node_modul
57
57
  description: string;
58
58
  defaultValue: never[];
59
59
  };
60
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
60
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
61
61
  export default configSchemaF;
package/esm/LinearReadCloudDisplay/configSchema.d.ts CHANGED
@@ -1,5 +1,5 @@
1
1
  import type PluginManager from '@jbrowse/core/PluginManager';
2
- declare function configSchemaF(pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
2
+ declare function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
3
  minSubfeatureWidth: {
4
4
  type: string;
5
5
  defaultValue: number;
@@ -38,9 +38,9 @@ declare function configSchemaF(pluginManager: PluginManager): import("node_modul
38
38
  flagExclude: number;
39
39
  };
40
40
  };
41
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
41
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
42
42
  renderer: import("@jbrowse/mobx-state-tree").IAnyModelType;
43
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
43
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
44
44
  maxFeatureScreenDensity: {
45
45
  type: string;
46
46
  description: string;
@@ -67,5 +67,5 @@ declare function configSchemaF(pluginManager: PluginManager): import("node_modul
67
67
  description: string;
68
68
  defaultValue: never[];
69
69
  };
70
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
70
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
71
71
  export default configSchemaF;
package/esm/LinearSNPCoverageDisplay/configSchema.d.ts CHANGED
@@ -1,5 +1,5 @@
1
1
  import type PluginManager from '@jbrowse/core/PluginManager';
2
- export default function SNPCoverageConfigFactory(pluginManager: PluginManager): import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
2
+ export default function SNPCoverageConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
3
  autoscale: {
4
4
  type: string;
5
5
  defaultValue: string;
@@ -32,9 +32,9 @@ export default function SNPCoverageConfigFactory(pluginManager: PluginManager):
32
32
  description: string;
33
33
  defaultValue: boolean;
34
34
  };
35
- renderers: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
35
+ renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
36
36
  SNPCoverageRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
37
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
37
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
38
38
  colorBy: {
39
39
  type: string;
40
40
  description: string;
@@ -50,7 +50,7 @@ export default function SNPCoverageConfigFactory(pluginManager: PluginManager):
50
50
  flagExclude: number;
51
51
  };
52
52
  };
53
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
53
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
54
54
  maxFeatureScreenDensity: {
55
55
  type: string;
56
56
  description: string;
@@ -77,4 +77,4 @@ export default function SNPCoverageConfigFactory(pluginManager: PluginManager):
77
77
  description: string;
78
78
  defaultValue: never[];
79
79
  };
80
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;
80
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;
package/esm/LinearSNPCoverageDisplay/model.d.ts CHANGED
@@ -37,6 +37,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
37
37
  statusMessage?: string;
38
38
  reactElement?: React.ReactElement;
39
39
  isRenderingPending?: boolean;
40
+ displayHeight?: number;
40
41
  };
41
42
  }) => import("react/jsx-runtime").JSX.Element;
42
43
  renderProps: any;
@@ -55,10 +56,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
55
56
  beforeDestroy(): void;
56
57
  } & {
57
58
  readonly statusMessage: any;
59
+ readonly displayHeight: number | undefined;
58
60
  } & {
59
61
  afterAttach(): void;
60
62
  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
61
- configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
63
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
62
64
  maxFeatureScreenDensity: {
63
65
  type: string;
64
66
  description: string;
@@ -85,7 +87,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
85
87
  description: string;
86
88
  defaultValue: never[];
87
89
  };
88
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
90
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
89
91
  showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
90
92
  showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
91
93
  } & {
@@ -152,6 +154,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
152
154
  statusMessage?: string;
153
155
  reactElement?: React.ReactElement;
154
156
  isRenderingPending?: boolean;
157
+ displayHeight?: number;
155
158
  };
156
159
  }) => import("react/jsx-runtime").JSX.Element;
157
160
  renderProps: any;
@@ -170,10 +173,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
170
173
  beforeDestroy(): void;
171
174
  } & {
172
175
  readonly statusMessage: any;
176
+ readonly displayHeight: number | undefined;
173
177
  } & {
174
178
  afterAttach(): void;
175
179
  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
176
- configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
180
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
177
181
  maxFeatureScreenDensity: {
178
182
  type: string;
179
183
  description: string;
@@ -200,7 +204,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
200
204
  description: string;
201
205
  defaultValue: never[];
202
206
  };
203
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
207
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
204
208
  showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
205
209
  showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
206
210
  } & {
@@ -267,6 +271,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
267
271
  statusMessage?: string;
268
272
  reactElement?: React.ReactElement;
269
273
  isRenderingPending?: boolean;
274
+ displayHeight?: number;
270
275
  };
271
276
  }) => import("react/jsx-runtime").JSX.Element;
272
277
  renderProps: any;
@@ -285,10 +290,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
285
290
  beforeDestroy(): void;
286
291
  } & {
287
292
  readonly statusMessage: any;
293
+ readonly displayHeight: number | undefined;
288
294
  } & {
289
295
  afterAttach(): void;
290
296
  }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
291
- configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
297
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
292
298
  maxFeatureScreenDensity: {
293
299
  type: string;
294
300
  description: string;
@@ -315,7 +321,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
315
321
  description: string;
316
322
  defaultValue: never[];
317
323
  };
318
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
324
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
319
325
  showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
320
326
  showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
321
327
  } & {
package/esm/PileupRenderer/configSchema.d.ts CHANGED
@@ -1,4 +1,4 @@
1
- declare const PileupRenderer: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
1
+ declare const PileupRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
2
  color: {
3
3
  type: string;
4
4
  description: string;
@@ -68,5 +68,5 @@ declare const PileupRenderer: import("node_modules/@jbrowse/core/src/configurati
68
68
  defaultValue: boolean;
69
69
  description: string;
70
70
  };
71
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
71
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
72
72
  export default PileupRenderer;
package/esm/SNPCoverageAdapter/configSchema.d.ts CHANGED
@@ -1,4 +1,4 @@
1
- declare const configSchema: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
1
+ declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
2
  subadapter: {
3
3
  type: string;
4
4
  defaultValue: null;
@@ -7,5 +7,5 @@ declare const configSchema: import("node_modules/@jbrowse/core/src/configuration
7
7
  type: string;
8
8
  defaultValue: null;
9
9
  };
10
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
10
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
11
11
  export default configSchema;
package/esm/SNPCoverageRenderer/configSchema.d.ts CHANGED
@@ -1,4 +1,4 @@
1
- declare const SNPCoverageRenderer: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
1
+ declare const SNPCoverageRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
2
  clipColor: {
3
3
  type: string;
4
4
  description: string;
@@ -29,5 +29,5 @@ declare const SNPCoverageRenderer: import("node_modules/@jbrowse/core/src/config
29
29
  description: string;
30
30
  defaultValue: string;
31
31
  };
32
- }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
32
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
33
33
  export default SNPCoverageRenderer;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-alignments",
3
- "version": "4.1.3",
3
+ "version": "4.1.5",
4
4
  "type": "module",
5
5
  "description": "JBrowse 2 alignments adapters, tracks, etc.",
6
6
  "keywords": [
@@ -22,10 +22,10 @@
22
22
  ],
23
23
  "dependencies": {
24
24
  "@gmod/bam": "^7.1.15",
25
- "@gmod/cram": "^8.0.0",
25
+ "@gmod/cram": "^8.0.1",
26
26
  "@jbrowse/mobx-state-tree": "^5.5.0",
27
- "@mui/icons-material": "^7.3.7",
28
- "@mui/material": "^7.3.7",
27
+ "@mui/icons-material": "^7.3.8",
28
+ "@mui/material": "^7.3.8",
29
29
  "@mui/x-charts-vendor": "^8.26.0",
30
30
  "canvas2svg": "^1.0.16",
31
31
  "copy-to-clipboard": "^3.3.3",
@@ -34,10 +34,10 @@
34
34
  "mobx": "^6.15.0",
35
35
  "mobx-react": "^9.2.1",
36
36
  "rxjs": "^7.8.2",
37
- "@jbrowse/core": "^4.1.3",
38
- "@jbrowse/plugin-linear-genome-view": "^4.1.3",
39
- "@jbrowse/sv-core": "^4.1.3",
40
- "@jbrowse/plugin-wiggle": "^4.1.3"
37
+ "@jbrowse/core": "^4.1.5",
38
+ "@jbrowse/plugin-linear-genome-view": "^4.1.5",
39
+ "@jbrowse/sv-core": "^4.1.5",
40
+ "@jbrowse/plugin-wiggle": "^4.1.5"
41
41
  },
42
42
  "peerDependencies": {
43
43
  "react": ">=18.0.0"